Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18415 and LRK53_RS18420 are separated by 137 nucleotides LRK53_RS18420 and LRK53_RS18425 are separated by 101 nucleotides LRK53_RS18425 and LRK53_RS18430 are separated by 97 nucleotides
LRK53_RS18415: LRK53_RS18415 - hypothetical protein, at 58,590 to 59,072
_RS18415
LRK53_RS18420: LRK53_RS18420 - hypothetical protein, at 59,210 to 59,743
_RS18420
LRK53_RS18425: LRK53_RS18425 - hypothetical protein, at 59,845 to 60,381
_RS18425
LRK53_RS18430: LRK53_RS18430 - hypothetical protein, at 60,479 to 61,420
_RS18430
Position (kb) 59
60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 59.093 kb on + strand at 59.093 kb on + strand at 59.094 kb on - strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.195 kb on + strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.196 kb on - strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.224 kb on + strand at 59.288 kb on + strand, within LRK53_RS18420 at 59.499 kb on - strand, within LRK53_RS18420 at 59.570 kb on + strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.655 kb on - strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.656 kb on + strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.657 kb on - strand, within LRK53_RS18420 at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.694 kb on + strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.695 kb on - strand at 59.710 kb on + strand at 59.773 kb on - strand at 59.955 kb on + strand, within LRK53_RS18425 at 59.955 kb on + strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 59.978 kb on + strand, within LRK53_RS18425 at 60.005 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.033 kb on + strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.034 kb on - strand, within LRK53_RS18425 at 60.315 kb on + strand, within LRK53_RS18425 at 60.425 kb on + strand at 60.426 kb on - strand at 60.593 kb on + strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.594 kb on - strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.671 kb on + strand, within LRK53_RS18430 at 60.672 kb on - strand, within LRK53_RS18430 at 60.672 kb on - strand, within LRK53_RS18430 at 60.897 kb on - strand, within LRK53_RS18430 at 61.076 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.206 kb on + strand, within LRK53_RS18430 at 61.207 kb on - strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.250 kb on + strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430 at 61.251 kb on - strand, within LRK53_RS18430
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 59,093 + +1.0 59,093 + -0.2 59,094 - -0.2 59,195 + -0.2 59,195 + +1.1 59,195 + -1.8 59,195 + +0.3 59,196 - +1.4 59,196 - -1.8 59,196 - +1.5 59,196 - -2.2 59,196 - +0.9 59,224 + -0.4 59,224 + -1.5 59,224 + -0.1 59,224 + -1.4 59,224 + -2.0 59,288 + LRK53_RS18420 0.15 -1.2 59,499 - LRK53_RS18420 0.54 -0.8 59,570 + LRK53_RS18420 0.67 -2.2 59,655 - LRK53_RS18420 0.83 +1.4 59,655 - LRK53_RS18420 0.83 -0.3 59,655 - LRK53_RS18420 0.83 -0.3 59,656 + LRK53_RS18420 0.84 -0.0 59,656 + LRK53_RS18420 0.84 -1.0 59,656 + LRK53_RS18420 0.84 +0.4 59,656 + LRK53_RS18420 0.84 +0.6 59,656 + LRK53_RS18420 0.84 -0.8 59,656 + LRK53_RS18420 0.84 -1.5 59,656 + LRK53_RS18420 0.84 +1.4 59,656 + LRK53_RS18420 0.84 +0.1 59,657 - LRK53_RS18420 0.84 -0.0 59,657 - LRK53_RS18420 0.84 -2.0 59,657 - LRK53_RS18420 0.84 -1.2 59,657 - LRK53_RS18420 0.84 -0.6 59,657 - LRK53_RS18420 0.84 +0.6 59,694 + +0.6 59,694 + +1.8 59,694 + -0.2 59,694 + -1.2 59,695 - -0.4 59,695 - -0.2 59,695 - -1.5 59,695 - -0.4 59,710 + -1.0 59,773 - -1.4 59,955 + LRK53_RS18425 0.20 +0.3 59,955 + LRK53_RS18425 0.20 -0.4 59,978 + LRK53_RS18425 0.25 +0.2 59,978 + LRK53_RS18425 0.25 +0.5 60,005 + LRK53_RS18425 0.30 +0.3 60,033 + LRK53_RS18425 0.35 -2.3 60,033 + LRK53_RS18425 0.35 +2.8 60,033 + LRK53_RS18425 0.35 -1.3 60,033 + LRK53_RS18425 0.35 -3.1 60,033 + LRK53_RS18425 0.35 +0.9 60,033 + LRK53_RS18425 0.35 -2.4 60,033 + LRK53_RS18425 0.35 +0.4 60,033 + LRK53_RS18425 0.35 +0.1 60,033 + LRK53_RS18425 0.35 -1.0 60,034 - LRK53_RS18425 0.35 +1.0 60,034 - LRK53_RS18425 0.35 -1.4 60,034 - LRK53_RS18425 0.35 +0.2 60,034 - LRK53_RS18425 0.35 -1.7 60,034 - LRK53_RS18425 0.35 -0.5 60,034 - LRK53_RS18425 0.35 -0.4 60,034 - LRK53_RS18425 0.35 -0.8 60,034 - LRK53_RS18425 0.35 +0.8 60,034 - LRK53_RS18425 0.35 +0.6 60,034 - LRK53_RS18425 0.35 +1.4 60,315 + LRK53_RS18425 0.88 -1.3 60,425 + +0.5 60,426 - -0.8 60,593 + LRK53_RS18430 0.12 +0.4 60,594 - LRK53_RS18430 0.12 -1.2 60,594 - LRK53_RS18430 0.12 -1.3 60,671 + LRK53_RS18430 0.20 +0.5 60,671 + LRK53_RS18430 0.20 -1.7 60,671 + LRK53_RS18430 0.20 -0.0 60,672 - LRK53_RS18430 0.20 +0.5 60,672 - LRK53_RS18430 0.20 +1.4 60,897 - LRK53_RS18430 0.44 -0.6 61,076 + LRK53_RS18430 0.63 +0.6 61,206 + LRK53_RS18430 0.77 -1.0 61,206 + LRK53_RS18430 0.77 +1.3 61,207 - LRK53_RS18430 0.77 +0.5 61,250 + LRK53_RS18430 0.82 -1.5 61,250 + LRK53_RS18430 0.82 -0.6 61,251 - LRK53_RS18430 0.82 -0.2 61,251 - LRK53_RS18430 0.82 -0.8 61,251 - LRK53_RS18430 0.82 -0.2 61,251 - LRK53_RS18430 0.82 -0.3
Or see this region's nucleotide sequence