Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18350

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS18340 and LRK53_RS18345 are separated by 84 nucleotidesLRK53_RS18345 and LRK53_RS18350 are separated by 104 nucleotidesLRK53_RS18350 and LRK53_RS18355 are separated by 256 nucleotides LRK53_RS18340: LRK53_RS18340 - hypothetical protein, at 41,774 to 42,433 _RS18340 LRK53_RS18345: LRK53_RS18345 - hypothetical protein, at 42,518 to 43,174 _RS18345 LRK53_RS18350: LRK53_RS18350 - ATP-binding protein, at 43,279 to 44,907 _RS18350 LRK53_RS18355: LRK53_RS18355 - hypothetical protein, at 45,164 to 46,021 _RS18355 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 42.323 kb on + strand, within LRK53_RS18340at 42.323 kb on + strand, within LRK53_RS18340at 42.323 kb on + strand, within LRK53_RS18340at 42.323 kb on + strand, within LRK53_RS18340at 42.324 kb on - strand, within LRK53_RS18340at 42.324 kb on - strand, within LRK53_RS18340at 42.324 kb on - strand, within LRK53_RS18340at 42.324 kb on - strand, within LRK53_RS18340at 42.431 kb on + strandat 42.431 kb on + strandat 42.536 kb on + strandat 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.617 kb on + strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.618 kb on - strand, within LRK53_RS18345at 42.630 kb on + strand, within LRK53_RS18345at 42.630 kb on + strand, within LRK53_RS18345at 42.631 kb on - strand, within LRK53_RS18345at 42.720 kb on + strand, within LRK53_RS18345at 42.793 kb on + strand, within LRK53_RS18345at 42.794 kb on - strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.836 kb on + strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.837 kb on - strand, within LRK53_RS18345at 42.844 kb on + strand, within LRK53_RS18345at 42.844 kb on + strand, within LRK53_RS18345at 42.844 kb on + strand, within LRK53_RS18345at 42.845 kb on - strand, within LRK53_RS18345at 42.845 kb on - strand, within LRK53_RS18345at 42.845 kb on - strand, within LRK53_RS18345at 42.848 kb on + strand, within LRK53_RS18345at 42.848 kb on + strand, within LRK53_RS18345at 42.848 kb on + strand, within LRK53_RS18345at 42.997 kb on + strand, within LRK53_RS18345at 42.997 kb on + strand, within LRK53_RS18345at 42.997 kb on + strand, within LRK53_RS18345at 42.997 kb on + strand, within LRK53_RS18345at 42.997 kb on + strand, within LRK53_RS18345at 42.998 kb on - strand, within LRK53_RS18345at 42.998 kb on - strand, within LRK53_RS18345at 42.998 kb on - strand, within LRK53_RS18345at 43.001 kb on + strand, within LRK53_RS18345at 43.001 kb on + strand, within LRK53_RS18345at 43.001 kb on + strand, within LRK53_RS18345at 43.001 kb on + strand, within LRK53_RS18345at 43.002 kb on - strand, within LRK53_RS18345at 43.002 kb on - strand, within LRK53_RS18345at 43.002 kb on - strand, within LRK53_RS18345at 43.002 kb on - strand, within LRK53_RS18345at 43.131 kb on - strandat 43.173 kb on - strandat 43.265 kb on + strandat 43.265 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.271 kb on + strandat 43.272 kb on - strandat 43.272 kb on - strandat 43.284 kb on + strandat 43.284 kb on + strandat 43.469 kb on + strand, within LRK53_RS18350at 43.469 kb on + strand, within LRK53_RS18350at 43.470 kb on - strand, within LRK53_RS18350at 43.470 kb on - strand, within LRK53_RS18350at 43.470 kb on - strand, within LRK53_RS18350at 43.470 kb on - strand, within LRK53_RS18350at 43.561 kb on + strand, within LRK53_RS18350at 43.561 kb on + strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.562 kb on - strand, within LRK53_RS18350at 43.597 kb on + strand, within LRK53_RS18350at 43.598 kb on - strand, within LRK53_RS18350at 43.598 kb on - strand, within LRK53_RS18350at 43.709 kb on - strand, within LRK53_RS18350at 43.742 kb on + strand, within LRK53_RS18350at 43.742 kb on + strand, within LRK53_RS18350at 43.743 kb on - strand, within LRK53_RS18350at 43.743 kb on - strand, within LRK53_RS18350at 43.743 kb on - strand, within LRK53_RS18350at 43.869 kb on + strand, within LRK53_RS18350at 43.869 kb on + strand, within LRK53_RS18350at 43.869 kb on + strand, within LRK53_RS18350at 43.870 kb on - strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.921 kb on + strand, within LRK53_RS18350at 43.922 kb on - strand, within LRK53_RS18350at 43.922 kb on - strand, within LRK53_RS18350at 43.922 kb on - strand, within LRK53_RS18350at 43.922 kb on - strand, within LRK53_RS18350at 43.922 kb on - strand, within LRK53_RS18350at 44.371 kb on + strand, within LRK53_RS18350at 44.371 kb on + strand, within LRK53_RS18350at 44.372 kb on - strand, within LRK53_RS18350at 44.372 kb on - strand, within LRK53_RS18350at 44.503 kb on - strand, within LRK53_RS18350at 44.509 kb on + strand, within LRK53_RS18350at 44.509 kb on + strand, within LRK53_RS18350at 44.509 kb on + strand, within LRK53_RS18350at 44.680 kb on + strand, within LRK53_RS18350at 44.680 kb on + strand, within LRK53_RS18350at 44.680 kb on + strand, within LRK53_RS18350at 44.681 kb on - strand, within LRK53_RS18350at 44.681 kb on - strand, within LRK53_RS18350at 44.906 kb on - strandat 44.994 kb on + strandat 45.045 kb on - strandat 45.045 kb on - strandat 45.045 kb on - strandat 45.060 kb on - strandat 45.060 kb on - strandat 45.367 kb on + strand, within LRK53_RS18355at 45.435 kb on - strand, within LRK53_RS18355at 45.473 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.493 kb on + strand, within LRK53_RS18355at 45.494 kb on - strand, within LRK53_RS18355at 45.494 kb on - strand, within LRK53_RS18355at 45.494 kb on - strand, within LRK53_RS18355at 45.497 kb on + strand, within LRK53_RS18355at 45.497 kb on + strand, within LRK53_RS18355at 45.497 kb on + strand, within LRK53_RS18355at 45.497 kb on + strand, within LRK53_RS18355at 45.497 kb on + strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.498 kb on - strand, within LRK53_RS18355at 45.567 kb on + strand, within LRK53_RS18355at 45.752 kb on + strand, within LRK53_RS18355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
42,323 + LRK53_RS18340 0.83 -1.4
42,323 + LRK53_RS18340 0.83 -0.8
42,323 + LRK53_RS18340 0.83 -0.8
42,323 + LRK53_RS18340 0.83 -0.1
42,324 - LRK53_RS18340 0.83 -0.6
42,324 - LRK53_RS18340 0.83 -1.3
42,324 - LRK53_RS18340 0.83 -1.4
42,324 - LRK53_RS18340 0.83 -0.4
42,431 + -1.4
42,431 + +1.8
42,536 + -0.5
42,617 + LRK53_RS18345 0.15 +0.1
42,617 + LRK53_RS18345 0.15 -0.0
42,617 + LRK53_RS18345 0.15 -1.5
42,617 + LRK53_RS18345 0.15 -0.5
42,617 + LRK53_RS18345 0.15 -1.5
42,617 + LRK53_RS18345 0.15 +0.0
42,617 + LRK53_RS18345 0.15 -1.4
42,617 + LRK53_RS18345 0.15 +0.8
42,617 + LRK53_RS18345 0.15 +0.3
42,617 + LRK53_RS18345 0.15 -0.7
42,618 - LRK53_RS18345 0.15 +1.0
42,618 - LRK53_RS18345 0.15 -0.8
42,618 - LRK53_RS18345 0.15 +0.4
42,618 - LRK53_RS18345 0.15 +1.1
42,618 - LRK53_RS18345 0.15 +0.8
42,618 - LRK53_RS18345 0.15 -1.0
42,618 - LRK53_RS18345 0.15 +1.2
42,630 + LRK53_RS18345 0.17 +0.3
42,630 + LRK53_RS18345 0.17 -1.0
42,631 - LRK53_RS18345 0.17 +0.0
42,720 + LRK53_RS18345 0.31 +0.6
42,793 + LRK53_RS18345 0.42 -1.0
42,794 - LRK53_RS18345 0.42 -1.7
42,836 + LRK53_RS18345 0.48 -0.5
42,836 + LRK53_RS18345 0.48 -0.2
42,836 + LRK53_RS18345 0.48 +0.3
42,836 + LRK53_RS18345 0.48 +0.2
42,836 + LRK53_RS18345 0.48 -2.3
42,836 + LRK53_RS18345 0.48 +1.4
42,836 + LRK53_RS18345 0.48 -0.9
42,836 + LRK53_RS18345 0.48 -1.2
42,837 - LRK53_RS18345 0.49 -1.5
42,837 - LRK53_RS18345 0.49 -0.5
42,837 - LRK53_RS18345 0.49 +0.8
42,837 - LRK53_RS18345 0.49 +1.1
42,837 - LRK53_RS18345 0.49 -2.0
42,837 - LRK53_RS18345 0.49 +1.3
42,837 - LRK53_RS18345 0.49 -0.5
42,837 - LRK53_RS18345 0.49 +1.3
42,837 - LRK53_RS18345 0.49 -0.7
42,844 + LRK53_RS18345 0.50 +1.5
42,844 + LRK53_RS18345 0.50 +0.7
42,844 + LRK53_RS18345 0.50 +0.2
42,845 - LRK53_RS18345 0.50 -0.4
42,845 - LRK53_RS18345 0.50 +0.2
42,845 - LRK53_RS18345 0.50 -1.0
42,848 + LRK53_RS18345 0.50 -1.4
42,848 + LRK53_RS18345 0.50 +0.8
42,848 + LRK53_RS18345 0.50 -1.5
42,997 + LRK53_RS18345 0.73 -1.0
42,997 + LRK53_RS18345 0.73 -0.7
42,997 + LRK53_RS18345 0.73 -2.4
42,997 + LRK53_RS18345 0.73 -0.4
42,997 + LRK53_RS18345 0.73 -0.1
42,998 - LRK53_RS18345 0.73 -0.6
42,998 - LRK53_RS18345 0.73 -0.4
42,998 - LRK53_RS18345 0.73 -0.0
43,001 + LRK53_RS18345 0.74 +0.2
43,001 + LRK53_RS18345 0.74 -0.7
43,001 + LRK53_RS18345 0.74 +0.2
43,001 + LRK53_RS18345 0.74 -1.3
43,002 - LRK53_RS18345 0.74 +0.1
43,002 - LRK53_RS18345 0.74 +0.6
43,002 - LRK53_RS18345 0.74 -1.5
43,002 - LRK53_RS18345 0.74 -0.8
43,131 - +0.9
43,173 - +0.1
43,265 + -0.8
43,265 + +0.8
43,271 + -0.6
43,271 + +1.3
43,271 + +0.2
43,271 + -1.0
43,271 + +0.8
43,271 + -1.2
43,271 + -0.0
43,271 + -1.7
43,271 + -1.5
43,271 + +2.4
43,272 - +2.6
43,272 - -0.8
43,284 + -1.2
43,284 + -0.2
43,469 + LRK53_RS18350 0.12 -1.4
43,469 + LRK53_RS18350 0.12 -0.7
43,470 - LRK53_RS18350 0.12 +1.1
43,470 - LRK53_RS18350 0.12 -0.1
43,470 - LRK53_RS18350 0.12 +0.3
43,470 - LRK53_RS18350 0.12 +0.8
43,561 + LRK53_RS18350 0.17 -0.4
43,561 + LRK53_RS18350 0.17 -0.4
43,562 - LRK53_RS18350 0.17 -1.7
43,562 - LRK53_RS18350 0.17 -1.6
43,562 - LRK53_RS18350 0.17 +3.0
43,562 - LRK53_RS18350 0.17 -2.9
43,562 - LRK53_RS18350 0.17 +2.3
43,562 - LRK53_RS18350 0.17 +0.2
43,562 - LRK53_RS18350 0.17 -0.0
43,562 - LRK53_RS18350 0.17 +0.3
43,597 + LRK53_RS18350 0.20 +1.0
43,598 - LRK53_RS18350 0.20 +1.9
43,598 - LRK53_RS18350 0.20 +0.4
43,709 - LRK53_RS18350 0.26 -1.2
43,742 + LRK53_RS18350 0.28 -0.5
43,742 + LRK53_RS18350 0.28 +0.2
43,743 - LRK53_RS18350 0.28 +2.8
43,743 - LRK53_RS18350 0.28 -0.6
43,743 - LRK53_RS18350 0.28 +1.1
43,869 + LRK53_RS18350 0.36 +1.0
43,869 + LRK53_RS18350 0.36 -0.2
43,869 + LRK53_RS18350 0.36 -1.2
43,870 - LRK53_RS18350 0.36 -0.2
43,921 + LRK53_RS18350 0.39 -0.3
43,921 + LRK53_RS18350 0.39 +0.1
43,921 + LRK53_RS18350 0.39 +0.3
43,921 + LRK53_RS18350 0.39 +1.3
43,921 + LRK53_RS18350 0.39 -0.8
43,921 + LRK53_RS18350 0.39 -1.2
43,921 + LRK53_RS18350 0.39 -0.9
43,921 + LRK53_RS18350 0.39 +0.2
43,921 + LRK53_RS18350 0.39 -1.8
43,922 - LRK53_RS18350 0.39 +2.0
43,922 - LRK53_RS18350 0.39 -0.9
43,922 - LRK53_RS18350 0.39 -1.4
43,922 - LRK53_RS18350 0.39 -0.3
43,922 - LRK53_RS18350 0.39 +1.8
44,371 + LRK53_RS18350 0.67 +0.7
44,371 + LRK53_RS18350 0.67 -1.5
44,372 - LRK53_RS18350 0.67 -1.5
44,372 - LRK53_RS18350 0.67 -1.7
44,503 - LRK53_RS18350 0.75 -1.0
44,509 + LRK53_RS18350 0.76 +1.2
44,509 + LRK53_RS18350 0.76 -1.4
44,509 + LRK53_RS18350 0.76 +0.9
44,680 + LRK53_RS18350 0.86 -0.1
44,680 + LRK53_RS18350 0.86 +1.6
44,680 + LRK53_RS18350 0.86 -2.1
44,681 - LRK53_RS18350 0.86 -0.0
44,681 - LRK53_RS18350 0.86 -0.9
44,906 - +0.3
44,994 + +0.2
45,045 - +1.8
45,045 - -0.5
45,045 - +2.1
45,060 - -0.9
45,060 - +0.2
45,367 + LRK53_RS18355 0.24 +0.6
45,435 - LRK53_RS18355 0.32 -1.4
45,473 + LRK53_RS18355 0.36 -2.2
45,493 + LRK53_RS18355 0.38 -1.5
45,493 + LRK53_RS18355 0.38 -0.9
45,493 + LRK53_RS18355 0.38 -0.3
45,493 + LRK53_RS18355 0.38 -1.8
45,493 + LRK53_RS18355 0.38 -0.0
45,493 + LRK53_RS18355 0.38 -1.0
45,493 + LRK53_RS18355 0.38 -1.0
45,493 + LRK53_RS18355 0.38 -1.2
45,493 + LRK53_RS18355 0.38 -0.5
45,493 + LRK53_RS18355 0.38 -1.5
45,494 - LRK53_RS18355 0.38 +0.4
45,494 - LRK53_RS18355 0.38 +2.2
45,494 - LRK53_RS18355 0.38 -1.0
45,497 + LRK53_RS18355 0.39 -2.2
45,497 + LRK53_RS18355 0.39 -1.0
45,497 + LRK53_RS18355 0.39 -0.3
45,497 + LRK53_RS18355 0.39 +1.8
45,497 + LRK53_RS18355 0.39 -0.1
45,498 - LRK53_RS18355 0.39 +0.0
45,498 - LRK53_RS18355 0.39 +1.7
45,498 - LRK53_RS18355 0.39 +0.4
45,498 - LRK53_RS18355 0.39 -0.8
45,498 - LRK53_RS18355 0.39 +1.6
45,498 - LRK53_RS18355 0.39 +0.1
45,498 - LRK53_RS18355 0.39 -2.4
45,567 + LRK53_RS18355 0.47 +0.8
45,752 + LRK53_RS18355 0.69 +1.6

Or see this region's nucleotide sequence