Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18380 and LRK53_RS18385 are separated by 2 nucleotides LRK53_RS18385 and LRK53_RS18390 are separated by 84 nucleotides LRK53_RS18390 and LRK53_RS18395 are separated by 135 nucleotides LRK53_RS18395 and LRK53_RS18400 overlap by 56 nucleotides
LRK53_RS18380: LRK53_RS18380 - toprim domain-containing protein, at 51,263 to 52,525
_RS18380
LRK53_RS18385: LRK53_RS18385 - hypothetical protein, at 52,528 to 52,815
_RS18385
LRK53_RS18390: LRK53_RS18390 - hypothetical protein, at 52,900 to 53,448
_RS18390
LRK53_RS18395: LRK53_RS18395 - DUF6338 family protein, at 53,584 to 54,345
_RS18395
LRK53_RS18400: LRK53_RS18400 - hypothetical protein, at 54,290 to 54,532
_RS18400
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 51.902 kb on + strand, within LRK53_RS18380 at 51.903 kb on - strand, within LRK53_RS18380 at 51.918 kb on - strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.992 kb on + strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 51.993 kb on - strand, within LRK53_RS18380 at 52.102 kb on + strand, within LRK53_RS18380 at 52.102 kb on + strand, within LRK53_RS18380 at 52.103 kb on - strand, within LRK53_RS18380 at 52.103 kb on - strand, within LRK53_RS18380 at 52.103 kb on - strand, within LRK53_RS18380 at 52.103 kb on - strand, within LRK53_RS18380 at 52.299 kb on - strand, within LRK53_RS18380 at 52.299 kb on - strand, within LRK53_RS18380 at 52.459 kb on + strand at 52.459 kb on + strand at 52.459 kb on + strand at 52.459 kb on + strand at 52.460 kb on - strand at 52.460 kb on - strand at 52.523 kb on + strand at 52.523 kb on + strand at 52.524 kb on - strand at 52.524 kb on - strand at 52.524 kb on - strand at 52.554 kb on + strand at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.584 kb on + strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.585 kb on - strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.627 kb on + strand, within LRK53_RS18385 at 52.726 kb on + strand, within LRK53_RS18385 at 52.814 kb on - strand at 52.840 kb on - strand at 52.853 kb on + strand at 52.895 kb on + strand at 52.895 kb on + strand at 52.895 kb on + strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 52.896 kb on - strand at 53.131 kb on - strand, within LRK53_RS18390 at 53.320 kb on + strand, within LRK53_RS18390 at 53.320 kb on + strand, within LRK53_RS18390 at 53.321 kb on - strand, within LRK53_RS18390 at 53.321 kb on - strand, within LRK53_RS18390 at 53.644 kb on + strand at 53.644 kb on + strand at 53.644 kb on + strand at 53.644 kb on + strand at 53.763 kb on - strand, within LRK53_RS18395 at 53.859 kb on + strand, within LRK53_RS18395 at 53.859 kb on + strand, within LRK53_RS18395 at 53.860 kb on - strand, within LRK53_RS18395 at 53.860 kb on - strand, within LRK53_RS18395 at 53.917 kb on + strand, within LRK53_RS18395 at 54.184 kb on + strand, within LRK53_RS18395 at 54.284 kb on + strand at 54.284 kb on + strand at 54.284 kb on + strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.285 kb on - strand at 54.442 kb on + strand, within LRK53_RS18400 at 54.442 kb on + strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400 at 54.443 kb on - strand, within LRK53_RS18400
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 51,902 + LRK53_RS18380 0.51 -0.0 51,903 - LRK53_RS18380 0.51 -0.7 51,918 - LRK53_RS18380 0.52 -1.4 51,992 + LRK53_RS18380 0.58 +2.0 51,992 + LRK53_RS18380 0.58 -0.1 51,992 + LRK53_RS18380 0.58 +1.1 51,992 + LRK53_RS18380 0.58 -0.7 51,992 + LRK53_RS18380 0.58 +1.1 51,992 + LRK53_RS18380 0.58 -0.5 51,992 + LRK53_RS18380 0.58 -0.0 51,993 - LRK53_RS18380 0.58 -0.2 51,993 - LRK53_RS18380 0.58 -3.2 51,993 - LRK53_RS18380 0.58 -0.9 51,993 - LRK53_RS18380 0.58 -0.7 51,993 - LRK53_RS18380 0.58 -3.7 51,993 - LRK53_RS18380 0.58 +0.2 51,993 - LRK53_RS18380 0.58 +0.8 51,993 - LRK53_RS18380 0.58 -0.1 51,993 - LRK53_RS18380 0.58 -0.5 52,102 + LRK53_RS18380 0.66 -1.7 52,102 + LRK53_RS18380 0.66 -1.4 52,103 - LRK53_RS18380 0.67 -0.0 52,103 - LRK53_RS18380 0.67 -0.3 52,103 - LRK53_RS18380 0.67 -1.0 52,103 - LRK53_RS18380 0.67 +0.2 52,299 - LRK53_RS18380 0.82 -0.8 52,299 - LRK53_RS18380 0.82 -0.8 52,459 + -1.0 52,459 + -0.5 52,459 + -1.5 52,459 + +0.6 52,460 - -1.7 52,460 - +0.2 52,523 + -0.2 52,523 + +1.1 52,524 - +0.5 52,524 - -0.6 52,524 - +0.2 52,554 + -1.2 52,584 + LRK53_RS18385 0.19 -0.3 52,584 + LRK53_RS18385 0.19 +2.0 52,584 + LRK53_RS18385 0.19 -0.9 52,584 + LRK53_RS18385 0.19 -1.2 52,584 + LRK53_RS18385 0.19 -0.7 52,584 + LRK53_RS18385 0.19 +1.4 52,584 + LRK53_RS18385 0.19 -1.5 52,585 - LRK53_RS18385 0.20 -0.7 52,585 - LRK53_RS18385 0.20 -0.2 52,585 - LRK53_RS18385 0.20 -0.0 52,585 - LRK53_RS18385 0.20 +0.3 52,585 - LRK53_RS18385 0.20 -1.2 52,585 - LRK53_RS18385 0.20 -2.7 52,585 - LRK53_RS18385 0.20 -2.2 52,627 + LRK53_RS18385 0.34 -0.4 52,627 + LRK53_RS18385 0.34 -1.2 52,627 + LRK53_RS18385 0.34 -0.2 52,627 + LRK53_RS18385 0.34 +1.5 52,726 + LRK53_RS18385 0.69 -0.7 52,814 - -0.8 52,840 - -1.5 52,853 + -0.0 52,895 + -1.0 52,895 + -0.7 52,895 + +0.4 52,896 - -0.1 52,896 - -2.4 52,896 - +1.6 52,896 - +0.4 52,896 - -0.7 52,896 - +1.2 53,131 - LRK53_RS18390 0.42 +0.8 53,320 + LRK53_RS18390 0.77 +1.3 53,320 + LRK53_RS18390 0.77 -1.6 53,321 - LRK53_RS18390 0.77 -1.5 53,321 - LRK53_RS18390 0.77 +1.0 53,644 + -1.5 53,644 + +0.2 53,644 + -1.5 53,644 + -0.2 53,763 - LRK53_RS18395 0.23 +0.3 53,859 + LRK53_RS18395 0.36 -2.3 53,859 + LRK53_RS18395 0.36 +0.3 53,860 - LRK53_RS18395 0.36 -1.9 53,860 - LRK53_RS18395 0.36 +1.2 53,917 + LRK53_RS18395 0.44 -1.5 54,184 + LRK53_RS18395 0.79 -1.0 54,284 + -1.9 54,284 + -2.0 54,284 + -1.9 54,285 - -2.7 54,285 - -0.9 54,285 - +2.2 54,285 - +0.5 54,442 + LRK53_RS18400 0.63 -1.3 54,442 + LRK53_RS18400 0.63 +1.3 54,443 - LRK53_RS18400 0.63 -0.4 54,443 - LRK53_RS18400 0.63 -0.0 54,443 - LRK53_RS18400 0.63 +1.8
Or see this region's nucleotide sequence