Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16975 and LRK53_RS16980 are separated by 3 nucleotides LRK53_RS16980 and LRK53_RS16985 are separated by 5 nucleotides LRK53_RS16985 and LRK53_RS16990 are separated by 63 nucleotides
LRK53_RS16975: LRK53_RS16975 - sulfite exporter TauE/SafE family protein, at 3,727,861 to 3,728,604
_RS16975
LRK53_RS16980: LRK53_RS16980 - haloacid dehalogenase-like hydrolase, at 3,728,608 to 3,729,282
_RS16980
LRK53_RS16985: LRK53_RS16985 - indole-3-glycerol phosphate synthase TrpC, at 3,729,288 to 3,730,082
_RS16985
LRK53_RS16990: LRK53_RS16990 - anthranilate phosphoribosyltransferase, at 3,730,146 to 3,731,204
_RS16990
Position (kb)
3729
3730
3731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3728.472 kb on + strand, within LRK53_RS16975 at 3728.473 kb on - strand, within LRK53_RS16975 at 3728.603 kb on - strand at 3728.609 kb on + strand at 3728.768 kb on + strand, within LRK53_RS16980 at 3728.769 kb on - strand, within LRK53_RS16980 at 3728.769 kb on - strand, within LRK53_RS16980 at 3728.769 kb on - strand, within LRK53_RS16980 at 3728.769 kb on - strand, within LRK53_RS16980 at 3729.086 kb on + strand, within LRK53_RS16980 at 3729.086 kb on + strand, within LRK53_RS16980 at 3729.086 kb on + strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.087 kb on - strand, within LRK53_RS16980 at 3729.204 kb on + strand, within LRK53_RS16980 at 3729.204 kb on + strand, within LRK53_RS16980 at 3729.204 kb on + strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.205 kb on - strand, within LRK53_RS16980 at 3729.442 kb on + strand, within LRK53_RS16985 at 3729.443 kb on - strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.691 kb on + strand, within LRK53_RS16985 at 3729.692 kb on - strand, within LRK53_RS16985 at 3729.692 kb on - strand, within LRK53_RS16985 at 3729.692 kb on - strand, within LRK53_RS16985 at 3729.701 kb on - strand, within LRK53_RS16985 at 3729.786 kb on + strand, within LRK53_RS16985 at 3729.836 kb on - strand, within LRK53_RS16985 at 3729.836 kb on - strand, within LRK53_RS16985 at 3729.836 kb on - strand, within LRK53_RS16985 at 3730.147 kb on + strand at 3730.147 kb on + strand at 3730.147 kb on + strand at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.276 kb on + strand, within LRK53_RS16990 at 3730.435 kb on + strand, within LRK53_RS16990 at 3730.435 kb on + strand, within LRK53_RS16990 at 3730.435 kb on + strand, within LRK53_RS16990 at 3730.436 kb on - strand, within LRK53_RS16990 at 3730.436 kb on - strand, within LRK53_RS16990 at 3730.436 kb on - strand, within LRK53_RS16990 at 3730.436 kb on - strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.659 kb on + strand, within LRK53_RS16990 at 3730.660 kb on - strand, within LRK53_RS16990 at 3730.660 kb on - strand, within LRK53_RS16990 at 3730.983 kb on + strand, within LRK53_RS16990 at 3730.984 kb on - strand, within LRK53_RS16990 at 3730.984 kb on - strand, within LRK53_RS16990
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,728,472 + LRK53_RS16975 0.82 -0.5 3,728,473 - LRK53_RS16975 0.82 +1.3 3,728,603 - +1.5 3,728,609 + -0.6 3,728,768 + LRK53_RS16980 0.24 -1.7 3,728,769 - LRK53_RS16980 0.24 -0.3 3,728,769 - LRK53_RS16980 0.24 -1.8 3,728,769 - LRK53_RS16980 0.24 +0.3 3,728,769 - LRK53_RS16980 0.24 -0.8 3,729,086 + LRK53_RS16980 0.71 -0.9 3,729,086 + LRK53_RS16980 0.71 -0.8 3,729,086 + LRK53_RS16980 0.71 -0.6 3,729,087 - LRK53_RS16980 0.71 +0.0 3,729,087 - LRK53_RS16980 0.71 +1.4 3,729,087 - LRK53_RS16980 0.71 -0.7 3,729,087 - LRK53_RS16980 0.71 +0.1 3,729,087 - LRK53_RS16980 0.71 -1.6 3,729,087 - LRK53_RS16980 0.71 +1.1 3,729,087 - LRK53_RS16980 0.71 +1.8 3,729,204 + LRK53_RS16980 0.88 -0.1 3,729,204 + LRK53_RS16980 0.88 -0.6 3,729,204 + LRK53_RS16980 0.88 -2.8 3,729,205 - LRK53_RS16980 0.88 -0.4 3,729,205 - LRK53_RS16980 0.88 -0.3 3,729,205 - LRK53_RS16980 0.88 -0.4 3,729,205 - LRK53_RS16980 0.88 -0.6 3,729,205 - LRK53_RS16980 0.88 -1.9 3,729,205 - LRK53_RS16980 0.88 +0.2 3,729,205 - LRK53_RS16980 0.88 -0.2 3,729,442 + LRK53_RS16985 0.19 -0.5 3,729,443 - LRK53_RS16985 0.19 +0.1 3,729,691 + LRK53_RS16985 0.51 +0.1 3,729,691 + LRK53_RS16985 0.51 -0.4 3,729,691 + LRK53_RS16985 0.51 +1.1 3,729,691 + LRK53_RS16985 0.51 -0.7 3,729,691 + LRK53_RS16985 0.51 -1.3 3,729,691 + LRK53_RS16985 0.51 -0.4 3,729,691 + LRK53_RS16985 0.51 -0.1 3,729,692 - LRK53_RS16985 0.51 -2.2 3,729,692 - LRK53_RS16985 0.51 -1.0 3,729,692 - LRK53_RS16985 0.51 -2.6 3,729,701 - LRK53_RS16985 0.52 -1.1 3,729,786 + LRK53_RS16985 0.63 +0.3 3,729,836 - LRK53_RS16985 0.69 -1.5 3,729,836 - LRK53_RS16985 0.69 +1.2 3,729,836 - LRK53_RS16985 0.69 -2.5 3,730,147 + -1.2 3,730,147 + -0.0 3,730,147 + -1.0 3,730,276 + LRK53_RS16990 0.12 -0.2 3,730,276 + LRK53_RS16990 0.12 -0.2 3,730,276 + LRK53_RS16990 0.12 -1.9 3,730,276 + LRK53_RS16990 0.12 -1.9 3,730,276 + LRK53_RS16990 0.12 +2.5 3,730,276 + LRK53_RS16990 0.12 -0.3 3,730,276 + LRK53_RS16990 0.12 -0.6 3,730,435 + LRK53_RS16990 0.27 -1.8 3,730,435 + LRK53_RS16990 0.27 +0.4 3,730,435 + LRK53_RS16990 0.27 -1.3 3,730,436 - LRK53_RS16990 0.27 +0.5 3,730,436 - LRK53_RS16990 0.27 -0.8 3,730,436 - LRK53_RS16990 0.27 -0.1 3,730,436 - LRK53_RS16990 0.27 -1.7 3,730,659 + LRK53_RS16990 0.48 -1.0 3,730,659 + LRK53_RS16990 0.48 +0.2 3,730,659 + LRK53_RS16990 0.48 -0.4 3,730,659 + LRK53_RS16990 0.48 +0.3 3,730,659 + LRK53_RS16990 0.48 +0.7 3,730,659 + LRK53_RS16990 0.48 -0.2 3,730,660 - LRK53_RS16990 0.49 -0.1 3,730,660 - LRK53_RS16990 0.49 -0.2 3,730,983 + LRK53_RS16990 0.79 +0.4 3,730,984 - LRK53_RS16990 0.79 -0.3 3,730,984 - LRK53_RS16990 0.79 -0.8
Or see this region's nucleotide sequence