Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18805 and LRK53_RS18810 overlap by 7 nucleotides LRK53_RS18810 and LRK53_RS18815 overlap by 17 nucleotides LRK53_RS18815 and LRK53_RS18820 overlap by 4 nucleotides
LRK53_RS18805: LRK53_RS18805 - hypothetical protein, at 151,961 to 153,238
_RS18805
LRK53_RS18810: LRK53_RS18810 - S26 family signal peptidase, at 153,232 to 153,756
_RS18810
LRK53_RS18815: LRK53_RS18815 - hypothetical protein, at 153,740 to 154,123
_RS18815
LRK53_RS18820: LRK53_RS18820 - type IV secretion system protein TraC, at 154,120 to 156,549
_RS18820
Position (kb)
153
154
155 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 152.814 kb on + strand, within LRK53_RS18805 at 152.814 kb on + strand, within LRK53_RS18805 at 152.814 kb on + strand, within LRK53_RS18805 at 152.863 kb on - strand, within LRK53_RS18805 at 152.863 kb on - strand, within LRK53_RS18805 at 152.863 kb on - strand, within LRK53_RS18805 at 152.871 kb on + strand, within LRK53_RS18805 at 152.871 kb on + strand, within LRK53_RS18805 at 152.871 kb on + strand, within LRK53_RS18805 at 152.875 kb on + strand, within LRK53_RS18805 at 152.875 kb on + strand, within LRK53_RS18805 at 152.875 kb on + strand, within LRK53_RS18805 at 152.875 kb on + strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 152.876 kb on - strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.078 kb on + strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.079 kb on - strand, within LRK53_RS18805 at 153.350 kb on + strand, within LRK53_RS18810 at 153.350 kb on + strand, within LRK53_RS18810 at 153.351 kb on - strand, within LRK53_RS18810 at 153.351 kb on - strand, within LRK53_RS18810 at 153.351 kb on - strand, within LRK53_RS18810 at 153.351 kb on - strand, within LRK53_RS18810 at 153.485 kb on + strand, within LRK53_RS18810 at 153.486 kb on - strand, within LRK53_RS18810 at 153.486 kb on - strand, within LRK53_RS18810 at 153.536 kb on + strand, within LRK53_RS18810 at 153.537 kb on - strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.542 kb on + strand, within LRK53_RS18810 at 153.543 kb on - strand, within LRK53_RS18810 at 153.543 kb on - strand, within LRK53_RS18810 at 153.543 kb on - strand, within LRK53_RS18810 at 153.590 kb on + strand, within LRK53_RS18810 at 153.590 kb on + strand, within LRK53_RS18810 at 153.591 kb on - strand, within LRK53_RS18810 at 153.591 kb on - strand, within LRK53_RS18810 at 153.591 kb on - strand, within LRK53_RS18810 at 153.652 kb on + strand, within LRK53_RS18810 at 153.652 kb on + strand, within LRK53_RS18810 at 153.652 kb on + strand, within LRK53_RS18810 at 153.652 kb on + strand, within LRK53_RS18810 at 153.652 kb on + strand, within LRK53_RS18810 at 153.653 kb on - strand, within LRK53_RS18810 at 153.653 kb on - strand, within LRK53_RS18810 at 153.741 kb on + strand at 153.741 kb on + strand at 153.741 kb on + strand at 153.802 kb on - strand, within LRK53_RS18815 at 153.802 kb on - strand, within LRK53_RS18815 at 153.820 kb on - strand, within LRK53_RS18815 at 153.820 kb on - strand, within LRK53_RS18815 at 153.820 kb on - strand, within LRK53_RS18815 at 153.825 kb on + strand, within LRK53_RS18815 at 153.825 kb on + strand, within LRK53_RS18815 at 153.826 kb on - strand, within LRK53_RS18815 at 153.826 kb on - strand, within LRK53_RS18815 at 153.826 kb on - strand, within LRK53_RS18815 at 153.826 kb on - strand, within LRK53_RS18815 at 153.826 kb on - strand, within LRK53_RS18815 at 153.832 kb on + strand, within LRK53_RS18815 at 153.833 kb on - strand, within LRK53_RS18815 at 153.833 kb on - strand, within LRK53_RS18815 at 153.846 kb on + strand, within LRK53_RS18815 at 153.846 kb on + strand, within LRK53_RS18815 at 153.847 kb on - strand, within LRK53_RS18815 at 153.847 kb on - strand, within LRK53_RS18815 at 154.058 kb on + strand, within LRK53_RS18815 at 154.117 kb on + strand at 154.117 kb on + strand at 154.118 kb on - strand at 154.211 kb on + strand at 154.212 kb on - strand at 154.212 kb on - strand at 154.328 kb on + strand at 154.329 kb on - strand at 154.367 kb on + strand, within LRK53_RS18820 at 154.367 kb on + strand, within LRK53_RS18820 at 154.367 kb on + strand, within LRK53_RS18820 at 154.367 kb on + strand, within LRK53_RS18820 at 154.368 kb on - strand, within LRK53_RS18820 at 154.368 kb on - strand, within LRK53_RS18820 at 154.368 kb on - strand, within LRK53_RS18820 at 154.368 kb on - strand, within LRK53_RS18820 at 154.368 kb on - strand, within LRK53_RS18820 at 154.441 kb on + strand, within LRK53_RS18820 at 154.442 kb on - strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.446 kb on + strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.447 kb on - strand, within LRK53_RS18820 at 154.490 kb on + strand, within LRK53_RS18820 at 154.539 kb on + strand, within LRK53_RS18820 at 154.540 kb on - strand, within LRK53_RS18820 at 154.670 kb on + strand, within LRK53_RS18820 at 154.671 kb on - strand, within LRK53_RS18820 at 154.781 kb on + strand, within LRK53_RS18820 at 154.781 kb on + strand, within LRK53_RS18820 at 154.790 kb on + strand, within LRK53_RS18820 at 154.790 kb on + strand, within LRK53_RS18820 at 154.901 kb on + strand, within LRK53_RS18820 at 154.901 kb on + strand, within LRK53_RS18820 at 154.901 kb on + strand, within LRK53_RS18820 at 154.902 kb on - strand, within LRK53_RS18820 at 154.949 kb on + strand, within LRK53_RS18820 at 154.950 kb on - strand, within LRK53_RS18820 at 154.950 kb on - strand, within LRK53_RS18820 at 154.950 kb on - strand, within LRK53_RS18820 at 154.950 kb on - strand, within LRK53_RS18820 at 155.082 kb on - strand, within LRK53_RS18820 at 155.082 kb on - strand, within LRK53_RS18820 at 155.082 kb on - strand, within LRK53_RS18820 at 155.082 kb on - strand, within LRK53_RS18820 at 155.114 kb on + strand, within LRK53_RS18820 at 155.115 kb on - strand, within LRK53_RS18820 at 155.115 kb on - strand, within LRK53_RS18820
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 152,814 + LRK53_RS18805 0.67 +1.0 152,814 + LRK53_RS18805 0.67 -0.4 152,814 + LRK53_RS18805 0.67 -1.6 152,863 - LRK53_RS18805 0.71 -1.4 152,863 - LRK53_RS18805 0.71 -1.9 152,863 - LRK53_RS18805 0.71 +1.1 152,871 + LRK53_RS18805 0.71 +0.4 152,871 + LRK53_RS18805 0.71 -1.0 152,871 + LRK53_RS18805 0.71 +0.4 152,875 + LRK53_RS18805 0.72 -1.0 152,875 + LRK53_RS18805 0.72 -1.4 152,875 + LRK53_RS18805 0.72 +0.1 152,875 + LRK53_RS18805 0.72 -2.0 152,876 - LRK53_RS18805 0.72 -0.2 152,876 - LRK53_RS18805 0.72 +0.2 152,876 - LRK53_RS18805 0.72 -0.8 152,876 - LRK53_RS18805 0.72 -2.3 152,876 - LRK53_RS18805 0.72 +0.8 152,876 - LRK53_RS18805 0.72 -1.4 153,078 + LRK53_RS18805 0.87 +0.7 153,078 + LRK53_RS18805 0.87 -1.4 153,078 + LRK53_RS18805 0.87 +0.5 153,078 + LRK53_RS18805 0.87 +0.3 153,078 + LRK53_RS18805 0.87 +1.3 153,078 + LRK53_RS18805 0.87 -0.2 153,078 + LRK53_RS18805 0.87 -1.0 153,078 + LRK53_RS18805 0.87 +0.2 153,078 + LRK53_RS18805 0.87 -1.3 153,078 + LRK53_RS18805 0.87 -0.0 153,078 + LRK53_RS18805 0.87 -1.8 153,078 + LRK53_RS18805 0.87 -1.0 153,078 + LRK53_RS18805 0.87 -1.7 153,078 + LRK53_RS18805 0.87 +1.3 153,078 + LRK53_RS18805 0.87 -0.4 153,078 + LRK53_RS18805 0.87 +1.0 153,078 + LRK53_RS18805 0.87 +1.0 153,079 - LRK53_RS18805 0.87 -1.0 153,079 - LRK53_RS18805 0.87 -0.5 153,079 - LRK53_RS18805 0.87 +0.4 153,079 - LRK53_RS18805 0.87 -1.0 153,079 - LRK53_RS18805 0.87 -1.4 153,079 - LRK53_RS18805 0.87 -1.7 153,079 - LRK53_RS18805 0.87 +1.4 153,079 - LRK53_RS18805 0.87 -1.7 153,079 - LRK53_RS18805 0.87 -1.0 153,079 - LRK53_RS18805 0.87 -1.8 153,079 - LRK53_RS18805 0.87 -0.8 153,079 - LRK53_RS18805 0.87 -1.8 153,079 - LRK53_RS18805 0.87 -0.8 153,079 - LRK53_RS18805 0.87 -0.5 153,350 + LRK53_RS18810 0.22 -0.8 153,350 + LRK53_RS18810 0.22 -0.5 153,351 - LRK53_RS18810 0.23 -0.8 153,351 - LRK53_RS18810 0.23 +0.3 153,351 - LRK53_RS18810 0.23 -1.7 153,351 - LRK53_RS18810 0.23 -0.4 153,485 + LRK53_RS18810 0.48 +0.5 153,486 - LRK53_RS18810 0.48 +0.3 153,486 - LRK53_RS18810 0.48 -0.4 153,536 + LRK53_RS18810 0.58 -0.1 153,537 - LRK53_RS18810 0.58 -1.9 153,542 + LRK53_RS18810 0.59 +0.5 153,542 + LRK53_RS18810 0.59 +1.6 153,542 + LRK53_RS18810 0.59 +0.9 153,542 + LRK53_RS18810 0.59 +0.6 153,542 + LRK53_RS18810 0.59 +2.0 153,542 + LRK53_RS18810 0.59 +0.2 153,542 + LRK53_RS18810 0.59 +1.4 153,542 + LRK53_RS18810 0.59 -1.2 153,543 - LRK53_RS18810 0.59 +0.1 153,543 - LRK53_RS18810 0.59 +0.1 153,543 - LRK53_RS18810 0.59 -0.4 153,590 + LRK53_RS18810 0.68 -1.2 153,590 + LRK53_RS18810 0.68 -1.6 153,591 - LRK53_RS18810 0.68 -0.4 153,591 - LRK53_RS18810 0.68 -2.3 153,591 - LRK53_RS18810 0.68 +2.8 153,652 + LRK53_RS18810 0.80 +1.8 153,652 + LRK53_RS18810 0.80 -0.5 153,652 + LRK53_RS18810 0.80 -2.2 153,652 + LRK53_RS18810 0.80 -0.2 153,652 + LRK53_RS18810 0.80 -0.1 153,653 - LRK53_RS18810 0.80 -0.3 153,653 - LRK53_RS18810 0.80 -3.1 153,741 + +0.4 153,741 + +0.8 153,741 + +0.8 153,802 - LRK53_RS18815 0.16 -0.9 153,802 - LRK53_RS18815 0.16 -0.8 153,820 - LRK53_RS18815 0.21 -1.1 153,820 - LRK53_RS18815 0.21 +1.8 153,820 - LRK53_RS18815 0.21 -2.2 153,825 + LRK53_RS18815 0.22 -1.2 153,825 + LRK53_RS18815 0.22 +2.1 153,826 - LRK53_RS18815 0.22 -0.2 153,826 - LRK53_RS18815 0.22 -0.4 153,826 - LRK53_RS18815 0.22 +3.1 153,826 - LRK53_RS18815 0.22 +0.5 153,826 - LRK53_RS18815 0.22 -0.8 153,832 + LRK53_RS18815 0.24 +2.7 153,833 - LRK53_RS18815 0.24 +0.8 153,833 - LRK53_RS18815 0.24 +0.2 153,846 + LRK53_RS18815 0.28 +0.2 153,846 + LRK53_RS18815 0.28 -1.1 153,847 - LRK53_RS18815 0.28 -1.4 153,847 - LRK53_RS18815 0.28 -0.8 154,058 + LRK53_RS18815 0.83 +0.4 154,117 + -1.2 154,117 + -1.4 154,118 - -0.9 154,211 + +0.0 154,212 - +1.1 154,212 - +1.2 154,328 + +1.1 154,329 - +0.1 154,367 + LRK53_RS18820 0.10 -1.7 154,367 + LRK53_RS18820 0.10 -1.5 154,367 + LRK53_RS18820 0.10 -0.8 154,367 + LRK53_RS18820 0.10 +2.0 154,368 - LRK53_RS18820 0.10 -1.0 154,368 - LRK53_RS18820 0.10 -0.7 154,368 - LRK53_RS18820 0.10 -1.1 154,368 - LRK53_RS18820 0.10 +1.2 154,368 - LRK53_RS18820 0.10 -0.4 154,441 + LRK53_RS18820 0.13 +0.3 154,442 - LRK53_RS18820 0.13 -1.9 154,446 + LRK53_RS18820 0.13 -2.1 154,446 + LRK53_RS18820 0.13 -2.7 154,446 + LRK53_RS18820 0.13 -0.1 154,446 + LRK53_RS18820 0.13 +0.6 154,446 + LRK53_RS18820 0.13 -0.1 154,446 + LRK53_RS18820 0.13 +0.3 154,446 + LRK53_RS18820 0.13 -2.5 154,447 - LRK53_RS18820 0.13 +1.1 154,447 - LRK53_RS18820 0.13 -0.5 154,447 - LRK53_RS18820 0.13 -1.8 154,447 - LRK53_RS18820 0.13 +0.8 154,447 - LRK53_RS18820 0.13 -0.1 154,447 - LRK53_RS18820 0.13 -1.1 154,447 - LRK53_RS18820 0.13 -0.8 154,447 - LRK53_RS18820 0.13 +1.3 154,447 - LRK53_RS18820 0.13 -1.4 154,490 + LRK53_RS18820 0.15 -1.5 154,539 + LRK53_RS18820 0.17 -1.7 154,540 - LRK53_RS18820 0.17 +0.2 154,670 + LRK53_RS18820 0.23 +0.9 154,671 - LRK53_RS18820 0.23 -0.8 154,781 + LRK53_RS18820 0.27 -1.2 154,781 + LRK53_RS18820 0.27 +1.6 154,790 + LRK53_RS18820 0.28 +0.8 154,790 + LRK53_RS18820 0.28 -0.5 154,901 + LRK53_RS18820 0.32 -2.7 154,901 + LRK53_RS18820 0.32 +0.0 154,901 + LRK53_RS18820 0.32 -3.0 154,902 - LRK53_RS18820 0.32 -0.6 154,949 + LRK53_RS18820 0.34 +0.3 154,950 - LRK53_RS18820 0.34 +1.3 154,950 - LRK53_RS18820 0.34 -1.0 154,950 - LRK53_RS18820 0.34 -1.7 154,950 - LRK53_RS18820 0.34 +2.2 155,082 - LRK53_RS18820 0.40 -1.5 155,082 - LRK53_RS18820 0.40 +0.5 155,082 - LRK53_RS18820 0.40 +0.3 155,082 - LRK53_RS18820 0.40 +1.2 155,114 + LRK53_RS18820 0.41 +1.4 155,115 - LRK53_RS18820 0.41 -1.9 155,115 - LRK53_RS18820 0.41 +0.5
Or see this region's nucleotide sequence