Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16985

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16975 and LRK53_RS16980 are separated by 3 nucleotidesLRK53_RS16980 and LRK53_RS16985 are separated by 5 nucleotidesLRK53_RS16985 and LRK53_RS16990 are separated by 63 nucleotides LRK53_RS16975: LRK53_RS16975 - sulfite exporter TauE/SafE family protein, at 3,727,861 to 3,728,604 _RS16975 LRK53_RS16980: LRK53_RS16980 - haloacid dehalogenase-like hydrolase, at 3,728,608 to 3,729,282 _RS16980 LRK53_RS16985: LRK53_RS16985 - indole-3-glycerol phosphate synthase TrpC, at 3,729,288 to 3,730,082 _RS16985 LRK53_RS16990: LRK53_RS16990 - anthranilate phosphoribosyltransferase, at 3,730,146 to 3,731,204 _RS16990 Position (kb) 3729 3730 3731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3728.472 kb on + strand, within LRK53_RS16975at 3728.473 kb on - strand, within LRK53_RS16975at 3728.603 kb on - strandat 3728.609 kb on + strandat 3728.768 kb on + strand, within LRK53_RS16980at 3728.769 kb on - strand, within LRK53_RS16980at 3728.769 kb on - strand, within LRK53_RS16980at 3728.769 kb on - strand, within LRK53_RS16980at 3728.769 kb on - strand, within LRK53_RS16980at 3729.086 kb on + strand, within LRK53_RS16980at 3729.086 kb on + strand, within LRK53_RS16980at 3729.086 kb on + strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.087 kb on - strand, within LRK53_RS16980at 3729.204 kb on + strand, within LRK53_RS16980at 3729.204 kb on + strand, within LRK53_RS16980at 3729.204 kb on + strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.205 kb on - strand, within LRK53_RS16980at 3729.442 kb on + strand, within LRK53_RS16985at 3729.443 kb on - strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.691 kb on + strand, within LRK53_RS16985at 3729.692 kb on - strand, within LRK53_RS16985at 3729.692 kb on - strand, within LRK53_RS16985at 3729.692 kb on - strand, within LRK53_RS16985at 3729.701 kb on - strand, within LRK53_RS16985at 3729.786 kb on + strand, within LRK53_RS16985at 3729.836 kb on - strand, within LRK53_RS16985at 3729.836 kb on - strand, within LRK53_RS16985at 3729.836 kb on - strand, within LRK53_RS16985at 3730.147 kb on + strandat 3730.147 kb on + strandat 3730.147 kb on + strandat 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.276 kb on + strand, within LRK53_RS16990at 3730.435 kb on + strand, within LRK53_RS16990at 3730.435 kb on + strand, within LRK53_RS16990at 3730.435 kb on + strand, within LRK53_RS16990at 3730.436 kb on - strand, within LRK53_RS16990at 3730.436 kb on - strand, within LRK53_RS16990at 3730.436 kb on - strand, within LRK53_RS16990at 3730.436 kb on - strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.659 kb on + strand, within LRK53_RS16990at 3730.660 kb on - strand, within LRK53_RS16990at 3730.660 kb on - strand, within LRK53_RS16990at 3730.983 kb on + strand, within LRK53_RS16990at 3730.984 kb on - strand, within LRK53_RS16990at 3730.984 kb on - strand, within LRK53_RS16990

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,728,472 + LRK53_RS16975 0.82 -0.5
3,728,473 - LRK53_RS16975 0.82 +1.3
3,728,603 - +1.5
3,728,609 + -0.6
3,728,768 + LRK53_RS16980 0.24 -1.7
3,728,769 - LRK53_RS16980 0.24 -0.3
3,728,769 - LRK53_RS16980 0.24 -1.8
3,728,769 - LRK53_RS16980 0.24 +0.3
3,728,769 - LRK53_RS16980 0.24 -0.8
3,729,086 + LRK53_RS16980 0.71 -0.9
3,729,086 + LRK53_RS16980 0.71 -0.8
3,729,086 + LRK53_RS16980 0.71 -0.6
3,729,087 - LRK53_RS16980 0.71 +0.0
3,729,087 - LRK53_RS16980 0.71 +1.4
3,729,087 - LRK53_RS16980 0.71 -0.7
3,729,087 - LRK53_RS16980 0.71 +0.1
3,729,087 - LRK53_RS16980 0.71 -1.6
3,729,087 - LRK53_RS16980 0.71 +1.1
3,729,087 - LRK53_RS16980 0.71 +1.8
3,729,204 + LRK53_RS16980 0.88 -0.1
3,729,204 + LRK53_RS16980 0.88 -0.6
3,729,204 + LRK53_RS16980 0.88 -2.8
3,729,205 - LRK53_RS16980 0.88 -0.4
3,729,205 - LRK53_RS16980 0.88 -0.3
3,729,205 - LRK53_RS16980 0.88 -0.4
3,729,205 - LRK53_RS16980 0.88 -0.6
3,729,205 - LRK53_RS16980 0.88 -1.9
3,729,205 - LRK53_RS16980 0.88 +0.2
3,729,205 - LRK53_RS16980 0.88 -0.2
3,729,442 + LRK53_RS16985 0.19 -0.5
3,729,443 - LRK53_RS16985 0.19 +0.1
3,729,691 + LRK53_RS16985 0.51 +0.1
3,729,691 + LRK53_RS16985 0.51 -0.4
3,729,691 + LRK53_RS16985 0.51 +1.1
3,729,691 + LRK53_RS16985 0.51 -0.7
3,729,691 + LRK53_RS16985 0.51 -1.3
3,729,691 + LRK53_RS16985 0.51 -0.4
3,729,691 + LRK53_RS16985 0.51 -0.1
3,729,692 - LRK53_RS16985 0.51 -2.2
3,729,692 - LRK53_RS16985 0.51 -1.0
3,729,692 - LRK53_RS16985 0.51 -2.6
3,729,701 - LRK53_RS16985 0.52 -1.1
3,729,786 + LRK53_RS16985 0.63 +0.3
3,729,836 - LRK53_RS16985 0.69 -1.5
3,729,836 - LRK53_RS16985 0.69 +1.2
3,729,836 - LRK53_RS16985 0.69 -2.5
3,730,147 + -1.2
3,730,147 + -0.0
3,730,147 + -1.0
3,730,276 + LRK53_RS16990 0.12 -0.2
3,730,276 + LRK53_RS16990 0.12 -0.2
3,730,276 + LRK53_RS16990 0.12 -1.9
3,730,276 + LRK53_RS16990 0.12 -1.9
3,730,276 + LRK53_RS16990 0.12 +2.5
3,730,276 + LRK53_RS16990 0.12 -0.3
3,730,276 + LRK53_RS16990 0.12 -0.6
3,730,435 + LRK53_RS16990 0.27 -1.8
3,730,435 + LRK53_RS16990 0.27 +0.4
3,730,435 + LRK53_RS16990 0.27 -1.3
3,730,436 - LRK53_RS16990 0.27 +0.5
3,730,436 - LRK53_RS16990 0.27 -0.8
3,730,436 - LRK53_RS16990 0.27 -0.1
3,730,436 - LRK53_RS16990 0.27 -1.7
3,730,659 + LRK53_RS16990 0.48 -1.0
3,730,659 + LRK53_RS16990 0.48 +0.2
3,730,659 + LRK53_RS16990 0.48 -0.4
3,730,659 + LRK53_RS16990 0.48 +0.3
3,730,659 + LRK53_RS16990 0.48 +0.7
3,730,659 + LRK53_RS16990 0.48 -0.2
3,730,660 - LRK53_RS16990 0.49 -0.1
3,730,660 - LRK53_RS16990 0.49 -0.2
3,730,983 + LRK53_RS16990 0.79 +0.4
3,730,984 - LRK53_RS16990 0.79 -0.3
3,730,984 - LRK53_RS16990 0.79 -0.8

Or see this region's nucleotide sequence