Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18950

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18940 and LRK53_RS18945 are separated by 11 nucleotidesLRK53_RS18945 and LRK53_RS18950 are separated by 300 nucleotidesLRK53_RS18950 and LRK53_RS18955 are separated by 526 nucleotides LRK53_RS18940: LRK53_RS18940 - hypothetical protein, at 183,139 to 183,600 _RS18940 LRK53_RS18945: LRK53_RS18945 - hypothetical protein, at 183,612 to 183,833 _RS18945 LRK53_RS18950: LRK53_RS18950 - hypothetical protein, at 184,134 to 184,583 _RS18950 LRK53_RS18955: LRK53_RS18955 - hypothetical protein, at 185,110 to 185,745 _RS18955 Position (kb) 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 183.134 kb on - strandat 183.134 kb on - strandat 183.134 kb on - strandat 183.134 kb on - strandat 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.310 kb on + strand, within LRK53_RS18940at 183.311 kb on - strand, within LRK53_RS18940at 183.311 kb on - strand, within LRK53_RS18940at 183.325 kb on + strand, within LRK53_RS18940at 183.326 kb on - strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.397 kb on + strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.398 kb on - strand, within LRK53_RS18940at 183.624 kb on + strandat 183.810 kb on + strand, within LRK53_RS18945at 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.811 kb on - strandat 183.873 kb on - strandat 183.890 kb on + strandat 183.983 kb on - strandat 184.095 kb on + strandat 184.095 kb on + strandat 184.096 kb on - strandat 184.096 kb on - strandat 184.096 kb on - strandat 184.107 kb on + strandat 184.107 kb on + strandat 184.108 kb on - strandat 184.108 kb on - strandat 184.113 kb on + strandat 184.113 kb on + strandat 184.114 kb on - strandat 184.114 kb on - strandat 184.114 kb on - strandat 184.139 kb on + strandat 184.140 kb on - strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.173 kb on + strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.174 kb on - strandat 184.264 kb on - strand, within LRK53_RS18950at 184.372 kb on - strand, within LRK53_RS18950at 184.372 kb on - strand, within LRK53_RS18950at 184.683 kb on + strandat 184.683 kb on + strandat 184.683 kb on + strandat 184.684 kb on - strandat 184.946 kb on + strandat 184.947 kb on - strandat 184.947 kb on - strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.026 kb on + strandat 185.027 kb on - strandat 185.056 kb on - strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.096 kb on + strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.097 kb on - strandat 185.100 kb on + strandat 185.138 kb on - strandat 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.184 kb on + strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.185 kb on - strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.285 kb on + strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.286 kb on - strand, within LRK53_RS18955at 185.341 kb on - strand, within LRK53_RS18955at 185.353 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.404 kb on + strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.405 kb on - strand, within LRK53_RS18955at 185.580 kb on - strand, within LRK53_RS18955

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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183,134 - -0.6
183,134 - +1.2
183,134 - +3.0
183,134 - +1.0
183,310 + LRK53_RS18940 0.37 -0.2
183,310 + LRK53_RS18940 0.37 -2.3
183,310 + LRK53_RS18940 0.37 -1.7
183,310 + LRK53_RS18940 0.37 -0.0
183,310 + LRK53_RS18940 0.37 +0.8
183,311 - LRK53_RS18940 0.37 -0.5
183,311 - LRK53_RS18940 0.37 -0.2
183,325 + LRK53_RS18940 0.40 -0.1
183,326 - LRK53_RS18940 0.40 -1.8
183,397 + LRK53_RS18940 0.56 -1.3
183,397 + LRK53_RS18940 0.56 -0.5
183,397 + LRK53_RS18940 0.56 +1.1
183,397 + LRK53_RS18940 0.56 -1.3
183,397 + LRK53_RS18940 0.56 +0.0
183,397 + LRK53_RS18940 0.56 +0.2
183,397 + LRK53_RS18940 0.56 -0.5
183,397 + LRK53_RS18940 0.56 +1.5
183,398 - LRK53_RS18940 0.56 -0.8
183,398 - LRK53_RS18940 0.56 -0.1
183,398 - LRK53_RS18940 0.56 -0.0
183,398 - LRK53_RS18940 0.56 +0.8
183,398 - LRK53_RS18940 0.56 -1.5
183,398 - LRK53_RS18940 0.56 +2.2
183,398 - LRK53_RS18940 0.56 +1.0
183,398 - LRK53_RS18940 0.56 +1.4
183,398 - LRK53_RS18940 0.56 -0.8
183,398 - LRK53_RS18940 0.56 -1.2
183,398 - LRK53_RS18940 0.56 +0.0
183,624 + +0.1
183,810 + LRK53_RS18945 0.89 -2.1
183,811 - -1.5
183,811 - +0.6
183,811 - +0.5
183,811 - -0.0
183,873 - +0.1
183,890 + -0.9
183,983 - +1.4
184,095 + +0.2
184,095 + -2.4
184,096 - -0.3
184,096 - -1.0
184,096 - -1.7
184,107 + -1.4
184,107 + -0.3
184,108 - -1.4
184,108 - -1.4
184,113 + +1.2
184,113 + +1.1
184,114 - -2.2
184,114 - +0.3
184,114 - -2.1
184,139 + +1.4
184,140 - -1.2
184,173 + +1.1
184,173 + +0.4
184,173 + -1.2
184,173 + +0.5
184,174 - -1.8
184,174 - +0.2
184,174 - +0.8
184,174 - +0.8
184,174 - -1.0
184,174 - +0.5
184,174 - -1.8
184,174 - +1.8
184,264 - LRK53_RS18950 0.29 -0.8
184,372 - LRK53_RS18950 0.53 -1.8
184,372 - LRK53_RS18950 0.53 -1.4
184,683 + -0.2
184,683 + +0.8
184,683 + +0.7
184,684 - +0.7
184,946 + -0.6
184,947 - -1.1
184,947 - +0.2
185,026 + +0.5
185,026 + -0.0
185,026 + -0.4
185,027 - +1.2
185,056 - -0.5
185,096 + +1.0
185,096 + +0.8
185,096 + +1.0
185,096 + -1.4
185,096 + -0.7
185,097 - -1.1
185,097 - -1.2
185,097 - -0.2
185,097 - -1.5
185,097 - -1.2
185,097 - +2.6
185,097 - -2.7
185,097 - -1.1
185,100 + +0.3
185,138 - -0.6
185,184 + LRK53_RS18955 0.12 +1.8
185,184 + LRK53_RS18955 0.12 -1.0
185,184 + LRK53_RS18955 0.12 -2.4
185,184 + LRK53_RS18955 0.12 -0.5
185,184 + LRK53_RS18955 0.12 +0.4
185,184 + LRK53_RS18955 0.12 -0.3
185,185 - LRK53_RS18955 0.12 -1.4
185,185 - LRK53_RS18955 0.12 +0.8
185,185 - LRK53_RS18955 0.12 -0.6
185,185 - LRK53_RS18955 0.12 +1.2
185,185 - LRK53_RS18955 0.12 -2.0
185,185 - LRK53_RS18955 0.12 -0.9
185,285 + LRK53_RS18955 0.28 -1.4
185,285 + LRK53_RS18955 0.28 -0.1
185,285 + LRK53_RS18955 0.28 -2.8
185,285 + LRK53_RS18955 0.28 +0.1
185,285 + LRK53_RS18955 0.28 -1.2
185,286 - LRK53_RS18955 0.28 -0.7
185,286 - LRK53_RS18955 0.28 +0.7
185,286 - LRK53_RS18955 0.28 -0.2
185,286 - LRK53_RS18955 0.28 -0.9
185,286 - LRK53_RS18955 0.28 +1.1
185,286 - LRK53_RS18955 0.28 -0.2
185,286 - LRK53_RS18955 0.28 +0.8
185,286 - LRK53_RS18955 0.28 +1.4
185,341 - LRK53_RS18955 0.36 +1.3
185,353 + LRK53_RS18955 0.38 -2.5
185,404 + LRK53_RS18955 0.46 -0.8
185,404 + LRK53_RS18955 0.46 -3.2
185,404 + LRK53_RS18955 0.46 -0.2
185,404 + LRK53_RS18955 0.46 +0.3
185,404 + LRK53_RS18955 0.46 -1.0
185,404 + LRK53_RS18955 0.46 -0.5
185,405 - LRK53_RS18955 0.46 +1.9
185,405 - LRK53_RS18955 0.46 -0.7
185,405 - LRK53_RS18955 0.46 -0.1
185,405 - LRK53_RS18955 0.46 +0.3
185,405 - LRK53_RS18955 0.46 -0.7
185,580 - LRK53_RS18955 0.74 -0.2

Or see this region's nucleotide sequence