Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18145 and LRK53_RS18150 are separated by 14 nucleotides LRK53_RS18150 and LRK53_RS18155 overlap by 4 nucleotides LRK53_RS18155 and LRK53_RS18160 are separated by 156 nucleotides LRK53_RS18160 and LRK53_RS18165 are separated by 15 nucleotides
LRK53_RS18145: LRK53_RS18145 - DHHA1 domain-containing protein, at 2,971 to 4,749
_RS18145
LRK53_RS18150: LRK53_RS18150 - hypothetical protein, at 4,764 to 5,423
_RS18150
LRK53_RS18155: LRK53_RS18155 - hypothetical protein, at 5,420 to 6,601
_RS18155
LRK53_RS18160: LRK53_RS18160 - thermonuclease family protein, at 6,758 to 7,480
_RS18160
LRK53_RS18165: LRK53_RS18165 - hypothetical protein, at 7,496 to 8,482
_RS18165
Position (kb) 5
6
7 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4.673 kb on - strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.758 kb on + strand at 4.759 kb on - strand at 4.759 kb on - strand at 4.759 kb on - strand at 4.759 kb on - strand at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.197 kb on + strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.198 kb on - strand, within LRK53_RS18150 at 5.421 kb on + strand at 5.421 kb on + strand at 5.421 kb on + strand at 5.421 kb on + strand at 5.422 kb on - strand at 5.422 kb on - strand at 5.422 kb on - strand at 5.425 kb on + strand at 5.425 kb on + strand at 5.425 kb on + strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.426 kb on - strand at 5.622 kb on - strand, within LRK53_RS18155 at 5.683 kb on - strand, within LRK53_RS18155 at 5.979 kb on + strand, within LRK53_RS18155 at 5.980 kb on - strand, within LRK53_RS18155 at 6.036 kb on - strand, within LRK53_RS18155 at 6.179 kb on + strand, within LRK53_RS18155 at 6.179 kb on + strand, within LRK53_RS18155 at 6.334 kb on - strand, within LRK53_RS18155 at 6.581 kb on + strand at 6.631 kb on + strand at 6.631 kb on + strand at 6.632 kb on - strand at 6.632 kb on - strand at 6.728 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.753 kb on + strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.754 kb on - strand at 6.842 kb on + strand, within LRK53_RS18160 at 6.842 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.202 kb on + strand, within LRK53_RS18160 at 7.203 kb on - strand, within LRK53_RS18160 at 7.225 kb on - strand, within LRK53_RS18160 at 7.251 kb on - strand, within LRK53_RS18160 at 7.388 kb on + strand, within LRK53_RS18160 at 7.388 kb on + strand, within LRK53_RS18160 at 7.389 kb on - strand, within LRK53_RS18160 at 7.389 kb on - strand, within LRK53_RS18160 at 7.497 kb on + strand at 7.497 kb on + strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.499 kb on + strand at 7.500 kb on - strand at 7.500 kb on - strand at 7.500 kb on - strand at 7.500 kb on - strand at 7.587 kb on + strand at 7.587 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 4,673 - +1.2 4,758 + +0.9 4,758 + -0.3 4,758 + +0.1 4,759 - +0.1 4,759 - -0.2 4,759 - -2.5 4,759 - -1.5 5,197 + LRK53_RS18150 0.66 +1.2 5,197 + LRK53_RS18150 0.66 -1.8 5,197 + LRK53_RS18150 0.66 +0.3 5,197 + LRK53_RS18150 0.66 -1.0 5,197 + LRK53_RS18150 0.66 +0.0 5,197 + LRK53_RS18150 0.66 -0.8 5,197 + LRK53_RS18150 0.66 -1.7 5,197 + LRK53_RS18150 0.66 +1.3 5,198 - LRK53_RS18150 0.66 -1.3 5,198 - LRK53_RS18150 0.66 -1.9 5,198 - LRK53_RS18150 0.66 -0.2 5,198 - LRK53_RS18150 0.66 +0.9 5,198 - LRK53_RS18150 0.66 -3.1 5,198 - LRK53_RS18150 0.66 -1.3 5,198 - LRK53_RS18150 0.66 +1.1 5,198 - LRK53_RS18150 0.66 +0.2 5,198 - LRK53_RS18150 0.66 -0.8 5,198 - LRK53_RS18150 0.66 -1.0 5,421 + +1.8 5,421 + +1.6 5,421 + -1.0 5,421 + +0.1 5,422 - -1.7 5,422 - -0.7 5,422 - -0.9 5,425 + -1.7 5,425 + -2.4 5,425 + -1.0 5,426 - -2.4 5,426 - +0.1 5,426 - +0.3 5,426 - -0.9 5,622 - LRK53_RS18155 0.17 -0.0 5,683 - LRK53_RS18155 0.22 -1.7 5,979 + LRK53_RS18155 0.47 -2.5 5,980 - LRK53_RS18155 0.47 -0.0 6,036 - LRK53_RS18155 0.52 +3.0 6,179 + LRK53_RS18155 0.64 -1.0 6,179 + LRK53_RS18155 0.64 -1.4 6,334 - LRK53_RS18155 0.77 -1.8 6,581 + -1.4 6,631 + +0.6 6,631 + +1.1 6,632 - -1.5 6,632 - +0.1 6,728 + -1.8 6,753 + -0.8 6,753 + -1.4 6,753 + +0.2 6,753 + -0.5 6,753 + -0.7 6,753 + +1.3 6,753 + -1.2 6,753 + +0.8 6,753 + -2.4 6,753 + -0.6 6,753 + -1.0 6,753 + +0.7 6,753 + -0.7 6,754 - -0.4 6,754 - -1.4 6,754 - -1.3 6,754 - +1.0 6,754 - +1.0 6,754 - -1.4 6,754 - +0.8 6,754 - +0.8 6,754 - -0.5 6,754 - -0.8 6,754 - -0.1 6,754 - -0.1 6,754 - -0.4 6,754 - -0.8 6,754 - -2.4 6,754 - -1.7 6,754 - -0.5 6,754 - -0.6 6,754 - -1.1 6,842 + LRK53_RS18160 0.12 -0.4 6,842 + LRK53_RS18160 0.12 -0.2 7,202 + LRK53_RS18160 0.61 -0.1 7,202 + LRK53_RS18160 0.61 -1.2 7,202 + LRK53_RS18160 0.61 -0.5 7,202 + LRK53_RS18160 0.61 -0.6 7,202 + LRK53_RS18160 0.61 -1.4 7,202 + LRK53_RS18160 0.61 -0.2 7,203 - LRK53_RS18160 0.62 -0.8 7,225 - LRK53_RS18160 0.65 -0.3 7,251 - LRK53_RS18160 0.68 +0.9 7,388 + LRK53_RS18160 0.87 +1.1 7,388 + LRK53_RS18160 0.87 -1.2 7,389 - LRK53_RS18160 0.87 -1.1 7,389 - LRK53_RS18160 0.87 +0.4 7,497 + -0.9 7,497 + +0.8 7,498 - -1.2 7,498 - -0.1 7,498 - -1.8 7,498 - +0.5 7,498 - +1.6 7,498 - +0.6 7,499 + -1.0 7,500 - -0.0 7,500 - -0.8 7,500 - -0.7 7,500 - -0.8 7,587 + -1.2 7,587 + -0.8
Or see this region's nucleotide sequence