Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS19100

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS19090 and LRK53_RS19095 are separated by 111 nucleotidesLRK53_RS19095 and LRK53_RS19100 are separated by 57 nucleotidesLRK53_RS19100 and LRK53_RS19105 are separated by 99 nucleotidesLRK53_RS19105 and LRK53_RS19110 are separated by 61 nucleotides LRK53_RS19090: LRK53_RS19090 - hypothetical protein, at 205,372 to 206,109 _RS19090 LRK53_RS19095: LRK53_RS19095 - hypothetical protein, at 206,221 to 206,472 _RS19095 LRK53_RS19100: LRK53_RS19100 - hypothetical protein, at 206,530 to 206,901 _RS19100 LRK53_RS19105: LRK53_RS19105 - hypothetical protein, at 207,001 to 207,444 _RS19105 LRK53_RS19110: LRK53_RS19110 - hypothetical protein, at 207,506 to 207,709 _RS19110 Position (kb) 206 207Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 205.562 kb on - strand, within LRK53_RS19090at 205.682 kb on - strand, within LRK53_RS19090at 205.682 kb on - strand, within LRK53_RS19090at 205.682 kb on - strand, within LRK53_RS19090at 205.682 kb on - strand, within LRK53_RS19090at 205.726 kb on + strand, within LRK53_RS19090at 205.726 kb on + strand, within LRK53_RS19090at 205.726 kb on + strand, within LRK53_RS19090at 205.726 kb on + strand, within LRK53_RS19090at 205.727 kb on - strand, within LRK53_RS19090at 205.727 kb on - strand, within LRK53_RS19090at 205.727 kb on - strand, within LRK53_RS19090at 205.753 kb on + strand, within LRK53_RS19090at 205.753 kb on + strand, within LRK53_RS19090at 205.753 kb on + strand, within LRK53_RS19090at 205.753 kb on + strand, within LRK53_RS19090at 205.753 kb on + strand, within LRK53_RS19090at 205.754 kb on - strand, within LRK53_RS19090at 205.754 kb on - strand, within LRK53_RS19090at 205.754 kb on - strand, within LRK53_RS19090at 205.996 kb on + strand, within LRK53_RS19090at 205.996 kb on + strand, within LRK53_RS19090at 205.996 kb on + strand, within LRK53_RS19090at 205.996 kb on + strand, within LRK53_RS19090at 206.041 kb on + strandat 206.041 kb on + strandat 206.041 kb on + strandat 206.041 kb on + strandat 206.041 kb on + strandat 206.041 kb on + strandat 206.041 kb on + strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.042 kb on - strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.049 kb on + strandat 206.050 kb on - strandat 206.050 kb on - strandat 206.050 kb on - strandat 206.050 kb on - strandat 206.055 kb on + strandat 206.055 kb on + strandat 206.056 kb on - strandat 206.100 kb on + strandat 206.100 kb on + strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.101 kb on - strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.147 kb on + strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.148 kb on - strandat 206.239 kb on + strandat 206.240 kb on - strandat 206.240 kb on - strandat 206.240 kb on - strandat 206.240 kb on - strandat 206.244 kb on + strandat 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.374 kb on + strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.375 kb on - strand, within LRK53_RS19095at 206.581 kb on + strand, within LRK53_RS19100at 206.581 kb on + strand, within LRK53_RS19100at 206.581 kb on + strand, within LRK53_RS19100at 206.582 kb on - strand, within LRK53_RS19100at 206.582 kb on - strand, within LRK53_RS19100at 206.740 kb on + strand, within LRK53_RS19100at 206.842 kb on + strand, within LRK53_RS19100at 206.842 kb on + strand, within LRK53_RS19100at 206.967 kb on + strandat 206.967 kb on + strandat 206.968 kb on - strandat 206.968 kb on - strandat 207.139 kb on + strand, within LRK53_RS19105at 207.139 kb on + strand, within LRK53_RS19105at 207.139 kb on + strand, within LRK53_RS19105at 207.139 kb on + strand, within LRK53_RS19105at 207.139 kb on + strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.140 kb on - strand, within LRK53_RS19105at 207.473 kb on + strandat 207.473 kb on + strandat 207.659 kb on + strand, within LRK53_RS19110at 207.659 kb on + strand, within LRK53_RS19110at 207.659 kb on + strand, within LRK53_RS19110at 207.660 kb on - strand, within LRK53_RS19110at 207.796 kb on + strandat 207.796 kb on + strandat 207.797 kb on - strandat 207.856 kb on + strandat 207.856 kb on + strandat 207.856 kb on + strandat 207.856 kb on + strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.857 kb on - strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.881 kb on + strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strandat 207.882 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
205,562 - LRK53_RS19090 0.26 -0.4
205,682 - LRK53_RS19090 0.42 -0.2
205,682 - LRK53_RS19090 0.42 +0.3
205,682 - LRK53_RS19090 0.42 -1.5
205,682 - LRK53_RS19090 0.42 -1.2
205,726 + LRK53_RS19090 0.48 +1.6
205,726 + LRK53_RS19090 0.48 +0.8
205,726 + LRK53_RS19090 0.48 +0.9
205,726 + LRK53_RS19090 0.48 -2.1
205,727 - LRK53_RS19090 0.48 +0.9
205,727 - LRK53_RS19090 0.48 -1.8
205,727 - LRK53_RS19090 0.48 -2.1
205,753 + LRK53_RS19090 0.52 +1.1
205,753 + LRK53_RS19090 0.52 -1.8
205,753 + LRK53_RS19090 0.52 -1.1
205,753 + LRK53_RS19090 0.52 -1.7
205,753 + LRK53_RS19090 0.52 -0.2
205,754 - LRK53_RS19090 0.52 +1.5
205,754 - LRK53_RS19090 0.52 -0.5
205,754 - LRK53_RS19090 0.52 -1.8
205,996 + LRK53_RS19090 0.85 -1.1
205,996 + LRK53_RS19090 0.85 -1.8
205,996 + LRK53_RS19090 0.85 -1.8
205,996 + LRK53_RS19090 0.85 -0.4
206,041 + -1.4
206,041 + +0.2
206,041 + -1.8
206,041 + -0.4
206,041 + +1.1
206,041 + +0.8
206,041 + -1.3
206,042 - -0.8
206,042 - -0.0
206,042 - +1.3
206,042 - +1.5
206,042 - -0.8
206,042 - -2.0
206,042 - -1.9
206,042 - -0.5
206,042 - +0.2
206,042 - +1.8
206,042 - -1.6
206,042 - +0.3
206,042 - -0.8
206,042 - +0.1
206,042 - -1.2
206,042 - +0.4
206,042 - +0.9
206,042 - +0.2
206,042 - -0.5
206,042 - -0.1
206,042 - +0.2
206,049 + -1.5
206,049 + +0.0
206,049 + -0.9
206,049 + -2.4
206,049 + -1.1
206,049 + -1.0
206,049 + +0.1
206,050 - +0.5
206,050 - +0.3
206,050 - -1.7
206,050 - +1.1
206,055 + -2.4
206,055 + -2.4
206,056 - +1.2
206,100 + +3.2
206,100 + -0.2
206,101 - -2.6
206,101 - -1.9
206,101 - -0.5
206,101 - -0.8
206,101 - -0.2
206,101 - -0.2
206,101 - -1.1
206,101 - -1.8
206,101 - +0.1
206,147 + +1.8
206,147 + -0.0
206,147 + +1.1
206,147 + -1.8
206,147 + +1.7
206,147 + +0.5
206,147 + +1.1
206,147 + -1.7
206,147 + +0.4
206,147 + +0.2
206,147 + -1.4
206,147 + +2.1
206,147 + +0.6
206,147 + +1.2
206,147 + +0.2
206,147 + -0.5
206,147 + +0.1
206,147 + -1.0
206,148 - -0.2
206,148 - -1.0
206,148 - -0.1
206,148 - +1.2
206,148 - -1.0
206,148 - -2.0
206,148 - -1.9
206,148 - -0.7
206,148 - -1.9
206,239 + -0.0
206,240 - -1.0
206,240 - -0.8
206,240 - -0.0
206,240 - +1.4
206,244 + +0.8
206,374 + LRK53_RS19095 0.61 -3.0
206,374 + LRK53_RS19095 0.61 +0.6
206,374 + LRK53_RS19095 0.61 -0.3
206,374 + LRK53_RS19095 0.61 -1.1
206,374 + LRK53_RS19095 0.61 +0.2
206,374 + LRK53_RS19095 0.61 -2.2
206,374 + LRK53_RS19095 0.61 -1.4
206,374 + LRK53_RS19095 0.61 -1.8
206,374 + LRK53_RS19095 0.61 -2.2
206,375 - LRK53_RS19095 0.61 +0.5
206,375 - LRK53_RS19095 0.61 -2.8
206,375 - LRK53_RS19095 0.61 -0.0
206,375 - LRK53_RS19095 0.61 -1.5
206,375 - LRK53_RS19095 0.61 -1.8
206,375 - LRK53_RS19095 0.61 -2.0
206,375 - LRK53_RS19095 0.61 -1.5
206,375 - LRK53_RS19095 0.61 +0.6
206,375 - LRK53_RS19095 0.61 -0.8
206,581 + LRK53_RS19100 0.14 -1.2
206,581 + LRK53_RS19100 0.14 +0.3
206,581 + LRK53_RS19100 0.14 -0.1
206,582 - LRK53_RS19100 0.14 -1.0
206,582 - LRK53_RS19100 0.14 -0.1
206,740 + LRK53_RS19100 0.56 +0.1
206,842 + LRK53_RS19100 0.84 +1.3
206,842 + LRK53_RS19100 0.84 +0.4
206,967 + -0.7
206,967 + +0.8
206,968 - +0.6
206,968 - -1.4
207,139 + LRK53_RS19105 0.31 -0.7
207,139 + LRK53_RS19105 0.31 -0.7
207,139 + LRK53_RS19105 0.31 -1.1
207,139 + LRK53_RS19105 0.31 -0.8
207,139 + LRK53_RS19105 0.31 -0.5
207,140 - LRK53_RS19105 0.31 +1.7
207,140 - LRK53_RS19105 0.31 -0.0
207,140 - LRK53_RS19105 0.31 -0.8
207,140 - LRK53_RS19105 0.31 -0.5
207,140 - LRK53_RS19105 0.31 -1.1
207,140 - LRK53_RS19105 0.31 -1.0
207,140 - LRK53_RS19105 0.31 -1.4
207,473 + -2.1
207,473 + -1.4
207,659 + LRK53_RS19110 0.75 -1.4
207,659 + LRK53_RS19110 0.75 -0.8
207,659 + LRK53_RS19110 0.75 -0.7
207,660 - LRK53_RS19110 0.75 -2.1
207,796 + -1.8
207,796 + +1.1
207,797 - -1.0
207,856 + -1.4
207,856 + +0.8
207,856 + -0.2
207,856 + -1.3
207,857 - +1.9
207,857 - +0.1
207,857 - +2.5
207,857 - -1.7
207,857 - -0.2
207,857 - -2.0
207,857 - -1.2
207,881 + -1.0
207,881 + -0.5
207,881 + -1.7
207,881 + -0.8
207,881 + -1.2
207,881 + +0.1
207,881 + -0.1
207,881 + -0.3
207,881 + -0.2
207,881 + -1.7
207,881 + -1.0
207,881 + +0.8
207,882 - +0.2
207,882 - -0.0
207,882 - -1.4
207,882 - +0.2
207,882 - +0.5
207,882 - +0.1
207,882 - -0.7
207,882 - -1.0
207,882 - +1.4
207,882 - +0.7
207,882 - +0.1
207,882 - -1.0
207,882 - -1.7
207,882 - +0.7
207,882 - -1.5
207,882 - -0.2
207,882 - +0.5

Or see this region's nucleotide sequence