Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00715

Experiment: Biofilm; Day4; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00710 and LRK53_RS00715 overlap by 4 nucleotidesLRK53_RS00715 and LRK53_RS00720 are separated by 169 nucleotidesLRK53_RS00720 and LRK53_RS00725 are separated by 75 nucleotides LRK53_RS00710: LRK53_RS00710 - insulinase family protein, at 166,685 to 168,064 _RS00710 LRK53_RS00715: LRK53_RS00715 - insulinase family protein, at 168,061 to 169,536 _RS00715 LRK53_RS00720: LRK53_RS00720 - acyloxyacyl hydrolase, at 169,706 to 170,227 _RS00720 LRK53_RS00725: LRK53_RS00725 - DHA2 family efflux MFS transporter permease subunit, at 170,303 to 171,829 _RS00725 Position (kb) 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.163 kb on - strand, within LRK53_RS00710at 167.163 kb on - strand, within LRK53_RS00710at 167.189 kb on + strand, within LRK53_RS00710at 167.189 kb on + strand, within LRK53_RS00710at 167.225 kb on + strand, within LRK53_RS00710at 167.225 kb on + strand, within LRK53_RS00710at 167.225 kb on + strand, within LRK53_RS00710at 167.226 kb on - strand, within LRK53_RS00710at 167.226 kb on - strand, within LRK53_RS00710at 167.226 kb on - strand, within LRK53_RS00710at 167.241 kb on - strand, within LRK53_RS00710at 167.241 kb on - strand, within LRK53_RS00710at 167.321 kb on + strand, within LRK53_RS00710at 167.322 kb on - strand, within LRK53_RS00710at 167.322 kb on - strand, within LRK53_RS00710at 167.396 kb on + strand, within LRK53_RS00710at 167.396 kb on + strand, within LRK53_RS00710at 167.396 kb on + strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.397 kb on - strand, within LRK53_RS00710at 167.477 kb on + strand, within LRK53_RS00710at 167.478 kb on - strand, within LRK53_RS00710at 167.478 kb on - strand, within LRK53_RS00710at 167.478 kb on - strand, within LRK53_RS00710at 167.478 kb on - strand, within LRK53_RS00710at 167.615 kb on + strand, within LRK53_RS00710at 167.615 kb on + strand, within LRK53_RS00710at 167.615 kb on + strand, within LRK53_RS00710at 167.615 kb on + strand, within LRK53_RS00710at 167.615 kb on + strand, within LRK53_RS00710at 167.616 kb on - strand, within LRK53_RS00710at 167.630 kb on + strand, within LRK53_RS00710at 167.630 kb on + strand, within LRK53_RS00710at 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.981 kb on + strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 167.982 kb on - strandat 168.014 kb on + strandat 168.014 kb on + strandat 168.014 kb on + strandat 168.015 kb on - strandat 168.015 kb on - strandat 168.015 kb on - strandat 168.282 kb on - strand, within LRK53_RS00715at 168.282 kb on - strand, within LRK53_RS00715at 168.282 kb on - strand, within LRK53_RS00715at 168.539 kb on + strand, within LRK53_RS00715at 168.647 kb on - strand, within LRK53_RS00715at 168.727 kb on + strand, within LRK53_RS00715at 168.961 kb on + strand, within LRK53_RS00715at 168.961 kb on + strand, within LRK53_RS00715at 168.961 kb on + strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.962 kb on - strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.964 kb on + strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 168.965 kb on - strand, within LRK53_RS00715at 169.003 kb on + strand, within LRK53_RS00715at 169.003 kb on + strand, within LRK53_RS00715at 169.051 kb on + strand, within LRK53_RS00715at 169.052 kb on - strand, within LRK53_RS00715at 169.234 kb on + strand, within LRK53_RS00715at 169.294 kb on + strand, within LRK53_RS00715at 169.294 kb on + strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.295 kb on - strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.324 kb on + strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.325 kb on - strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.369 kb on + strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.370 kb on - strand, within LRK53_RS00715at 169.534 kb on + strandat 169.534 kb on + strandat 169.534 kb on + strandat 169.535 kb on - strandat 169.535 kb on - strandat 169.655 kb on + strandat 169.655 kb on + strandat 169.658 kb on + strandat 169.658 kb on + strandat 169.658 kb on + strandat 169.659 kb on - strandat 169.659 kb on - strandat 169.659 kb on - strandat 169.670 kb on + strandat 169.817 kb on - strand, within LRK53_RS00720at 169.817 kb on - strand, within LRK53_RS00720at 169.817 kb on - strand, within LRK53_RS00720at 169.817 kb on - strand, within LRK53_RS00720at 169.952 kb on + strand, within LRK53_RS00720at 169.952 kb on + strand, within LRK53_RS00720at 170.024 kb on + strand, within LRK53_RS00720at 170.025 kb on - strand, within LRK53_RS00720at 170.025 kb on - strand, within LRK53_RS00720at 170.094 kb on - strand, within LRK53_RS00720at 170.094 kb on - strand, within LRK53_RS00720at 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.428 kb on - strandat 170.523 kb on + strand, within LRK53_RS00725at 170.523 kb on + strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725at 170.524 kb on - strand, within LRK53_RS00725

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day4; SGW; pH7
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167,163 - LRK53_RS00710 0.35 -0.1
167,163 - LRK53_RS00710 0.35 -0.3
167,189 + LRK53_RS00710 0.37 -0.4
167,189 + LRK53_RS00710 0.37 +0.2
167,225 + LRK53_RS00710 0.39 -0.5
167,225 + LRK53_RS00710 0.39 -0.8
167,225 + LRK53_RS00710 0.39 -2.6
167,226 - LRK53_RS00710 0.39 -0.1
167,226 - LRK53_RS00710 0.39 +0.3
167,226 - LRK53_RS00710 0.39 +0.8
167,241 - LRK53_RS00710 0.40 +0.6
167,241 - LRK53_RS00710 0.40 +0.9
167,321 + LRK53_RS00710 0.46 -0.7
167,322 - LRK53_RS00710 0.46 +1.2
167,322 - LRK53_RS00710 0.46 +0.8
167,396 + LRK53_RS00710 0.52 -2.4
167,396 + LRK53_RS00710 0.52 +1.9
167,396 + LRK53_RS00710 0.52 -0.6
167,397 - LRK53_RS00710 0.52 -0.1
167,397 - LRK53_RS00710 0.52 +1.1
167,397 - LRK53_RS00710 0.52 +0.2
167,397 - LRK53_RS00710 0.52 -0.8
167,397 - LRK53_RS00710 0.52 -0.6
167,397 - LRK53_RS00710 0.52 -0.4
167,397 - LRK53_RS00710 0.52 -2.3
167,477 + LRK53_RS00710 0.57 -2.3
167,478 - LRK53_RS00710 0.57 -0.9
167,478 - LRK53_RS00710 0.57 -0.3
167,478 - LRK53_RS00710 0.57 -0.3
167,478 - LRK53_RS00710 0.57 -1.0
167,615 + LRK53_RS00710 0.67 -0.3
167,615 + LRK53_RS00710 0.67 +0.5
167,615 + LRK53_RS00710 0.67 -0.3
167,615 + LRK53_RS00710 0.67 +0.5
167,615 + LRK53_RS00710 0.67 +0.2
167,616 - LRK53_RS00710 0.67 -0.3
167,630 + LRK53_RS00710 0.68 -1.9
167,630 + LRK53_RS00710 0.68 -1.9
167,981 + -0.9
167,981 + -2.4
167,981 + -1.5
167,981 + -0.3
167,981 + +0.0
167,981 + +0.4
167,981 + -0.5
167,981 + +3.7
167,981 + -2.6
167,981 + -0.3
167,981 + -1.6
167,982 - +1.1
167,982 - +0.5
167,982 - -0.7
167,982 - +1.7
167,982 - +1.4
167,982 - +0.5
167,982 - -1.3
167,982 - -0.3
168,014 + -1.9
168,014 + -0.9
168,014 + -0.8
168,015 - +0.2
168,015 - -1.9
168,015 - -0.8
168,282 - LRK53_RS00715 0.15 +0.1
168,282 - LRK53_RS00715 0.15 -1.0
168,282 - LRK53_RS00715 0.15 -0.2
168,539 + LRK53_RS00715 0.32 -3.0
168,647 - LRK53_RS00715 0.40 -0.5
168,727 + LRK53_RS00715 0.45 -1.1
168,961 + LRK53_RS00715 0.61 -1.6
168,961 + LRK53_RS00715 0.61 +1.4
168,961 + LRK53_RS00715 0.61 -0.1
168,962 - LRK53_RS00715 0.61 -1.1
168,962 - LRK53_RS00715 0.61 +0.1
168,962 - LRK53_RS00715 0.61 -1.2
168,962 - LRK53_RS00715 0.61 -0.6
168,962 - LRK53_RS00715 0.61 -1.6
168,964 + LRK53_RS00715 0.61 -1.2
168,964 + LRK53_RS00715 0.61 -0.3
168,964 + LRK53_RS00715 0.61 -0.6
168,964 + LRK53_RS00715 0.61 -0.3
168,964 + LRK53_RS00715 0.61 -0.2
168,964 + LRK53_RS00715 0.61 -2.4
168,964 + LRK53_RS00715 0.61 -1.6
168,964 + LRK53_RS00715 0.61 -1.5
168,964 + LRK53_RS00715 0.61 -1.6
168,964 + LRK53_RS00715 0.61 -1.0
168,964 + LRK53_RS00715 0.61 -1.1
168,964 + LRK53_RS00715 0.61 -2.8
168,964 + LRK53_RS00715 0.61 -1.2
168,964 + LRK53_RS00715 0.61 -2.3
168,964 + LRK53_RS00715 0.61 -0.3
168,964 + LRK53_RS00715 0.61 -0.8
168,965 - LRK53_RS00715 0.61 -1.4
168,965 - LRK53_RS00715 0.61 -0.2
168,965 - LRK53_RS00715 0.61 -0.3
168,965 - LRK53_RS00715 0.61 +0.7
168,965 - LRK53_RS00715 0.61 -1.8
168,965 - LRK53_RS00715 0.61 -1.8
169,003 + LRK53_RS00715 0.64 -1.3
169,003 + LRK53_RS00715 0.64 -0.3
169,051 + LRK53_RS00715 0.67 +0.4
169,052 - LRK53_RS00715 0.67 +0.5
169,234 + LRK53_RS00715 0.79 -1.1
169,294 + LRK53_RS00715 0.84 -1.6
169,294 + LRK53_RS00715 0.84 +0.8
169,295 - LRK53_RS00715 0.84 -2.9
169,295 - LRK53_RS00715 0.84 -1.1
169,295 - LRK53_RS00715 0.84 -0.3
169,324 + LRK53_RS00715 0.86 +0.7
169,324 + LRK53_RS00715 0.86 -0.9
169,324 + LRK53_RS00715 0.86 -2.1
169,324 + LRK53_RS00715 0.86 +0.4
169,324 + LRK53_RS00715 0.86 -0.1
169,324 + LRK53_RS00715 0.86 -0.7
169,324 + LRK53_RS00715 0.86 -1.4
169,324 + LRK53_RS00715 0.86 -0.1
169,324 + LRK53_RS00715 0.86 +0.2
169,324 + LRK53_RS00715 0.86 -0.7
169,324 + LRK53_RS00715 0.86 -0.5
169,324 + LRK53_RS00715 0.86 -0.9
169,324 + LRK53_RS00715 0.86 -0.7
169,325 - LRK53_RS00715 0.86 -1.9
169,325 - LRK53_RS00715 0.86 -0.3
169,325 - LRK53_RS00715 0.86 -1.9
169,325 - LRK53_RS00715 0.86 -1.4
169,325 - LRK53_RS00715 0.86 +0.2
169,325 - LRK53_RS00715 0.86 -0.3
169,325 - LRK53_RS00715 0.86 -0.2
169,325 - LRK53_RS00715 0.86 +0.2
169,369 + LRK53_RS00715 0.89 +1.4
169,369 + LRK53_RS00715 0.89 -2.9
169,369 + LRK53_RS00715 0.89 -1.4
169,369 + LRK53_RS00715 0.89 -0.6
169,369 + LRK53_RS00715 0.89 -1.1
169,369 + LRK53_RS00715 0.89 -1.4
169,370 - LRK53_RS00715 0.89 -0.9
169,370 - LRK53_RS00715 0.89 -1.6
169,370 - LRK53_RS00715 0.89 -0.3
169,370 - LRK53_RS00715 0.89 -2.3
169,534 + +0.3
169,534 + -0.1
169,534 + -1.7
169,535 - -1.4
169,535 - -0.8
169,655 + -0.3
169,655 + -0.1
169,658 + -0.7
169,658 + -1.2
169,658 + +0.5
169,659 - -2.2
169,659 - -0.6
169,659 - +0.2
169,670 + -1.4
169,817 - LRK53_RS00720 0.21 -1.8
169,817 - LRK53_RS00720 0.21 -1.8
169,817 - LRK53_RS00720 0.21 +0.9
169,817 - LRK53_RS00720 0.21 -2.0
169,952 + LRK53_RS00720 0.47 -1.5
169,952 + LRK53_RS00720 0.47 -2.1
170,024 + LRK53_RS00720 0.61 -0.3
170,025 - LRK53_RS00720 0.61 -0.6
170,025 - LRK53_RS00720 0.61 -1.3
170,094 - LRK53_RS00720 0.74 +0.9
170,094 - LRK53_RS00720 0.74 -1.5
170,428 - -1.6
170,428 - -2.6
170,428 - -1.3
170,428 - -0.6
170,428 - -0.6
170,523 + LRK53_RS00725 0.14 -0.2
170,523 + LRK53_RS00725 0.14 -0.9
170,524 - LRK53_RS00725 0.14 -0.9
170,524 - LRK53_RS00725 0.14 -0.9
170,524 - LRK53_RS00725 0.14 -1.1
170,524 - LRK53_RS00725 0.14 +1.0

Or see this region's nucleotide sequence