Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS17005

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS17000 and LRK53_RS17005 overlap by 4 nucleotidesLRK53_RS17005 and LRK53_RS17010 are separated by 169 nucleotides LRK53_RS17000: LRK53_RS17000 - dicarboxylate/amino acid:cation symporter, at 3,731,908 to 3,733,155 _RS17000 LRK53_RS17005: LRK53_RS17005 - hypothetical protein, at 3,733,152 to 3,733,913 _RS17005 LRK53_RS17010: LRK53_RS17010 - MurR/RpiR family transcriptional regulator, at 3,734,083 to 3,734,940 _RS17010 Position (kb) 3733 3734Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3732.188 kb on + strand, within LRK53_RS17000at 3732.189 kb on - strand, within LRK53_RS17000at 3732.189 kb on - strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.221 kb on + strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.222 kb on - strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.461 kb on + strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.462 kb on - strand, within LRK53_RS17000at 3732.485 kb on + strand, within LRK53_RS17000at 3732.485 kb on + strand, within LRK53_RS17000at 3732.485 kb on + strand, within LRK53_RS17000at 3732.485 kb on + strand, within LRK53_RS17000at 3732.486 kb on - strand, within LRK53_RS17000at 3732.486 kb on - strand, within LRK53_RS17000at 3732.486 kb on - strand, within LRK53_RS17000at 3732.486 kb on - strand, within LRK53_RS17000at 3732.486 kb on - strand, within LRK53_RS17000at 3732.853 kb on + strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3732.854 kb on - strand, within LRK53_RS17000at 3733.099 kb on + strandat 3733.099 kb on + strandat 3733.207 kb on + strandat 3733.208 kb on - strandat 3733.504 kb on + strand, within LRK53_RS17005at 3733.504 kb on + strand, within LRK53_RS17005at 3733.505 kb on - strand, within LRK53_RS17005at 3733.505 kb on - strand, within LRK53_RS17005at 3733.505 kb on - strand, within LRK53_RS17005at 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.907 kb on + strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3733.908 kb on - strandat 3734.204 kb on + strand, within LRK53_RS17010at 3734.205 kb on - strand, within LRK53_RS17010at 3734.205 kb on - strand, within LRK53_RS17010at 3734.205 kb on - strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.222 kb on + strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.223 kb on - strand, within LRK53_RS17010at 3734.333 kb on + strand, within LRK53_RS17010at 3734.334 kb on - strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.738 kb on + strand, within LRK53_RS17010at 3734.739 kb on - strand, within LRK53_RS17010at 3734.739 kb on - strand, within LRK53_RS17010at 3734.739 kb on - strand, within LRK53_RS17010at 3734.739 kb on - strand, within LRK53_RS17010at 3734.837 kb on + strand, within LRK53_RS17010at 3734.838 kb on - strand, within LRK53_RS17010at 3734.838 kb on - strand, within LRK53_RS17010at 3734.838 kb on - strand, within LRK53_RS17010

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,732,188 + LRK53_RS17000 0.22 -0.5
3,732,189 - LRK53_RS17000 0.23 -0.9
3,732,189 - LRK53_RS17000 0.23 -0.5
3,732,221 + LRK53_RS17000 0.25 -0.1
3,732,221 + LRK53_RS17000 0.25 +2.2
3,732,221 + LRK53_RS17000 0.25 -1.4
3,732,221 + LRK53_RS17000 0.25 +0.0
3,732,221 + LRK53_RS17000 0.25 -0.6
3,732,221 + LRK53_RS17000 0.25 +0.9
3,732,221 + LRK53_RS17000 0.25 +0.1
3,732,221 + LRK53_RS17000 0.25 -0.2
3,732,221 + LRK53_RS17000 0.25 +0.2
3,732,221 + LRK53_RS17000 0.25 +0.4
3,732,221 + LRK53_RS17000 0.25 -1.3
3,732,221 + LRK53_RS17000 0.25 -0.3
3,732,221 + LRK53_RS17000 0.25 +0.2
3,732,221 + LRK53_RS17000 0.25 -0.1
3,732,222 - LRK53_RS17000 0.25 +0.2
3,732,222 - LRK53_RS17000 0.25 +1.2
3,732,222 - LRK53_RS17000 0.25 -1.8
3,732,222 - LRK53_RS17000 0.25 -0.8
3,732,222 - LRK53_RS17000 0.25 -0.1
3,732,222 - LRK53_RS17000 0.25 -0.3
3,732,222 - LRK53_RS17000 0.25 +0.1
3,732,222 - LRK53_RS17000 0.25 +2.6
3,732,222 - LRK53_RS17000 0.25 -2.2
3,732,222 - LRK53_RS17000 0.25 -0.1
3,732,222 - LRK53_RS17000 0.25 +0.4
3,732,461 + LRK53_RS17000 0.44 +0.6
3,732,461 + LRK53_RS17000 0.44 +0.4
3,732,461 + LRK53_RS17000 0.44 -0.1
3,732,461 + LRK53_RS17000 0.44 +0.2
3,732,461 + LRK53_RS17000 0.44 +0.5
3,732,461 + LRK53_RS17000 0.44 -0.7
3,732,461 + LRK53_RS17000 0.44 -1.8
3,732,461 + LRK53_RS17000 0.44 -1.3
3,732,461 + LRK53_RS17000 0.44 -0.3
3,732,461 + LRK53_RS17000 0.44 -0.4
3,732,461 + LRK53_RS17000 0.44 +0.1
3,732,461 + LRK53_RS17000 0.44 -0.1
3,732,461 + LRK53_RS17000 0.44 -0.6
3,732,461 + LRK53_RS17000 0.44 +1.5
3,732,461 + LRK53_RS17000 0.44 +2.0
3,732,461 + LRK53_RS17000 0.44 -0.5
3,732,462 - LRK53_RS17000 0.44 -1.6
3,732,462 - LRK53_RS17000 0.44 -0.6
3,732,462 - LRK53_RS17000 0.44 +1.3
3,732,462 - LRK53_RS17000 0.44 -1.1
3,732,462 - LRK53_RS17000 0.44 +0.7
3,732,462 - LRK53_RS17000 0.44 -1.4
3,732,462 - LRK53_RS17000 0.44 -0.3
3,732,462 - LRK53_RS17000 0.44 -0.4
3,732,462 - LRK53_RS17000 0.44 -1.3
3,732,462 - LRK53_RS17000 0.44 +0.5
3,732,462 - LRK53_RS17000 0.44 -0.2
3,732,462 - LRK53_RS17000 0.44 -0.6
3,732,485 + LRK53_RS17000 0.46 -0.3
3,732,485 + LRK53_RS17000 0.46 +0.7
3,732,485 + LRK53_RS17000 0.46 +0.8
3,732,485 + LRK53_RS17000 0.46 +0.7
3,732,486 - LRK53_RS17000 0.46 +0.4
3,732,486 - LRK53_RS17000 0.46 -1.8
3,732,486 - LRK53_RS17000 0.46 +1.0
3,732,486 - LRK53_RS17000 0.46 +0.6
3,732,486 - LRK53_RS17000 0.46 -2.2
3,732,853 + LRK53_RS17000 0.76 +0.8
3,732,854 - LRK53_RS17000 0.76 +1.5
3,732,854 - LRK53_RS17000 0.76 -2.4
3,732,854 - LRK53_RS17000 0.76 -2.0
3,732,854 - LRK53_RS17000 0.76 -2.2
3,732,854 - LRK53_RS17000 0.76 +0.9
3,732,854 - LRK53_RS17000 0.76 -1.0
3,733,099 + +1.0
3,733,099 + +0.2
3,733,207 + -0.8
3,733,208 - -1.2
3,733,504 + LRK53_RS17005 0.46 -1.2
3,733,504 + LRK53_RS17005 0.46 +0.5
3,733,505 - LRK53_RS17005 0.46 -1.0
3,733,505 - LRK53_RS17005 0.46 -0.9
3,733,505 - LRK53_RS17005 0.46 -0.6
3,733,907 + +0.3
3,733,907 + +1.3
3,733,907 + -0.0
3,733,907 + -1.0
3,733,907 + -0.3
3,733,907 + +0.2
3,733,907 + +0.7
3,733,907 + -0.3
3,733,907 + -0.9
3,733,907 + -0.3
3,733,907 + -0.5
3,733,908 - -3.0
3,733,908 - -0.4
3,733,908 - +0.0
3,733,908 - +2.0
3,733,908 - +1.2
3,733,908 - -1.0
3,733,908 - +0.8
3,733,908 - -1.1
3,733,908 - -0.0
3,733,908 - +1.7
3,733,908 - +0.5
3,733,908 - -0.6
3,733,908 - -2.3
3,733,908 - +1.0
3,733,908 - -0.9
3,733,908 - +2.5
3,734,204 + LRK53_RS17010 0.14 -1.9
3,734,205 - LRK53_RS17010 0.14 -0.1
3,734,205 - LRK53_RS17010 0.14 +0.4
3,734,205 - LRK53_RS17010 0.14 +0.7
3,734,222 + LRK53_RS17010 0.16 -1.1
3,734,222 + LRK53_RS17010 0.16 -1.3
3,734,222 + LRK53_RS17010 0.16 -1.6
3,734,222 + LRK53_RS17010 0.16 -1.9
3,734,222 + LRK53_RS17010 0.16 +0.7
3,734,222 + LRK53_RS17010 0.16 +1.1
3,734,222 + LRK53_RS17010 0.16 -0.6
3,734,222 + LRK53_RS17010 0.16 -0.7
3,734,222 + LRK53_RS17010 0.16 -2.4
3,734,222 + LRK53_RS17010 0.16 -1.1
3,734,223 - LRK53_RS17010 0.16 -3.1
3,734,223 - LRK53_RS17010 0.16 +1.0
3,734,223 - LRK53_RS17010 0.16 -0.2
3,734,223 - LRK53_RS17010 0.16 +0.9
3,734,223 - LRK53_RS17010 0.16 +2.4
3,734,223 - LRK53_RS17010 0.16 -1.1
3,734,223 - LRK53_RS17010 0.16 -2.0
3,734,223 - LRK53_RS17010 0.16 -1.2
3,734,223 - LRK53_RS17010 0.16 -0.2
3,734,223 - LRK53_RS17010 0.16 -0.4
3,734,223 - LRK53_RS17010 0.16 -0.6
3,734,223 - LRK53_RS17010 0.16 +0.1
3,734,223 - LRK53_RS17010 0.16 -1.5
3,734,223 - LRK53_RS17010 0.16 -0.0
3,734,333 + LRK53_RS17010 0.29 -0.0
3,734,334 - LRK53_RS17010 0.29 +0.9
3,734,738 + LRK53_RS17010 0.76 +0.2
3,734,738 + LRK53_RS17010 0.76 +1.0
3,734,738 + LRK53_RS17010 0.76 -0.5
3,734,738 + LRK53_RS17010 0.76 +0.2
3,734,738 + LRK53_RS17010 0.76 +0.2
3,734,738 + LRK53_RS17010 0.76 +0.9
3,734,738 + LRK53_RS17010 0.76 -1.6
3,734,738 + LRK53_RS17010 0.76 +1.3
3,734,739 - LRK53_RS17010 0.76 +0.1
3,734,739 - LRK53_RS17010 0.76 -0.3
3,734,739 - LRK53_RS17010 0.76 +0.6
3,734,739 - LRK53_RS17010 0.76 +0.0
3,734,837 + LRK53_RS17010 0.88 -0.9
3,734,838 - LRK53_RS17010 0.88 +0.4
3,734,838 - LRK53_RS17010 0.88 +1.7
3,734,838 - LRK53_RS17010 0.88 -0.0

Or see this region's nucleotide sequence