Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS17000 and LRK53_RS17005 overlap by 4 nucleotides LRK53_RS17005 and LRK53_RS17010 are separated by 169 nucleotides
LRK53_RS17000: LRK53_RS17000 - dicarboxylate/amino acid:cation symporter, at 3,731,908 to 3,733,155
_RS17000
LRK53_RS17005: LRK53_RS17005 - hypothetical protein, at 3,733,152 to 3,733,913
_RS17005
LRK53_RS17010: LRK53_RS17010 - MurR/RpiR family transcriptional regulator, at 3,734,083 to 3,734,940
_RS17010
Position (kb)
3733
3734 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3732.188 kb on + strand, within LRK53_RS17000 at 3732.189 kb on - strand, within LRK53_RS17000 at 3732.189 kb on - strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.221 kb on + strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.222 kb on - strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.461 kb on + strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.462 kb on - strand, within LRK53_RS17000 at 3732.485 kb on + strand, within LRK53_RS17000 at 3732.485 kb on + strand, within LRK53_RS17000 at 3732.485 kb on + strand, within LRK53_RS17000 at 3732.485 kb on + strand, within LRK53_RS17000 at 3732.486 kb on - strand, within LRK53_RS17000 at 3732.486 kb on - strand, within LRK53_RS17000 at 3732.486 kb on - strand, within LRK53_RS17000 at 3732.486 kb on - strand, within LRK53_RS17000 at 3732.486 kb on - strand, within LRK53_RS17000 at 3732.853 kb on + strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3732.854 kb on - strand, within LRK53_RS17000 at 3733.099 kb on + strand at 3733.099 kb on + strand at 3733.207 kb on + strand at 3733.208 kb on - strand at 3733.504 kb on + strand, within LRK53_RS17005 at 3733.504 kb on + strand, within LRK53_RS17005 at 3733.505 kb on - strand, within LRK53_RS17005 at 3733.505 kb on - strand, within LRK53_RS17005 at 3733.505 kb on - strand, within LRK53_RS17005 at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.907 kb on + strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3733.908 kb on - strand at 3734.204 kb on + strand, within LRK53_RS17010 at 3734.205 kb on - strand, within LRK53_RS17010 at 3734.205 kb on - strand, within LRK53_RS17010 at 3734.205 kb on - strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.222 kb on + strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.223 kb on - strand, within LRK53_RS17010 at 3734.333 kb on + strand, within LRK53_RS17010 at 3734.334 kb on - strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.738 kb on + strand, within LRK53_RS17010 at 3734.739 kb on - strand, within LRK53_RS17010 at 3734.739 kb on - strand, within LRK53_RS17010 at 3734.739 kb on - strand, within LRK53_RS17010 at 3734.739 kb on - strand, within LRK53_RS17010 at 3734.837 kb on + strand, within LRK53_RS17010 at 3734.838 kb on - strand, within LRK53_RS17010 at 3734.838 kb on - strand, within LRK53_RS17010 at 3734.838 kb on - strand, within LRK53_RS17010
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,732,188 + LRK53_RS17000 0.22 -0.5 3,732,189 - LRK53_RS17000 0.23 -0.9 3,732,189 - LRK53_RS17000 0.23 -0.5 3,732,221 + LRK53_RS17000 0.25 -0.1 3,732,221 + LRK53_RS17000 0.25 +2.2 3,732,221 + LRK53_RS17000 0.25 -1.4 3,732,221 + LRK53_RS17000 0.25 +0.0 3,732,221 + LRK53_RS17000 0.25 -0.6 3,732,221 + LRK53_RS17000 0.25 +0.9 3,732,221 + LRK53_RS17000 0.25 +0.1 3,732,221 + LRK53_RS17000 0.25 -0.2 3,732,221 + LRK53_RS17000 0.25 +0.2 3,732,221 + LRK53_RS17000 0.25 +0.4 3,732,221 + LRK53_RS17000 0.25 -1.3 3,732,221 + LRK53_RS17000 0.25 -0.3 3,732,221 + LRK53_RS17000 0.25 +0.2 3,732,221 + LRK53_RS17000 0.25 -0.1 3,732,222 - LRK53_RS17000 0.25 +0.2 3,732,222 - LRK53_RS17000 0.25 +1.2 3,732,222 - LRK53_RS17000 0.25 -1.8 3,732,222 - LRK53_RS17000 0.25 -0.8 3,732,222 - LRK53_RS17000 0.25 -0.1 3,732,222 - LRK53_RS17000 0.25 -0.3 3,732,222 - LRK53_RS17000 0.25 +0.1 3,732,222 - LRK53_RS17000 0.25 +2.6 3,732,222 - LRK53_RS17000 0.25 -2.2 3,732,222 - LRK53_RS17000 0.25 -0.1 3,732,222 - LRK53_RS17000 0.25 +0.4 3,732,461 + LRK53_RS17000 0.44 +0.6 3,732,461 + LRK53_RS17000 0.44 +0.4 3,732,461 + LRK53_RS17000 0.44 -0.1 3,732,461 + LRK53_RS17000 0.44 +0.2 3,732,461 + LRK53_RS17000 0.44 +0.5 3,732,461 + LRK53_RS17000 0.44 -0.7 3,732,461 + LRK53_RS17000 0.44 -1.8 3,732,461 + LRK53_RS17000 0.44 -1.3 3,732,461 + LRK53_RS17000 0.44 -0.3 3,732,461 + LRK53_RS17000 0.44 -0.4 3,732,461 + LRK53_RS17000 0.44 +0.1 3,732,461 + LRK53_RS17000 0.44 -0.1 3,732,461 + LRK53_RS17000 0.44 -0.6 3,732,461 + LRK53_RS17000 0.44 +1.5 3,732,461 + LRK53_RS17000 0.44 +2.0 3,732,461 + LRK53_RS17000 0.44 -0.5 3,732,462 - LRK53_RS17000 0.44 -1.6 3,732,462 - LRK53_RS17000 0.44 -0.6 3,732,462 - LRK53_RS17000 0.44 +1.3 3,732,462 - LRK53_RS17000 0.44 -1.1 3,732,462 - LRK53_RS17000 0.44 +0.7 3,732,462 - LRK53_RS17000 0.44 -1.4 3,732,462 - LRK53_RS17000 0.44 -0.3 3,732,462 - LRK53_RS17000 0.44 -0.4 3,732,462 - LRK53_RS17000 0.44 -1.3 3,732,462 - LRK53_RS17000 0.44 +0.5 3,732,462 - LRK53_RS17000 0.44 -0.2 3,732,462 - LRK53_RS17000 0.44 -0.6 3,732,485 + LRK53_RS17000 0.46 -0.3 3,732,485 + LRK53_RS17000 0.46 +0.7 3,732,485 + LRK53_RS17000 0.46 +0.8 3,732,485 + LRK53_RS17000 0.46 +0.7 3,732,486 - LRK53_RS17000 0.46 +0.4 3,732,486 - LRK53_RS17000 0.46 -1.8 3,732,486 - LRK53_RS17000 0.46 +1.0 3,732,486 - LRK53_RS17000 0.46 +0.6 3,732,486 - LRK53_RS17000 0.46 -2.2 3,732,853 + LRK53_RS17000 0.76 +0.8 3,732,854 - LRK53_RS17000 0.76 +1.5 3,732,854 - LRK53_RS17000 0.76 -2.4 3,732,854 - LRK53_RS17000 0.76 -2.0 3,732,854 - LRK53_RS17000 0.76 -2.2 3,732,854 - LRK53_RS17000 0.76 +0.9 3,732,854 - LRK53_RS17000 0.76 -1.0 3,733,099 + +1.0 3,733,099 + +0.2 3,733,207 + -0.8 3,733,208 - -1.2 3,733,504 + LRK53_RS17005 0.46 -1.2 3,733,504 + LRK53_RS17005 0.46 +0.5 3,733,505 - LRK53_RS17005 0.46 -1.0 3,733,505 - LRK53_RS17005 0.46 -0.9 3,733,505 - LRK53_RS17005 0.46 -0.6 3,733,907 + +0.3 3,733,907 + +1.3 3,733,907 + -0.0 3,733,907 + -1.0 3,733,907 + -0.3 3,733,907 + +0.2 3,733,907 + +0.7 3,733,907 + -0.3 3,733,907 + -0.9 3,733,907 + -0.3 3,733,907 + -0.5 3,733,908 - -3.0 3,733,908 - -0.4 3,733,908 - +0.0 3,733,908 - +2.0 3,733,908 - +1.2 3,733,908 - -1.0 3,733,908 - +0.8 3,733,908 - -1.1 3,733,908 - -0.0 3,733,908 - +1.7 3,733,908 - +0.5 3,733,908 - -0.6 3,733,908 - -2.3 3,733,908 - +1.0 3,733,908 - -0.9 3,733,908 - +2.5 3,734,204 + LRK53_RS17010 0.14 -1.9 3,734,205 - LRK53_RS17010 0.14 -0.1 3,734,205 - LRK53_RS17010 0.14 +0.4 3,734,205 - LRK53_RS17010 0.14 +0.7 3,734,222 + LRK53_RS17010 0.16 -1.1 3,734,222 + LRK53_RS17010 0.16 -1.3 3,734,222 + LRK53_RS17010 0.16 -1.6 3,734,222 + LRK53_RS17010 0.16 -1.9 3,734,222 + LRK53_RS17010 0.16 +0.7 3,734,222 + LRK53_RS17010 0.16 +1.1 3,734,222 + LRK53_RS17010 0.16 -0.6 3,734,222 + LRK53_RS17010 0.16 -0.7 3,734,222 + LRK53_RS17010 0.16 -2.4 3,734,222 + LRK53_RS17010 0.16 -1.1 3,734,223 - LRK53_RS17010 0.16 -3.1 3,734,223 - LRK53_RS17010 0.16 +1.0 3,734,223 - LRK53_RS17010 0.16 -0.2 3,734,223 - LRK53_RS17010 0.16 +0.9 3,734,223 - LRK53_RS17010 0.16 +2.4 3,734,223 - LRK53_RS17010 0.16 -1.1 3,734,223 - LRK53_RS17010 0.16 -2.0 3,734,223 - LRK53_RS17010 0.16 -1.2 3,734,223 - LRK53_RS17010 0.16 -0.2 3,734,223 - LRK53_RS17010 0.16 -0.4 3,734,223 - LRK53_RS17010 0.16 -0.6 3,734,223 - LRK53_RS17010 0.16 +0.1 3,734,223 - LRK53_RS17010 0.16 -1.5 3,734,223 - LRK53_RS17010 0.16 -0.0 3,734,333 + LRK53_RS17010 0.29 -0.0 3,734,334 - LRK53_RS17010 0.29 +0.9 3,734,738 + LRK53_RS17010 0.76 +0.2 3,734,738 + LRK53_RS17010 0.76 +1.0 3,734,738 + LRK53_RS17010 0.76 -0.5 3,734,738 + LRK53_RS17010 0.76 +0.2 3,734,738 + LRK53_RS17010 0.76 +0.2 3,734,738 + LRK53_RS17010 0.76 +0.9 3,734,738 + LRK53_RS17010 0.76 -1.6 3,734,738 + LRK53_RS17010 0.76 +1.3 3,734,739 - LRK53_RS17010 0.76 +0.1 3,734,739 - LRK53_RS17010 0.76 -0.3 3,734,739 - LRK53_RS17010 0.76 +0.6 3,734,739 - LRK53_RS17010 0.76 +0.0 3,734,837 + LRK53_RS17010 0.88 -0.9 3,734,838 - LRK53_RS17010 0.88 +0.4 3,734,838 - LRK53_RS17010 0.88 +1.7 3,734,838 - LRK53_RS17010 0.88 -0.0
Or see this region's nucleotide sequence