Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19145

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS19135 and LRK53_RS19140 overlap by 4 nucleotidesLRK53_RS19140 and LRK53_RS19145 overlap by 4 nucleotidesLRK53_RS19145 and LRK53_RS19150 are separated by 93 nucleotides LRK53_RS19135: LRK53_RS19135 - hypothetical protein, at 210,743 to 211,420 _RS19135 LRK53_RS19140: LRK53_RS19140 - hypothetical protein, at 211,417 to 211,875 _RS19140 LRK53_RS19145: LRK53_RS19145 - hypothetical protein, at 211,872 to 212,369 _RS19145 LRK53_RS19150: LRK53_RS19150 - hypothetical protein, at 212,463 to 213,278 _RS19150 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.948 kb on + strand, within LRK53_RS19135at 210.949 kb on - strand, within LRK53_RS19135at 211.028 kb on + strand, within LRK53_RS19135at 211.124 kb on + strand, within LRK53_RS19135at 211.124 kb on + strand, within LRK53_RS19135at 211.214 kb on + strand, within LRK53_RS19135at 211.361 kb on + strandat 211.459 kb on + strandat 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.488 kb on + strand, within LRK53_RS19140at 211.489 kb on - strand, within LRK53_RS19140at 211.572 kb on + strand, within LRK53_RS19140at 211.829 kb on + strand, within LRK53_RS19140at 211.971 kb on + strand, within LRK53_RS19145at 211.971 kb on + strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.972 kb on - strand, within LRK53_RS19145at 211.973 kb on + strand, within LRK53_RS19145at 212.008 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.044 kb on + strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.045 kb on - strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.057 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.298 kb on + strand, within LRK53_RS19145at 212.299 kb on - strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.307 kb on + strand, within LRK53_RS19145at 212.308 kb on - strand, within LRK53_RS19145at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.574 kb on + strand, within LRK53_RS19150at 212.575 kb on - strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.817 kb on + strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.818 kb on - strand, within LRK53_RS19150at 212.928 kb on + strand, within LRK53_RS19150at 212.929 kb on - strand, within LRK53_RS19150at 212.929 kb on - strand, within LRK53_RS19150at 213.135 kb on + strand, within LRK53_RS19150at 213.136 kb on - strand, within LRK53_RS19150at 213.136 kb on - strand, within LRK53_RS19150at 213.158 kb on - strand, within LRK53_RS19150at 213.168 kb on + strand, within LRK53_RS19150at 213.168 kb on + strand, within LRK53_RS19150at 213.334 kb on + strandat 213.334 kb on + strandat 213.334 kb on + strandat 213.334 kb on + strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strandat 213.335 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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210,948 + LRK53_RS19135 0.30 +0.3
210,949 - LRK53_RS19135 0.30 -1.0
211,028 + LRK53_RS19135 0.42 +2.6
211,124 + LRK53_RS19135 0.56 +0.7
211,124 + LRK53_RS19135 0.56 -1.4
211,214 + LRK53_RS19135 0.69 -1.1
211,361 + +0.8
211,459 + -2.4
211,488 + LRK53_RS19140 0.15 -2.9
211,488 + LRK53_RS19140 0.15 -0.2
211,488 + LRK53_RS19140 0.15 -1.2
211,489 - LRK53_RS19140 0.16 -0.5
211,572 + LRK53_RS19140 0.34 +1.8
211,829 + LRK53_RS19140 0.90 +0.2
211,971 + LRK53_RS19145 0.20 +1.8
211,971 + LRK53_RS19145 0.20 -1.2
211,972 - LRK53_RS19145 0.20 +0.2
211,972 - LRK53_RS19145 0.20 +0.9
211,972 - LRK53_RS19145 0.20 -0.1
211,972 - LRK53_RS19145 0.20 -1.5
211,972 - LRK53_RS19145 0.20 +2.1
211,973 + LRK53_RS19145 0.20 +0.2
212,008 + LRK53_RS19145 0.27 +0.6
212,044 + LRK53_RS19145 0.35 +0.2
212,044 + LRK53_RS19145 0.35 -2.2
212,045 - LRK53_RS19145 0.35 -0.2
212,045 - LRK53_RS19145 0.35 +0.4
212,045 - LRK53_RS19145 0.35 +0.2
212,045 - LRK53_RS19145 0.35 -0.5
212,057 + LRK53_RS19145 0.37 -0.5
212,057 + LRK53_RS19145 0.37 -1.4
212,298 + LRK53_RS19145 0.86 +0.2
212,298 + LRK53_RS19145 0.86 -1.8
212,298 + LRK53_RS19145 0.86 -0.2
212,298 + LRK53_RS19145 0.86 +0.7
212,298 + LRK53_RS19145 0.86 -0.0
212,298 + LRK53_RS19145 0.86 +0.5
212,299 - LRK53_RS19145 0.86 -1.0
212,307 + LRK53_RS19145 0.87 +0.7
212,307 + LRK53_RS19145 0.87 +1.0
212,307 + LRK53_RS19145 0.87 -2.4
212,307 + LRK53_RS19145 0.87 +1.7
212,308 - LRK53_RS19145 0.88 +0.9
212,574 + LRK53_RS19150 0.14 -2.1
212,574 + LRK53_RS19150 0.14 +0.6
212,574 + LRK53_RS19150 0.14 -0.0
212,574 + LRK53_RS19150 0.14 -0.0
212,575 - LRK53_RS19150 0.14 -2.6
212,817 + LRK53_RS19150 0.43 -2.0
212,817 + LRK53_RS19150 0.43 +2.4
212,817 + LRK53_RS19150 0.43 -3.7
212,817 + LRK53_RS19150 0.43 -0.5
212,817 + LRK53_RS19150 0.43 -0.9
212,818 - LRK53_RS19150 0.44 -0.1
212,818 - LRK53_RS19150 0.44 -0.5
212,818 - LRK53_RS19150 0.44 -1.8
212,818 - LRK53_RS19150 0.44 -0.4
212,928 + LRK53_RS19150 0.57 -0.8
212,929 - LRK53_RS19150 0.57 -2.1
212,929 - LRK53_RS19150 0.57 -1.7
213,135 + LRK53_RS19150 0.82 -0.2
213,136 - LRK53_RS19150 0.82 -1.9
213,136 - LRK53_RS19150 0.82 +0.8
213,158 - LRK53_RS19150 0.85 -1.0
213,168 + LRK53_RS19150 0.86 +1.8
213,168 + LRK53_RS19150 0.86 -0.4
213,334 + +0.6
213,334 + -0.8
213,334 + +1.5
213,334 + -0.1
213,335 - -1.5
213,335 - -1.6
213,335 - -0.2
213,335 - +1.3
213,335 - +0.7
213,335 - -0.0
213,335 - -0.3
213,335 - -0.8
213,335 - -2.4
213,335 - +0.4
213,335 - +1.0
213,335 - -0.2
213,335 - +1.3

Or see this region's nucleotide sequence