Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18400

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18390 and LRK53_RS18395 are separated by 135 nucleotidesLRK53_RS18395 and LRK53_RS18400 overlap by 56 nucleotidesLRK53_RS18400 and LRK53_RS18405 are separated by 222 nucleotides LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448 _RS18390 LRK53_RS18395: LRK53_RS18395 - DUF6338 family protein, at 53,584 to 54,345 _RS18395 LRK53_RS18400: LRK53_RS18400 - hypothetical protein, at 54,290 to 54,532 _RS18400 LRK53_RS18405: LRK53_RS18405 - ATP-dependent helicase, at 54,755 to 57,094 _RS18405 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 53.320 kb on + strand, within LRK53_RS18390at 53.320 kb on + strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390at 53.321 kb on - strand, within LRK53_RS18390at 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.644 kb on + strandat 53.763 kb on - strand, within LRK53_RS18395at 53.859 kb on + strand, within LRK53_RS18395at 53.859 kb on + strand, within LRK53_RS18395at 53.860 kb on - strand, within LRK53_RS18395at 53.860 kb on - strand, within LRK53_RS18395at 53.917 kb on + strand, within LRK53_RS18395at 54.184 kb on + strand, within LRK53_RS18395at 54.284 kb on + strandat 54.284 kb on + strandat 54.284 kb on + strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.285 kb on - strandat 54.442 kb on + strand, within LRK53_RS18400at 54.442 kb on + strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400at 54.443 kb on - strand, within LRK53_RS18400at 54.480 kb on - strand, within LRK53_RS18400at 54.530 kb on + strandat 54.530 kb on + strandat 54.530 kb on + strandat 54.530 kb on + strandat 54.530 kb on + strandat 54.531 kb on - strandat 54.531 kb on - strandat 54.531 kb on - strandat 54.531 kb on - strandat 54.719 kb on + strandat 54.719 kb on + strandat 54.719 kb on + strandat 54.719 kb on + strandat 54.720 kb on - strandat 54.720 kb on - strandat 54.720 kb on - strandat 54.720 kb on - strandat 54.720 kb on - strandat 54.891 kb on + strandat 55.178 kb on + strand, within LRK53_RS18405at 55.178 kb on + strand, within LRK53_RS18405at 55.178 kb on + strand, within LRK53_RS18405at 55.179 kb on - strand, within LRK53_RS18405at 55.299 kb on + strand, within LRK53_RS18405at 55.299 kb on + strand, within LRK53_RS18405at 55.300 kb on - strand, within LRK53_RS18405at 55.300 kb on - strand, within LRK53_RS18405at 55.300 kb on - strand, within LRK53_RS18405at 55.300 kb on - strand, within LRK53_RS18405at 55.334 kb on + strand, within LRK53_RS18405at 55.335 kb on - strand, within LRK53_RS18405at 55.349 kb on + strand, within LRK53_RS18405at 55.350 kb on - strand, within LRK53_RS18405at 55.364 kb on + strand, within LRK53_RS18405at 55.364 kb on + strand, within LRK53_RS18405at 55.364 kb on + strand, within LRK53_RS18405at 55.364 kb on + strand, within LRK53_RS18405at 55.364 kb on + strand, within LRK53_RS18405at 55.365 kb on - strand, within LRK53_RS18405at 55.365 kb on - strand, within LRK53_RS18405at 55.365 kb on - strand, within LRK53_RS18405at 55.365 kb on - strand, within LRK53_RS18405at 55.529 kb on + strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405at 55.530 kb on - strand, within LRK53_RS18405

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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53,320 + LRK53_RS18390 0.77 +1.3
53,320 + LRK53_RS18390 0.77 -1.6
53,321 - LRK53_RS18390 0.77 -1.5
53,321 - LRK53_RS18390 0.77 +1.0
53,644 + -1.5
53,644 + +0.2
53,644 + -1.5
53,644 + -0.2
53,763 - LRK53_RS18395 0.23 +0.3
53,859 + LRK53_RS18395 0.36 -2.3
53,859 + LRK53_RS18395 0.36 +0.3
53,860 - LRK53_RS18395 0.36 -1.9
53,860 - LRK53_RS18395 0.36 +1.2
53,917 + LRK53_RS18395 0.44 -1.5
54,184 + LRK53_RS18395 0.79 -1.0
54,284 + -1.9
54,284 + -2.0
54,284 + -1.9
54,285 - -2.7
54,285 - -0.9
54,285 - +2.2
54,285 - +0.5
54,442 + LRK53_RS18400 0.63 -1.3
54,442 + LRK53_RS18400 0.63 +1.3
54,443 - LRK53_RS18400 0.63 -0.4
54,443 - LRK53_RS18400 0.63 -0.0
54,443 - LRK53_RS18400 0.63 +1.8
54,480 - LRK53_RS18400 0.78 +0.1
54,530 + -0.2
54,530 + +0.1
54,530 + -0.8
54,530 + +0.7
54,530 + +0.4
54,531 - -1.9
54,531 - -1.6
54,531 - +1.4
54,531 - +0.3
54,719 + +0.8
54,719 + +0.1
54,719 + -0.7
54,719 + -2.5
54,720 - -1.8
54,720 - -0.8
54,720 - -2.6
54,720 - -1.4
54,720 - -0.9
54,891 + -1.2
55,178 + LRK53_RS18405 0.18 +0.6
55,178 + LRK53_RS18405 0.18 +0.5
55,178 + LRK53_RS18405 0.18 -1.6
55,179 - LRK53_RS18405 0.18 +1.3
55,299 + LRK53_RS18405 0.23 +1.1
55,299 + LRK53_RS18405 0.23 +2.6
55,300 - LRK53_RS18405 0.23 -2.2
55,300 - LRK53_RS18405 0.23 -1.7
55,300 - LRK53_RS18405 0.23 -0.8
55,300 - LRK53_RS18405 0.23 -3.1
55,334 + LRK53_RS18405 0.25 +0.5
55,335 - LRK53_RS18405 0.25 +0.6
55,349 + LRK53_RS18405 0.25 -0.9
55,350 - LRK53_RS18405 0.25 +0.5
55,364 + LRK53_RS18405 0.26 -0.2
55,364 + LRK53_RS18405 0.26 -1.8
55,364 + LRK53_RS18405 0.26 -0.8
55,364 + LRK53_RS18405 0.26 -1.2
55,364 + LRK53_RS18405 0.26 -1.0
55,365 - LRK53_RS18405 0.26 -0.1
55,365 - LRK53_RS18405 0.26 +1.1
55,365 - LRK53_RS18405 0.26 -0.2
55,365 - LRK53_RS18405 0.26 +3.2
55,529 + LRK53_RS18405 0.33 -2.1
55,530 - LRK53_RS18405 0.33 -0.5
55,530 - LRK53_RS18405 0.33 +1.0
55,530 - LRK53_RS18405 0.33 -0.2
55,530 - LRK53_RS18405 0.33 +2.1
55,530 - LRK53_RS18405 0.33 +1.1
55,530 - LRK53_RS18405 0.33 +1.1
55,530 - LRK53_RS18405 0.33 -0.6

Or see this region's nucleotide sequence