Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17460

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17455 and LRK53_RS17460 are separated by 8 nucleotidesLRK53_RS17460 and LRK53_RS17465 are separated by 7 nucleotidesLRK53_RS17465 and LRK53_RS17470 are separated by 59 nucleotides LRK53_RS17455: LRK53_RS17455 - cardiolipin synthase, at 3,831,365 to 3,832,759 _RS17455 LRK53_RS17460: LRK53_RS17460 - alpha/beta hydrolase-fold protein, at 3,832,768 to 3,833,550 _RS17460 LRK53_RS17465: LRK53_RS17465 - hypothetical protein, at 3,833,558 to 3,833,992 _RS17465 LRK53_RS17470: LRK53_RS17470 - nicotinamidase, at 3,834,052 to 3,834,702 _RS17470 Position (kb) 3832 3833 3834Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3831.899 kb on + strand, within LRK53_RS17455at 3831.899 kb on + strand, within LRK53_RS17455at 3831.899 kb on + strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3831.900 kb on - strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.055 kb on + strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.056 kb on - strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.325 kb on + strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.326 kb on - strand, within LRK53_RS17455at 3832.454 kb on + strand, within LRK53_RS17455at 3832.454 kb on + strand, within LRK53_RS17455at 3832.454 kb on + strand, within LRK53_RS17455at 3832.455 kb on - strand, within LRK53_RS17455at 3832.455 kb on - strand, within LRK53_RS17455at 3832.706 kb on + strandat 3832.706 kb on + strandat 3832.706 kb on + strandat 3832.706 kb on + strandat 3832.707 kb on - strandat 3832.757 kb on + strandat 3832.757 kb on + strandat 3832.758 kb on - strandat 3832.758 kb on - strandat 3832.758 kb on - strandat 3832.758 kb on - strandat 3832.876 kb on + strand, within LRK53_RS17460at 3832.876 kb on + strand, within LRK53_RS17460at 3832.877 kb on - strand, within LRK53_RS17460at 3833.183 kb on - strand, within LRK53_RS17460at 3833.183 kb on - strand, within LRK53_RS17460at 3833.317 kb on + strand, within LRK53_RS17460at 3833.494 kb on + strandat 3833.495 kb on - strandat 3833.495 kb on - strandat 3833.559 kb on + strandat 3833.560 kb on - strandat 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.616 kb on + strand, within LRK53_RS17465at 3833.617 kb on - strand, within LRK53_RS17465at 3833.617 kb on - strand, within LRK53_RS17465at 3833.731 kb on - strand, within LRK53_RS17465at 3833.731 kb on - strand, within LRK53_RS17465at 3833.731 kb on - strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.739 kb on + strand, within LRK53_RS17465at 3833.740 kb on - strand, within LRK53_RS17465at 3833.740 kb on - strand, within LRK53_RS17465at 3833.740 kb on - strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.937 kb on + strand, within LRK53_RS17465at 3833.938 kb on - strand, within LRK53_RS17465at 3833.962 kb on + strandat 3833.962 kb on + strandat 3833.963 kb on - strandat 3833.963 kb on - strandat 3833.963 kb on - strandat 3833.983 kb on + strandat 3833.983 kb on + strandat 3833.984 kb on - strandat 3833.984 kb on - strandat 3833.984 kb on - strandat 3834.017 kb on + strandat 3834.289 kb on + strand, within LRK53_RS17470at 3834.289 kb on + strand, within LRK53_RS17470at 3834.290 kb on - strand, within LRK53_RS17470at 3834.290 kb on - strand, within LRK53_RS17470at 3834.421 kb on + strand, within LRK53_RS17470at 3834.421 kb on + strand, within LRK53_RS17470at 3834.421 kb on + strand, within LRK53_RS17470at 3834.422 kb on - strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.539 kb on + strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470at 3834.540 kb on - strand, within LRK53_RS17470

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,831,899 + LRK53_RS17455 0.38 -0.4
3,831,899 + LRK53_RS17455 0.38 -1.3
3,831,899 + LRK53_RS17455 0.38 -1.3
3,831,900 - LRK53_RS17455 0.38 -0.1
3,831,900 - LRK53_RS17455 0.38 -0.6
3,831,900 - LRK53_RS17455 0.38 -0.4
3,831,900 - LRK53_RS17455 0.38 -0.4
3,831,900 - LRK53_RS17455 0.38 +0.3
3,831,900 - LRK53_RS17455 0.38 +0.3
3,831,900 - LRK53_RS17455 0.38 -0.4
3,831,900 - LRK53_RS17455 0.38 -0.7
3,832,055 + LRK53_RS17455 0.49 -1.4
3,832,055 + LRK53_RS17455 0.49 -0.7
3,832,055 + LRK53_RS17455 0.49 -1.2
3,832,055 + LRK53_RS17455 0.49 -0.4
3,832,055 + LRK53_RS17455 0.49 +0.9
3,832,055 + LRK53_RS17455 0.49 +0.3
3,832,056 - LRK53_RS17455 0.50 -1.8
3,832,056 - LRK53_RS17455 0.50 +0.7
3,832,056 - LRK53_RS17455 0.50 -2.8
3,832,056 - LRK53_RS17455 0.50 -1.4
3,832,056 - LRK53_RS17455 0.50 -1.4
3,832,056 - LRK53_RS17455 0.50 +0.3
3,832,325 + LRK53_RS17455 0.69 +0.9
3,832,325 + LRK53_RS17455 0.69 -0.3
3,832,325 + LRK53_RS17455 0.69 -0.3
3,832,325 + LRK53_RS17455 0.69 +0.3
3,832,325 + LRK53_RS17455 0.69 -0.9
3,832,325 + LRK53_RS17455 0.69 -0.4
3,832,325 + LRK53_RS17455 0.69 -1.2
3,832,325 + LRK53_RS17455 0.69 -0.1
3,832,325 + LRK53_RS17455 0.69 -1.0
3,832,326 - LRK53_RS17455 0.69 -1.4
3,832,326 - LRK53_RS17455 0.69 +2.1
3,832,326 - LRK53_RS17455 0.69 +0.3
3,832,326 - LRK53_RS17455 0.69 -1.9
3,832,326 - LRK53_RS17455 0.69 -0.9
3,832,326 - LRK53_RS17455 0.69 -1.1
3,832,326 - LRK53_RS17455 0.69 +0.3
3,832,326 - LRK53_RS17455 0.69 -0.0
3,832,326 - LRK53_RS17455 0.69 -0.6
3,832,454 + LRK53_RS17455 0.78 -0.6
3,832,454 + LRK53_RS17455 0.78 -0.1
3,832,454 + LRK53_RS17455 0.78 +0.7
3,832,455 - LRK53_RS17455 0.78 -0.5
3,832,455 - LRK53_RS17455 0.78 +0.1
3,832,706 + -1.5
3,832,706 + +0.0
3,832,706 + -1.9
3,832,706 + -1.1
3,832,707 - -0.1
3,832,757 + -0.4
3,832,757 + -0.7
3,832,758 - +1.1
3,832,758 - -0.7
3,832,758 - -0.3
3,832,758 - +0.9
3,832,876 + LRK53_RS17460 0.14 -0.6
3,832,876 + LRK53_RS17460 0.14 +0.7
3,832,877 - LRK53_RS17460 0.14 +2.7
3,833,183 - LRK53_RS17460 0.53 -1.7
3,833,183 - LRK53_RS17460 0.53 -1.8
3,833,317 + LRK53_RS17460 0.70 -0.1
3,833,494 + +2.7
3,833,495 - +0.7
3,833,495 - -0.2
3,833,559 + -1.1
3,833,560 - -0.8
3,833,616 + LRK53_RS17465 0.13 -0.9
3,833,616 + LRK53_RS17465 0.13 -0.3
3,833,616 + LRK53_RS17465 0.13 +1.0
3,833,616 + LRK53_RS17465 0.13 +3.0
3,833,616 + LRK53_RS17465 0.13 -0.9
3,833,616 + LRK53_RS17465 0.13 -0.8
3,833,616 + LRK53_RS17465 0.13 -0.1
3,833,616 + LRK53_RS17465 0.13 +1.9
3,833,616 + LRK53_RS17465 0.13 -0.2
3,833,617 - LRK53_RS17465 0.14 +0.9
3,833,617 - LRK53_RS17465 0.14 +1.7
3,833,731 - LRK53_RS17465 0.40 -0.6
3,833,731 - LRK53_RS17465 0.40 -0.4
3,833,731 - LRK53_RS17465 0.40 -1.0
3,833,739 + LRK53_RS17465 0.42 -0.6
3,833,739 + LRK53_RS17465 0.42 -1.7
3,833,739 + LRK53_RS17465 0.42 -1.9
3,833,739 + LRK53_RS17465 0.42 -0.3
3,833,739 + LRK53_RS17465 0.42 +1.7
3,833,739 + LRK53_RS17465 0.42 -1.6
3,833,739 + LRK53_RS17465 0.42 -0.9
3,833,740 - LRK53_RS17465 0.42 +0.0
3,833,740 - LRK53_RS17465 0.42 +1.4
3,833,740 - LRK53_RS17465 0.42 -0.2
3,833,937 + LRK53_RS17465 0.87 -2.3
3,833,937 + LRK53_RS17465 0.87 -0.0
3,833,937 + LRK53_RS17465 0.87 +2.7
3,833,937 + LRK53_RS17465 0.87 +0.4
3,833,937 + LRK53_RS17465 0.87 -1.4
3,833,937 + LRK53_RS17465 0.87 +0.3
3,833,937 + LRK53_RS17465 0.87 -0.7
3,833,937 + LRK53_RS17465 0.87 -0.7
3,833,937 + LRK53_RS17465 0.87 -0.1
3,833,938 - LRK53_RS17465 0.87 +0.3
3,833,962 + -0.7
3,833,962 + +2.3
3,833,963 - -0.3
3,833,963 - -0.9
3,833,963 - -3.6
3,833,983 + +0.1
3,833,983 + +1.0
3,833,984 - +0.9
3,833,984 - +0.0
3,833,984 - +0.2
3,834,017 + -0.7
3,834,289 + LRK53_RS17470 0.36 -1.3
3,834,289 + LRK53_RS17470 0.36 -0.1
3,834,290 - LRK53_RS17470 0.37 +1.1
3,834,290 - LRK53_RS17470 0.37 -0.4
3,834,421 + LRK53_RS17470 0.57 -1.2
3,834,421 + LRK53_RS17470 0.57 -0.7
3,834,421 + LRK53_RS17470 0.57 -0.3
3,834,422 - LRK53_RS17470 0.57 +0.2
3,834,539 + LRK53_RS17470 0.75 -0.4
3,834,539 + LRK53_RS17470 0.75 -0.1
3,834,539 + LRK53_RS17470 0.75 -0.1
3,834,539 + LRK53_RS17470 0.75 -0.4
3,834,539 + LRK53_RS17470 0.75 -1.4
3,834,539 + LRK53_RS17470 0.75 -0.1
3,834,539 + LRK53_RS17470 0.75 +0.3
3,834,539 + LRK53_RS17470 0.75 -1.1
3,834,539 + LRK53_RS17470 0.75 -0.3
3,834,539 + LRK53_RS17470 0.75 -1.1
3,834,539 + LRK53_RS17470 0.75 -0.5
3,834,539 + LRK53_RS17470 0.75 -0.9
3,834,539 + LRK53_RS17470 0.75 -0.9
3,834,539 + LRK53_RS17470 0.75 +0.1
3,834,539 + LRK53_RS17470 0.75 -2.2
3,834,539 + LRK53_RS17470 0.75 +0.2
3,834,539 + LRK53_RS17470 0.75 -0.6
3,834,539 + LRK53_RS17470 0.75 +1.1
3,834,539 + LRK53_RS17470 0.75 -0.1
3,834,539 + LRK53_RS17470 0.75 -0.1
3,834,539 + LRK53_RS17470 0.75 +0.7
3,834,539 + LRK53_RS17470 0.75 -1.9
3,834,539 + LRK53_RS17470 0.75 -0.4
3,834,539 + LRK53_RS17470 0.75 -1.3
3,834,539 + LRK53_RS17470 0.75 -1.5
3,834,539 + LRK53_RS17470 0.75 -0.9
3,834,539 + LRK53_RS17470 0.75 -1.3
3,834,539 + LRK53_RS17470 0.75 -0.3
3,834,540 - LRK53_RS17470 0.75 -0.1
3,834,540 - LRK53_RS17470 0.75 +0.1
3,834,540 - LRK53_RS17470 0.75 +0.7
3,834,540 - LRK53_RS17470 0.75 +1.4
3,834,540 - LRK53_RS17470 0.75 +2.1
3,834,540 - LRK53_RS17470 0.75 -2.6
3,834,540 - LRK53_RS17470 0.75 -0.7
3,834,540 - LRK53_RS17470 0.75 -1.0
3,834,540 - LRK53_RS17470 0.75 +0.6
3,834,540 - LRK53_RS17470 0.75 +0.4
3,834,540 - LRK53_RS17470 0.75 +0.2
3,834,540 - LRK53_RS17470 0.75 -0.1
3,834,540 - LRK53_RS17470 0.75 +0.1
3,834,540 - LRK53_RS17470 0.75 -0.1
3,834,540 - LRK53_RS17470 0.75 -1.7
3,834,540 - LRK53_RS17470 0.75 +0.9
3,834,540 - LRK53_RS17470 0.75 -0.4
3,834,540 - LRK53_RS17470 0.75 -1.5

Or see this region's nucleotide sequence