Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17980

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17970 and LRK53_RS17975 are separated by 55 nucleotidesLRK53_RS17975 and LRK53_RS17980 are separated by 85 nucleotidesLRK53_RS17980 and LRK53_RS17985 are separated by 36 nucleotidesLRK53_RS17985 and LRK53_RS17990 are separated by 668 nucleotides LRK53_RS17970: LRK53_RS17970 - ParA family protein, at 3,947,514 to 3,948,146 _RS17970 LRK53_RS17975: LRK53_RS17975 - histidine phosphatase family protein, at 3,948,202 to 3,948,675 _RS17975 LRK53_RS17980: LRK53_RS17980 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein, at 3,948,761 to 3,950,635 _RS17980 LRK53_RS17985: LRK53_RS17985 - hypothetical protein, at 3,950,672 to 3,950,890 _RS17985 LRK53_RS17990: LRK53_RS17990 - energy transducer TonB, at 3,951,559 to 3,952,110 _RS17990 Position (kb) 3948 3949 3950 3951Strain fitness (log2 ratio) -2 -1 0 1 2at 3947.793 kb on + strand, within LRK53_RS17970at 3947.793 kb on + strand, within LRK53_RS17970at 3947.793 kb on + strand, within LRK53_RS17970at 3947.793 kb on + strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3947.794 kb on - strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.033 kb on + strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.034 kb on - strand, within LRK53_RS17970at 3948.072 kb on + strand, within LRK53_RS17970at 3948.073 kb on - strand, within LRK53_RS17970at 3948.449 kb on - strand, within LRK53_RS17975at 3948.749 kb on + strandat 3948.750 kb on - strandat 3948.801 kb on + strandat 3948.801 kb on + strandat 3948.801 kb on + strandat 3948.802 kb on - strandat 3948.802 kb on - strandat 3949.069 kb on - strand, within LRK53_RS17980at 3949.069 kb on - strand, within LRK53_RS17980at 3949.069 kb on - strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.076 kb on + strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.077 kb on - strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.244 kb on + strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.245 kb on - strand, within LRK53_RS17980at 3949.388 kb on + strand, within LRK53_RS17980at 3949.400 kb on + strand, within LRK53_RS17980at 3949.401 kb on - strand, within LRK53_RS17980at 3949.427 kb on + strand, within LRK53_RS17980at 3949.427 kb on + strand, within LRK53_RS17980at 3949.428 kb on - strand, within LRK53_RS17980at 3949.428 kb on - strand, within LRK53_RS17980at 3949.428 kb on - strand, within LRK53_RS17980at 3949.697 kb on + strand, within LRK53_RS17980at 3949.697 kb on + strand, within LRK53_RS17980at 3949.698 kb on - strand, within LRK53_RS17980at 3949.698 kb on - strand, within LRK53_RS17980at 3949.698 kb on - strand, within LRK53_RS17980at 3949.818 kb on - strand, within LRK53_RS17980at 3949.818 kb on - strand, within LRK53_RS17980at 3949.818 kb on - strand, within LRK53_RS17980at 3949.818 kb on - strand, within LRK53_RS17980at 3949.934 kb on + strand, within LRK53_RS17980at 3949.946 kb on + strand, within LRK53_RS17980at 3949.946 kb on + strand, within LRK53_RS17980at 3949.946 kb on + strand, within LRK53_RS17980at 3949.946 kb on + strand, within LRK53_RS17980at 3949.947 kb on - strand, within LRK53_RS17980at 3949.947 kb on - strand, within LRK53_RS17980at 3949.947 kb on - strand, within LRK53_RS17980at 3949.964 kb on + strand, within LRK53_RS17980at 3950.113 kb on - strand, within LRK53_RS17980at 3950.113 kb on - strand, within LRK53_RS17980at 3950.113 kb on - strand, within LRK53_RS17980at 3950.261 kb on + strand, within LRK53_RS17980at 3950.261 kb on + strand, within LRK53_RS17980at 3950.261 kb on + strand, within LRK53_RS17980at 3950.261 kb on + strand, within LRK53_RS17980at 3950.261 kb on + strand, within LRK53_RS17980at 3950.262 kb on - strand, within LRK53_RS17980at 3950.262 kb on - strand, within LRK53_RS17980at 3950.262 kb on - strand, within LRK53_RS17980at 3950.289 kb on - strand, within LRK53_RS17980at 3950.289 kb on - strand, within LRK53_RS17980at 3950.474 kb on + strandat 3950.474 kb on + strandat 3950.475 kb on - strandat 3950.475 kb on - strandat 3950.525 kb on + strandat 3950.525 kb on + strandat 3950.525 kb on + strandat 3950.525 kb on + strandat 3950.534 kb on + strandat 3950.648 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.053 kb on - strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.277 kb on + strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.278 kb on - strandat 3951.484 kb on + strandat 3951.485 kb on - strandat 3951.485 kb on - strandat 3951.561 kb on - strandat 3951.561 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,947,793 + LRK53_RS17970 0.44 +0.0
3,947,793 + LRK53_RS17970 0.44 -0.6
3,947,793 + LRK53_RS17970 0.44 +0.7
3,947,793 + LRK53_RS17970 0.44 +0.4
3,947,794 - LRK53_RS17970 0.44 -1.2
3,947,794 - LRK53_RS17970 0.44 -0.8
3,947,794 - LRK53_RS17970 0.44 +0.7
3,947,794 - LRK53_RS17970 0.44 -1.3
3,947,794 - LRK53_RS17970 0.44 -0.0
3,947,794 - LRK53_RS17970 0.44 +0.1
3,947,794 - LRK53_RS17970 0.44 -1.7
3,947,794 - LRK53_RS17970 0.44 -0.3
3,947,794 - LRK53_RS17970 0.44 +1.1
3,948,033 + LRK53_RS17970 0.82 -1.4
3,948,033 + LRK53_RS17970 0.82 +0.0
3,948,033 + LRK53_RS17970 0.82 +0.1
3,948,033 + LRK53_RS17970 0.82 -1.4
3,948,033 + LRK53_RS17970 0.82 +0.1
3,948,033 + LRK53_RS17970 0.82 +0.6
3,948,033 + LRK53_RS17970 0.82 +0.3
3,948,033 + LRK53_RS17970 0.82 +1.2
3,948,033 + LRK53_RS17970 0.82 -1.1
3,948,033 + LRK53_RS17970 0.82 -1.2
3,948,033 + LRK53_RS17970 0.82 +1.3
3,948,033 + LRK53_RS17970 0.82 -0.4
3,948,033 + LRK53_RS17970 0.82 +0.1
3,948,033 + LRK53_RS17970 0.82 -0.6
3,948,033 + LRK53_RS17970 0.82 -1.2
3,948,033 + LRK53_RS17970 0.82 -1.2
3,948,034 - LRK53_RS17970 0.82 -0.0
3,948,034 - LRK53_RS17970 0.82 -0.2
3,948,034 - LRK53_RS17970 0.82 +2.2
3,948,034 - LRK53_RS17970 0.82 +0.1
3,948,034 - LRK53_RS17970 0.82 +0.6
3,948,034 - LRK53_RS17970 0.82 +0.1
3,948,034 - LRK53_RS17970 0.82 -1.9
3,948,034 - LRK53_RS17970 0.82 +0.2
3,948,034 - LRK53_RS17970 0.82 +0.1
3,948,034 - LRK53_RS17970 0.82 -0.1
3,948,034 - LRK53_RS17970 0.82 +0.2
3,948,034 - LRK53_RS17970 0.82 -0.7
3,948,034 - LRK53_RS17970 0.82 -0.4
3,948,072 + LRK53_RS17970 0.88 -0.9
3,948,073 - LRK53_RS17970 0.88 -0.8
3,948,449 - LRK53_RS17975 0.52 -0.4
3,948,749 + -1.3
3,948,750 - +0.1
3,948,801 + +1.7
3,948,801 + -0.4
3,948,801 + -0.7
3,948,802 - +1.1
3,948,802 - -0.1
3,949,069 - LRK53_RS17980 0.16 -0.3
3,949,069 - LRK53_RS17980 0.16 +1.1
3,949,069 - LRK53_RS17980 0.16 -1.2
3,949,076 + LRK53_RS17980 0.17 -0.8
3,949,076 + LRK53_RS17980 0.17 +1.9
3,949,076 + LRK53_RS17980 0.17 +0.0
3,949,076 + LRK53_RS17980 0.17 -0.7
3,949,076 + LRK53_RS17980 0.17 +0.1
3,949,076 + LRK53_RS17980 0.17 -2.3
3,949,077 - LRK53_RS17980 0.17 -0.9
3,949,077 - LRK53_RS17980 0.17 -0.1
3,949,077 - LRK53_RS17980 0.17 -0.3
3,949,077 - LRK53_RS17980 0.17 -0.4
3,949,077 - LRK53_RS17980 0.17 -0.4
3,949,077 - LRK53_RS17980 0.17 +0.1
3,949,077 - LRK53_RS17980 0.17 +0.0
3,949,244 + LRK53_RS17980 0.26 +0.6
3,949,244 + LRK53_RS17980 0.26 -0.1
3,949,244 + LRK53_RS17980 0.26 -0.3
3,949,244 + LRK53_RS17980 0.26 -0.9
3,949,244 + LRK53_RS17980 0.26 -0.6
3,949,244 + LRK53_RS17980 0.26 +0.4
3,949,245 - LRK53_RS17980 0.26 -0.6
3,949,245 - LRK53_RS17980 0.26 +0.4
3,949,245 - LRK53_RS17980 0.26 -1.0
3,949,245 - LRK53_RS17980 0.26 +0.6
3,949,245 - LRK53_RS17980 0.26 -0.6
3,949,245 - LRK53_RS17980 0.26 -0.4
3,949,388 + LRK53_RS17980 0.33 -0.8
3,949,400 + LRK53_RS17980 0.34 +1.5
3,949,401 - LRK53_RS17980 0.34 -0.3
3,949,427 + LRK53_RS17980 0.36 -0.0
3,949,427 + LRK53_RS17980 0.36 -0.3
3,949,428 - LRK53_RS17980 0.36 -0.7
3,949,428 - LRK53_RS17980 0.36 -2.4
3,949,428 - LRK53_RS17980 0.36 -1.3
3,949,697 + LRK53_RS17980 0.50 -0.3
3,949,697 + LRK53_RS17980 0.50 -1.9
3,949,698 - LRK53_RS17980 0.50 +2.1
3,949,698 - LRK53_RS17980 0.50 +0.1
3,949,698 - LRK53_RS17980 0.50 -0.6
3,949,818 - LRK53_RS17980 0.56 +0.1
3,949,818 - LRK53_RS17980 0.56 +2.5
3,949,818 - LRK53_RS17980 0.56 -0.9
3,949,818 - LRK53_RS17980 0.56 +0.7
3,949,934 + LRK53_RS17980 0.63 +0.6
3,949,946 + LRK53_RS17980 0.63 +1.1
3,949,946 + LRK53_RS17980 0.63 -1.4
3,949,946 + LRK53_RS17980 0.63 +0.4
3,949,946 + LRK53_RS17980 0.63 +0.4
3,949,947 - LRK53_RS17980 0.63 -0.4
3,949,947 - LRK53_RS17980 0.63 -0.1
3,949,947 - LRK53_RS17980 0.63 -0.9
3,949,964 + LRK53_RS17980 0.64 -0.7
3,950,113 - LRK53_RS17980 0.72 -0.1
3,950,113 - LRK53_RS17980 0.72 -1.4
3,950,113 - LRK53_RS17980 0.72 +0.1
3,950,261 + LRK53_RS17980 0.80 +1.3
3,950,261 + LRK53_RS17980 0.80 -1.0
3,950,261 + LRK53_RS17980 0.80 -0.6
3,950,261 + LRK53_RS17980 0.80 -0.4
3,950,261 + LRK53_RS17980 0.80 +1.4
3,950,262 - LRK53_RS17980 0.80 +0.0
3,950,262 - LRK53_RS17980 0.80 -0.9
3,950,262 - LRK53_RS17980 0.80 -2.0
3,950,289 - LRK53_RS17980 0.81 -0.9
3,950,289 - LRK53_RS17980 0.81 +0.8
3,950,474 + -0.1
3,950,474 + -0.1
3,950,475 - +0.3
3,950,475 - -0.4
3,950,525 + +1.1
3,950,525 + +0.4
3,950,525 + +0.3
3,950,525 + -1.9
3,950,534 + +0.1
3,950,648 - +2.0
3,951,053 - +0.4
3,951,053 - -1.9
3,951,053 - -0.8
3,951,053 - -1.0
3,951,053 - -0.4
3,951,053 - -2.3
3,951,053 - -2.0
3,951,053 - +0.5
3,951,053 - -1.6
3,951,277 + +0.9
3,951,277 + -0.9
3,951,277 + +0.7
3,951,277 + -0.6
3,951,277 + -1.1
3,951,277 + +0.2
3,951,277 + -0.4
3,951,277 + -1.0
3,951,278 - -1.3
3,951,278 - -0.6
3,951,278 - +0.6
3,951,278 - -0.3
3,951,484 + -0.1
3,951,485 - -0.2
3,951,485 - -1.1
3,951,561 - +1.0
3,951,561 - +0.1

Or see this region's nucleotide sequence