Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17910

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17905 and LRK53_RS17910 are separated by 95 nucleotidesLRK53_RS17910 and LRK53_RS17915 are separated by 508 nucleotides LRK53_RS17905: LRK53_RS17905 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC, at 3,933,574 to 3,934,779 _RS17905 LRK53_RS17910: LRK53_RS17910 - DNA repair protein RadC, at 3,934,875 to 3,935,546 _RS17910 LRK53_RS17915: LRK53_RS17915 - arginine--tRNA ligase, at 3,936,055 to 3,937,743 _RS17915 Position (kb) 3934 3935 3936Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.782 kb on - strandat 3934.806 kb on - strandat 3934.806 kb on - strandat 3934.806 kb on - strandat 3934.806 kb on - strandat 3934.810 kb on + strandat 3934.810 kb on + strandat 3934.811 kb on - strandat 3934.811 kb on - strandat 3934.811 kb on - strandat 3934.811 kb on - strandat 3934.811 kb on - strandat 3934.811 kb on - strandat 3934.815 kb on + strandat 3935.205 kb on + strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.206 kb on - strand, within LRK53_RS17910at 3935.235 kb on + strand, within LRK53_RS17910at 3935.235 kb on + strand, within LRK53_RS17910at 3935.235 kb on + strand, within LRK53_RS17910at 3935.235 kb on + strand, within LRK53_RS17910at 3935.236 kb on - strand, within LRK53_RS17910at 3935.236 kb on - strand, within LRK53_RS17910at 3935.236 kb on - strand, within LRK53_RS17910at 3935.256 kb on + strand, within LRK53_RS17910at 3935.256 kb on + strand, within LRK53_RS17910at 3935.256 kb on + strand, within LRK53_RS17910at 3935.256 kb on + strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.257 kb on - strand, within LRK53_RS17910at 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.744 kb on + strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.745 kb on - strandat 3935.746 kb on + strandat 3935.747 kb on - strandat 3935.747 kb on - strandat 3935.781 kb on - strandat 3935.907 kb on + strandat 3935.907 kb on + strandat 3935.908 kb on - strandat 3935.908 kb on - strandat 3935.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,934,782 - -0.7
3,934,782 - +0.0
3,934,782 - -1.0
3,934,782 - -1.0
3,934,782 - -0.2
3,934,782 - -0.9
3,934,782 - -1.8
3,934,782 - -1.7
3,934,782 - -0.5
3,934,806 - -0.7
3,934,806 - -1.1
3,934,806 - -0.9
3,934,806 - -1.3
3,934,810 + -1.3
3,934,810 + -0.5
3,934,811 - +0.7
3,934,811 - -1.3
3,934,811 - -1.7
3,934,811 - -2.0
3,934,811 - +1.6
3,934,811 - +4.1
3,934,815 + -0.4
3,935,205 + LRK53_RS17910 0.49 -1.7
3,935,206 - LRK53_RS17910 0.49 -2.0
3,935,206 - LRK53_RS17910 0.49 -0.9
3,935,206 - LRK53_RS17910 0.49 -1.0
3,935,206 - LRK53_RS17910 0.49 -0.2
3,935,206 - LRK53_RS17910 0.49 +0.8
3,935,206 - LRK53_RS17910 0.49 -1.1
3,935,235 + LRK53_RS17910 0.54 -1.3
3,935,235 + LRK53_RS17910 0.54 -2.1
3,935,235 + LRK53_RS17910 0.54 -1.3
3,935,235 + LRK53_RS17910 0.54 -2.3
3,935,236 - LRK53_RS17910 0.54 -0.2
3,935,236 - LRK53_RS17910 0.54 -1.7
3,935,236 - LRK53_RS17910 0.54 +0.4
3,935,256 + LRK53_RS17910 0.57 -0.1
3,935,256 + LRK53_RS17910 0.57 +1.9
3,935,256 + LRK53_RS17910 0.57 -2.9
3,935,256 + LRK53_RS17910 0.57 +0.6
3,935,257 - LRK53_RS17910 0.57 +1.0
3,935,257 - LRK53_RS17910 0.57 -1.9
3,935,257 - LRK53_RS17910 0.57 -0.7
3,935,257 - LRK53_RS17910 0.57 -0.7
3,935,257 - LRK53_RS17910 0.57 -1.8
3,935,257 - LRK53_RS17910 0.57 -0.6
3,935,744 + -2.1
3,935,744 + -0.7
3,935,744 + -0.5
3,935,744 + +0.3
3,935,744 + -2.5
3,935,744 + -0.3
3,935,744 + -0.9
3,935,744 + -0.3
3,935,744 + -1.4
3,935,744 + -1.0
3,935,745 - -0.4
3,935,745 - +0.1
3,935,745 - +1.6
3,935,745 - +2.6
3,935,745 - -0.4
3,935,745 - -0.4
3,935,745 - +0.7
3,935,745 - -1.4
3,935,745 - +0.3
3,935,745 - +0.9
3,935,745 - -1.4
3,935,745 - +0.1
3,935,745 - -0.7
3,935,745 - +1.3
3,935,745 - -1.2
3,935,745 - -0.2
3,935,745 - -0.5
3,935,746 + -1.3
3,935,747 - +2.1
3,935,747 - -1.3
3,935,781 - -0.2
3,935,907 + -0.6
3,935,907 + -1.4
3,935,908 - -0.1
3,935,908 - +0.4
3,935,908 - -0.7

Or see this region's nucleotide sequence