Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17970 and LRK53_RS17975 are separated by 55 nucleotides LRK53_RS17975 and LRK53_RS17980 are separated by 85 nucleotides LRK53_RS17980 and LRK53_RS17985 are separated by 36 nucleotides LRK53_RS17985 and LRK53_RS17990 are separated by 668 nucleotides
LRK53_RS17970: LRK53_RS17970 - ParA family protein, at 3,947,514 to 3,948,146
_RS17970
LRK53_RS17975: LRK53_RS17975 - histidine phosphatase family protein, at 3,948,202 to 3,948,675
_RS17975
LRK53_RS17980: LRK53_RS17980 - phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein, at 3,948,761 to 3,950,635
_RS17980
LRK53_RS17985: LRK53_RS17985 - hypothetical protein, at 3,950,672 to 3,950,890
_RS17985
LRK53_RS17990: LRK53_RS17990 - energy transducer TonB, at 3,951,559 to 3,952,110
_RS17990
Position (kb)
3948
3949
3950
3951 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3947.793 kb on + strand, within LRK53_RS17970 at 3947.793 kb on + strand, within LRK53_RS17970 at 3947.793 kb on + strand, within LRK53_RS17970 at 3947.793 kb on + strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3947.794 kb on - strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.033 kb on + strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.034 kb on - strand, within LRK53_RS17970 at 3948.072 kb on + strand, within LRK53_RS17970 at 3948.073 kb on - strand, within LRK53_RS17970 at 3948.449 kb on - strand, within LRK53_RS17975 at 3948.749 kb on + strand at 3948.750 kb on - strand at 3948.801 kb on + strand at 3948.801 kb on + strand at 3948.801 kb on + strand at 3948.802 kb on - strand at 3948.802 kb on - strand at 3949.069 kb on - strand, within LRK53_RS17980 at 3949.069 kb on - strand, within LRK53_RS17980 at 3949.069 kb on - strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.076 kb on + strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.077 kb on - strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.244 kb on + strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.245 kb on - strand, within LRK53_RS17980 at 3949.388 kb on + strand, within LRK53_RS17980 at 3949.400 kb on + strand, within LRK53_RS17980 at 3949.401 kb on - strand, within LRK53_RS17980 at 3949.427 kb on + strand, within LRK53_RS17980 at 3949.427 kb on + strand, within LRK53_RS17980 at 3949.428 kb on - strand, within LRK53_RS17980 at 3949.428 kb on - strand, within LRK53_RS17980 at 3949.428 kb on - strand, within LRK53_RS17980 at 3949.697 kb on + strand, within LRK53_RS17980 at 3949.697 kb on + strand, within LRK53_RS17980 at 3949.698 kb on - strand, within LRK53_RS17980 at 3949.698 kb on - strand, within LRK53_RS17980 at 3949.698 kb on - strand, within LRK53_RS17980 at 3949.818 kb on - strand, within LRK53_RS17980 at 3949.818 kb on - strand, within LRK53_RS17980 at 3949.818 kb on - strand, within LRK53_RS17980 at 3949.818 kb on - strand, within LRK53_RS17980 at 3949.934 kb on + strand, within LRK53_RS17980 at 3949.946 kb on + strand, within LRK53_RS17980 at 3949.946 kb on + strand, within LRK53_RS17980 at 3949.946 kb on + strand, within LRK53_RS17980 at 3949.946 kb on + strand, within LRK53_RS17980 at 3949.947 kb on - strand, within LRK53_RS17980 at 3949.947 kb on - strand, within LRK53_RS17980 at 3949.947 kb on - strand, within LRK53_RS17980 at 3949.964 kb on + strand, within LRK53_RS17980 at 3950.113 kb on - strand, within LRK53_RS17980 at 3950.113 kb on - strand, within LRK53_RS17980 at 3950.113 kb on - strand, within LRK53_RS17980 at 3950.261 kb on + strand, within LRK53_RS17980 at 3950.261 kb on + strand, within LRK53_RS17980 at 3950.261 kb on + strand, within LRK53_RS17980 at 3950.261 kb on + strand, within LRK53_RS17980 at 3950.261 kb on + strand, within LRK53_RS17980 at 3950.262 kb on - strand, within LRK53_RS17980 at 3950.262 kb on - strand, within LRK53_RS17980 at 3950.262 kb on - strand, within LRK53_RS17980 at 3950.289 kb on - strand, within LRK53_RS17980 at 3950.289 kb on - strand, within LRK53_RS17980 at 3950.474 kb on + strand at 3950.474 kb on + strand at 3950.475 kb on - strand at 3950.475 kb on - strand at 3950.525 kb on + strand at 3950.525 kb on + strand at 3950.525 kb on + strand at 3950.525 kb on + strand at 3950.534 kb on + strand at 3950.648 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.053 kb on - strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.277 kb on + strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.278 kb on - strand at 3951.484 kb on + strand at 3951.485 kb on - strand at 3951.485 kb on - strand at 3951.561 kb on - strand at 3951.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,947,793 + LRK53_RS17970 0.44 +0.0 3,947,793 + LRK53_RS17970 0.44 -0.6 3,947,793 + LRK53_RS17970 0.44 +0.7 3,947,793 + LRK53_RS17970 0.44 +0.4 3,947,794 - LRK53_RS17970 0.44 -1.2 3,947,794 - LRK53_RS17970 0.44 -0.8 3,947,794 - LRK53_RS17970 0.44 +0.7 3,947,794 - LRK53_RS17970 0.44 -1.3 3,947,794 - LRK53_RS17970 0.44 -0.0 3,947,794 - LRK53_RS17970 0.44 +0.1 3,947,794 - LRK53_RS17970 0.44 -1.7 3,947,794 - LRK53_RS17970 0.44 -0.3 3,947,794 - LRK53_RS17970 0.44 +1.1 3,948,033 + LRK53_RS17970 0.82 -1.4 3,948,033 + LRK53_RS17970 0.82 +0.0 3,948,033 + LRK53_RS17970 0.82 +0.1 3,948,033 + LRK53_RS17970 0.82 -1.4 3,948,033 + LRK53_RS17970 0.82 +0.1 3,948,033 + LRK53_RS17970 0.82 +0.6 3,948,033 + LRK53_RS17970 0.82 +0.3 3,948,033 + LRK53_RS17970 0.82 +1.2 3,948,033 + LRK53_RS17970 0.82 -1.1 3,948,033 + LRK53_RS17970 0.82 -1.2 3,948,033 + LRK53_RS17970 0.82 +1.3 3,948,033 + LRK53_RS17970 0.82 -0.4 3,948,033 + LRK53_RS17970 0.82 +0.1 3,948,033 + LRK53_RS17970 0.82 -0.6 3,948,033 + LRK53_RS17970 0.82 -1.2 3,948,033 + LRK53_RS17970 0.82 -1.2 3,948,034 - LRK53_RS17970 0.82 -0.0 3,948,034 - LRK53_RS17970 0.82 -0.2 3,948,034 - LRK53_RS17970 0.82 +2.2 3,948,034 - LRK53_RS17970 0.82 +0.1 3,948,034 - LRK53_RS17970 0.82 +0.6 3,948,034 - LRK53_RS17970 0.82 +0.1 3,948,034 - LRK53_RS17970 0.82 -1.9 3,948,034 - LRK53_RS17970 0.82 +0.2 3,948,034 - LRK53_RS17970 0.82 +0.1 3,948,034 - LRK53_RS17970 0.82 -0.1 3,948,034 - LRK53_RS17970 0.82 +0.2 3,948,034 - LRK53_RS17970 0.82 -0.7 3,948,034 - LRK53_RS17970 0.82 -0.4 3,948,072 + LRK53_RS17970 0.88 -0.9 3,948,073 - LRK53_RS17970 0.88 -0.8 3,948,449 - LRK53_RS17975 0.52 -0.4 3,948,749 + -1.3 3,948,750 - +0.1 3,948,801 + +1.7 3,948,801 + -0.4 3,948,801 + -0.7 3,948,802 - +1.1 3,948,802 - -0.1 3,949,069 - LRK53_RS17980 0.16 -0.3 3,949,069 - LRK53_RS17980 0.16 +1.1 3,949,069 - LRK53_RS17980 0.16 -1.2 3,949,076 + LRK53_RS17980 0.17 -0.8 3,949,076 + LRK53_RS17980 0.17 +1.9 3,949,076 + LRK53_RS17980 0.17 +0.0 3,949,076 + LRK53_RS17980 0.17 -0.7 3,949,076 + LRK53_RS17980 0.17 +0.1 3,949,076 + LRK53_RS17980 0.17 -2.3 3,949,077 - LRK53_RS17980 0.17 -0.9 3,949,077 - LRK53_RS17980 0.17 -0.1 3,949,077 - LRK53_RS17980 0.17 -0.3 3,949,077 - LRK53_RS17980 0.17 -0.4 3,949,077 - LRK53_RS17980 0.17 -0.4 3,949,077 - LRK53_RS17980 0.17 +0.1 3,949,077 - LRK53_RS17980 0.17 +0.0 3,949,244 + LRK53_RS17980 0.26 +0.6 3,949,244 + LRK53_RS17980 0.26 -0.1 3,949,244 + LRK53_RS17980 0.26 -0.3 3,949,244 + LRK53_RS17980 0.26 -0.9 3,949,244 + LRK53_RS17980 0.26 -0.6 3,949,244 + LRK53_RS17980 0.26 +0.4 3,949,245 - LRK53_RS17980 0.26 -0.6 3,949,245 - LRK53_RS17980 0.26 +0.4 3,949,245 - LRK53_RS17980 0.26 -1.0 3,949,245 - LRK53_RS17980 0.26 +0.6 3,949,245 - LRK53_RS17980 0.26 -0.6 3,949,245 - LRK53_RS17980 0.26 -0.4 3,949,388 + LRK53_RS17980 0.33 -0.8 3,949,400 + LRK53_RS17980 0.34 +1.5 3,949,401 - LRK53_RS17980 0.34 -0.3 3,949,427 + LRK53_RS17980 0.36 -0.0 3,949,427 + LRK53_RS17980 0.36 -0.3 3,949,428 - LRK53_RS17980 0.36 -0.7 3,949,428 - LRK53_RS17980 0.36 -2.4 3,949,428 - LRK53_RS17980 0.36 -1.3 3,949,697 + LRK53_RS17980 0.50 -0.3 3,949,697 + LRK53_RS17980 0.50 -1.9 3,949,698 - LRK53_RS17980 0.50 +2.1 3,949,698 - LRK53_RS17980 0.50 +0.1 3,949,698 - LRK53_RS17980 0.50 -0.6 3,949,818 - LRK53_RS17980 0.56 +0.1 3,949,818 - LRK53_RS17980 0.56 +2.5 3,949,818 - LRK53_RS17980 0.56 -0.9 3,949,818 - LRK53_RS17980 0.56 +0.7 3,949,934 + LRK53_RS17980 0.63 +0.6 3,949,946 + LRK53_RS17980 0.63 +1.1 3,949,946 + LRK53_RS17980 0.63 -1.4 3,949,946 + LRK53_RS17980 0.63 +0.4 3,949,946 + LRK53_RS17980 0.63 +0.4 3,949,947 - LRK53_RS17980 0.63 -0.4 3,949,947 - LRK53_RS17980 0.63 -0.1 3,949,947 - LRK53_RS17980 0.63 -0.9 3,949,964 + LRK53_RS17980 0.64 -0.7 3,950,113 - LRK53_RS17980 0.72 -0.1 3,950,113 - LRK53_RS17980 0.72 -1.4 3,950,113 - LRK53_RS17980 0.72 +0.1 3,950,261 + LRK53_RS17980 0.80 +1.3 3,950,261 + LRK53_RS17980 0.80 -1.0 3,950,261 + LRK53_RS17980 0.80 -0.6 3,950,261 + LRK53_RS17980 0.80 -0.4 3,950,261 + LRK53_RS17980 0.80 +1.4 3,950,262 - LRK53_RS17980 0.80 +0.0 3,950,262 - LRK53_RS17980 0.80 -0.9 3,950,262 - LRK53_RS17980 0.80 -2.0 3,950,289 - LRK53_RS17980 0.81 -0.9 3,950,289 - LRK53_RS17980 0.81 +0.8 3,950,474 + -0.1 3,950,474 + -0.1 3,950,475 - +0.3 3,950,475 - -0.4 3,950,525 + +1.1 3,950,525 + +0.4 3,950,525 + +0.3 3,950,525 + -1.9 3,950,534 + +0.1 3,950,648 - +2.0 3,951,053 - +0.4 3,951,053 - -1.9 3,951,053 - -0.8 3,951,053 - -1.0 3,951,053 - -0.4 3,951,053 - -2.3 3,951,053 - -2.0 3,951,053 - +0.5 3,951,053 - -1.6 3,951,277 + +0.9 3,951,277 + -0.9 3,951,277 + +0.7 3,951,277 + -0.6 3,951,277 + -1.1 3,951,277 + +0.2 3,951,277 + -0.4 3,951,277 + -1.0 3,951,278 - -1.3 3,951,278 - -0.6 3,951,278 - +0.6 3,951,278 - -0.3 3,951,484 + -0.1 3,951,485 - -0.2 3,951,485 - -1.1 3,951,561 - +1.0 3,951,561 - +0.1
Or see this region's nucleotide sequence