Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17455 and LRK53_RS17460 are separated by 8 nucleotides LRK53_RS17460 and LRK53_RS17465 are separated by 7 nucleotides LRK53_RS17465 and LRK53_RS17470 are separated by 59 nucleotides
LRK53_RS17455: LRK53_RS17455 - cardiolipin synthase, at 3,831,365 to 3,832,759
_RS17455
LRK53_RS17460: LRK53_RS17460 - alpha/beta hydrolase-fold protein, at 3,832,768 to 3,833,550
_RS17460
LRK53_RS17465: LRK53_RS17465 - hypothetical protein, at 3,833,558 to 3,833,992
_RS17465
LRK53_RS17470: LRK53_RS17470 - nicotinamidase, at 3,834,052 to 3,834,702
_RS17470
Position (kb)
3832
3833
3834 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3831.899 kb on + strand, within LRK53_RS17455 at 3831.899 kb on + strand, within LRK53_RS17455 at 3831.899 kb on + strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3831.900 kb on - strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.055 kb on + strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.056 kb on - strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.325 kb on + strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.326 kb on - strand, within LRK53_RS17455 at 3832.454 kb on + strand, within LRK53_RS17455 at 3832.454 kb on + strand, within LRK53_RS17455 at 3832.454 kb on + strand, within LRK53_RS17455 at 3832.455 kb on - strand, within LRK53_RS17455 at 3832.455 kb on - strand, within LRK53_RS17455 at 3832.706 kb on + strand at 3832.706 kb on + strand at 3832.706 kb on + strand at 3832.706 kb on + strand at 3832.707 kb on - strand at 3832.757 kb on + strand at 3832.757 kb on + strand at 3832.758 kb on - strand at 3832.758 kb on - strand at 3832.758 kb on - strand at 3832.758 kb on - strand at 3832.876 kb on + strand, within LRK53_RS17460 at 3832.876 kb on + strand, within LRK53_RS17460 at 3832.877 kb on - strand, within LRK53_RS17460 at 3833.183 kb on - strand, within LRK53_RS17460 at 3833.183 kb on - strand, within LRK53_RS17460 at 3833.317 kb on + strand, within LRK53_RS17460 at 3833.494 kb on + strand at 3833.495 kb on - strand at 3833.495 kb on - strand at 3833.559 kb on + strand at 3833.560 kb on - strand at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.616 kb on + strand, within LRK53_RS17465 at 3833.617 kb on - strand, within LRK53_RS17465 at 3833.617 kb on - strand, within LRK53_RS17465 at 3833.731 kb on - strand, within LRK53_RS17465 at 3833.731 kb on - strand, within LRK53_RS17465 at 3833.731 kb on - strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.739 kb on + strand, within LRK53_RS17465 at 3833.740 kb on - strand, within LRK53_RS17465 at 3833.740 kb on - strand, within LRK53_RS17465 at 3833.740 kb on - strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.937 kb on + strand, within LRK53_RS17465 at 3833.938 kb on - strand, within LRK53_RS17465 at 3833.962 kb on + strand at 3833.962 kb on + strand at 3833.963 kb on - strand at 3833.963 kb on - strand at 3833.963 kb on - strand at 3833.983 kb on + strand at 3833.983 kb on + strand at 3833.984 kb on - strand at 3833.984 kb on - strand at 3833.984 kb on - strand at 3834.017 kb on + strand at 3834.289 kb on + strand, within LRK53_RS17470 at 3834.289 kb on + strand, within LRK53_RS17470 at 3834.290 kb on - strand, within LRK53_RS17470 at 3834.290 kb on - strand, within LRK53_RS17470 at 3834.421 kb on + strand, within LRK53_RS17470 at 3834.421 kb on + strand, within LRK53_RS17470 at 3834.421 kb on + strand, within LRK53_RS17470 at 3834.422 kb on - strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.539 kb on + strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470 at 3834.540 kb on - strand, within LRK53_RS17470
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,831,899 + LRK53_RS17455 0.38 -0.4 3,831,899 + LRK53_RS17455 0.38 -1.3 3,831,899 + LRK53_RS17455 0.38 -1.3 3,831,900 - LRK53_RS17455 0.38 -0.1 3,831,900 - LRK53_RS17455 0.38 -0.6 3,831,900 - LRK53_RS17455 0.38 -0.4 3,831,900 - LRK53_RS17455 0.38 -0.4 3,831,900 - LRK53_RS17455 0.38 +0.3 3,831,900 - LRK53_RS17455 0.38 +0.3 3,831,900 - LRK53_RS17455 0.38 -0.4 3,831,900 - LRK53_RS17455 0.38 -0.7 3,832,055 + LRK53_RS17455 0.49 -1.4 3,832,055 + LRK53_RS17455 0.49 -0.7 3,832,055 + LRK53_RS17455 0.49 -1.2 3,832,055 + LRK53_RS17455 0.49 -0.4 3,832,055 + LRK53_RS17455 0.49 +0.9 3,832,055 + LRK53_RS17455 0.49 +0.3 3,832,056 - LRK53_RS17455 0.50 -1.8 3,832,056 - LRK53_RS17455 0.50 +0.7 3,832,056 - LRK53_RS17455 0.50 -2.8 3,832,056 - LRK53_RS17455 0.50 -1.4 3,832,056 - LRK53_RS17455 0.50 -1.4 3,832,056 - LRK53_RS17455 0.50 +0.3 3,832,325 + LRK53_RS17455 0.69 +0.9 3,832,325 + LRK53_RS17455 0.69 -0.3 3,832,325 + LRK53_RS17455 0.69 -0.3 3,832,325 + LRK53_RS17455 0.69 +0.3 3,832,325 + LRK53_RS17455 0.69 -0.9 3,832,325 + LRK53_RS17455 0.69 -0.4 3,832,325 + LRK53_RS17455 0.69 -1.2 3,832,325 + LRK53_RS17455 0.69 -0.1 3,832,325 + LRK53_RS17455 0.69 -1.0 3,832,326 - LRK53_RS17455 0.69 -1.4 3,832,326 - LRK53_RS17455 0.69 +2.1 3,832,326 - LRK53_RS17455 0.69 +0.3 3,832,326 - LRK53_RS17455 0.69 -1.9 3,832,326 - LRK53_RS17455 0.69 -0.9 3,832,326 - LRK53_RS17455 0.69 -1.1 3,832,326 - LRK53_RS17455 0.69 +0.3 3,832,326 - LRK53_RS17455 0.69 -0.0 3,832,326 - LRK53_RS17455 0.69 -0.6 3,832,454 + LRK53_RS17455 0.78 -0.6 3,832,454 + LRK53_RS17455 0.78 -0.1 3,832,454 + LRK53_RS17455 0.78 +0.7 3,832,455 - LRK53_RS17455 0.78 -0.5 3,832,455 - LRK53_RS17455 0.78 +0.1 3,832,706 + -1.5 3,832,706 + +0.0 3,832,706 + -1.9 3,832,706 + -1.1 3,832,707 - -0.1 3,832,757 + -0.4 3,832,757 + -0.7 3,832,758 - +1.1 3,832,758 - -0.7 3,832,758 - -0.3 3,832,758 - +0.9 3,832,876 + LRK53_RS17460 0.14 -0.6 3,832,876 + LRK53_RS17460 0.14 +0.7 3,832,877 - LRK53_RS17460 0.14 +2.7 3,833,183 - LRK53_RS17460 0.53 -1.7 3,833,183 - LRK53_RS17460 0.53 -1.8 3,833,317 + LRK53_RS17460 0.70 -0.1 3,833,494 + +2.7 3,833,495 - +0.7 3,833,495 - -0.2 3,833,559 + -1.1 3,833,560 - -0.8 3,833,616 + LRK53_RS17465 0.13 -0.9 3,833,616 + LRK53_RS17465 0.13 -0.3 3,833,616 + LRK53_RS17465 0.13 +1.0 3,833,616 + LRK53_RS17465 0.13 +3.0 3,833,616 + LRK53_RS17465 0.13 -0.9 3,833,616 + LRK53_RS17465 0.13 -0.8 3,833,616 + LRK53_RS17465 0.13 -0.1 3,833,616 + LRK53_RS17465 0.13 +1.9 3,833,616 + LRK53_RS17465 0.13 -0.2 3,833,617 - LRK53_RS17465 0.14 +0.9 3,833,617 - LRK53_RS17465 0.14 +1.7 3,833,731 - LRK53_RS17465 0.40 -0.6 3,833,731 - LRK53_RS17465 0.40 -0.4 3,833,731 - LRK53_RS17465 0.40 -1.0 3,833,739 + LRK53_RS17465 0.42 -0.6 3,833,739 + LRK53_RS17465 0.42 -1.7 3,833,739 + LRK53_RS17465 0.42 -1.9 3,833,739 + LRK53_RS17465 0.42 -0.3 3,833,739 + LRK53_RS17465 0.42 +1.7 3,833,739 + LRK53_RS17465 0.42 -1.6 3,833,739 + LRK53_RS17465 0.42 -0.9 3,833,740 - LRK53_RS17465 0.42 +0.0 3,833,740 - LRK53_RS17465 0.42 +1.4 3,833,740 - LRK53_RS17465 0.42 -0.2 3,833,937 + LRK53_RS17465 0.87 -2.3 3,833,937 + LRK53_RS17465 0.87 -0.0 3,833,937 + LRK53_RS17465 0.87 +2.7 3,833,937 + LRK53_RS17465 0.87 +0.4 3,833,937 + LRK53_RS17465 0.87 -1.4 3,833,937 + LRK53_RS17465 0.87 +0.3 3,833,937 + LRK53_RS17465 0.87 -0.7 3,833,937 + LRK53_RS17465 0.87 -0.7 3,833,937 + LRK53_RS17465 0.87 -0.1 3,833,938 - LRK53_RS17465 0.87 +0.3 3,833,962 + -0.7 3,833,962 + +2.3 3,833,963 - -0.3 3,833,963 - -0.9 3,833,963 - -3.6 3,833,983 + +0.1 3,833,983 + +1.0 3,833,984 - +0.9 3,833,984 - +0.0 3,833,984 - +0.2 3,834,017 + -0.7 3,834,289 + LRK53_RS17470 0.36 -1.3 3,834,289 + LRK53_RS17470 0.36 -0.1 3,834,290 - LRK53_RS17470 0.37 +1.1 3,834,290 - LRK53_RS17470 0.37 -0.4 3,834,421 + LRK53_RS17470 0.57 -1.2 3,834,421 + LRK53_RS17470 0.57 -0.7 3,834,421 + LRK53_RS17470 0.57 -0.3 3,834,422 - LRK53_RS17470 0.57 +0.2 3,834,539 + LRK53_RS17470 0.75 -0.4 3,834,539 + LRK53_RS17470 0.75 -0.1 3,834,539 + LRK53_RS17470 0.75 -0.1 3,834,539 + LRK53_RS17470 0.75 -0.4 3,834,539 + LRK53_RS17470 0.75 -1.4 3,834,539 + LRK53_RS17470 0.75 -0.1 3,834,539 + LRK53_RS17470 0.75 +0.3 3,834,539 + LRK53_RS17470 0.75 -1.1 3,834,539 + LRK53_RS17470 0.75 -0.3 3,834,539 + LRK53_RS17470 0.75 -1.1 3,834,539 + LRK53_RS17470 0.75 -0.5 3,834,539 + LRK53_RS17470 0.75 -0.9 3,834,539 + LRK53_RS17470 0.75 -0.9 3,834,539 + LRK53_RS17470 0.75 +0.1 3,834,539 + LRK53_RS17470 0.75 -2.2 3,834,539 + LRK53_RS17470 0.75 +0.2 3,834,539 + LRK53_RS17470 0.75 -0.6 3,834,539 + LRK53_RS17470 0.75 +1.1 3,834,539 + LRK53_RS17470 0.75 -0.1 3,834,539 + LRK53_RS17470 0.75 -0.1 3,834,539 + LRK53_RS17470 0.75 +0.7 3,834,539 + LRK53_RS17470 0.75 -1.9 3,834,539 + LRK53_RS17470 0.75 -0.4 3,834,539 + LRK53_RS17470 0.75 -1.3 3,834,539 + LRK53_RS17470 0.75 -1.5 3,834,539 + LRK53_RS17470 0.75 -0.9 3,834,539 + LRK53_RS17470 0.75 -1.3 3,834,539 + LRK53_RS17470 0.75 -0.3 3,834,540 - LRK53_RS17470 0.75 -0.1 3,834,540 - LRK53_RS17470 0.75 +0.1 3,834,540 - LRK53_RS17470 0.75 +0.7 3,834,540 - LRK53_RS17470 0.75 +1.4 3,834,540 - LRK53_RS17470 0.75 +2.1 3,834,540 - LRK53_RS17470 0.75 -2.6 3,834,540 - LRK53_RS17470 0.75 -0.7 3,834,540 - LRK53_RS17470 0.75 -1.0 3,834,540 - LRK53_RS17470 0.75 +0.6 3,834,540 - LRK53_RS17470 0.75 +0.4 3,834,540 - LRK53_RS17470 0.75 +0.2 3,834,540 - LRK53_RS17470 0.75 -0.1 3,834,540 - LRK53_RS17470 0.75 +0.1 3,834,540 - LRK53_RS17470 0.75 -0.1 3,834,540 - LRK53_RS17470 0.75 -1.7 3,834,540 - LRK53_RS17470 0.75 +0.9 3,834,540 - LRK53_RS17470 0.75 -0.4 3,834,540 - LRK53_RS17470 0.75 -1.5
Or see this region's nucleotide sequence