Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16730 and LRK53_RS16735 are separated by 287 nucleotides LRK53_RS16735 and LRK53_RS16740 are separated by 82 nucleotides LRK53_RS16740 and LRK53_RS16745 are separated by 98 nucleotides
LRK53_RS16730: LRK53_RS16730 - nucleoside hydrolase, at 3,681,455 to 3,682,390
_RS16730
LRK53_RS16735: LRK53_RS16735 - ATP-dependent DNA helicase RecG, at 3,682,678 to 3,684,792
_RS16735
LRK53_RS16740: LRK53_RS16740 - RidA family protein, at 3,684,875 to 3,685,258
_RS16740
LRK53_RS16745: LRK53_RS16745 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,685,357 to 3,687,522
_RS16745
Position (kb)
3682
3683
3684
3685 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3681.917 kb on - strand, within LRK53_RS16730 at 3682.262 kb on - strand, within LRK53_RS16730 at 3682.320 kb on + strand at 3682.321 kb on - strand at 3682.473 kb on + strand at 3682.473 kb on + strand at 3682.474 kb on - strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.758 kb on + strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3682.759 kb on - strand at 3683.095 kb on + strand, within LRK53_RS16735 at 3683.109 kb on + strand, within LRK53_RS16735 at 3683.109 kb on + strand, within LRK53_RS16735 at 3683.109 kb on + strand, within LRK53_RS16735 at 3683.237 kb on + strand, within LRK53_RS16735 at 3683.238 kb on - strand, within LRK53_RS16735 at 3683.238 kb on - strand, within LRK53_RS16735 at 3683.293 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.300 kb on + strand, within LRK53_RS16735 at 3683.301 kb on - strand, within LRK53_RS16735 at 3683.301 kb on - strand, within LRK53_RS16735 at 3683.438 kb on + strand, within LRK53_RS16735 at 3683.438 kb on + strand, within LRK53_RS16735 at 3683.439 kb on - strand, within LRK53_RS16735 at 3683.439 kb on - strand, within LRK53_RS16735 at 3683.915 kb on - strand, within LRK53_RS16735 at 3684.025 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.155 kb on + strand, within LRK53_RS16735 at 3684.156 kb on - strand, within LRK53_RS16735 at 3684.305 kb on + strand, within LRK53_RS16735 at 3684.362 kb on + strand, within LRK53_RS16735 at 3684.363 kb on - strand, within LRK53_RS16735 at 3684.363 kb on - strand, within LRK53_RS16735 at 3684.403 kb on + strand, within LRK53_RS16735 at 3684.829 kb on - strand at 3684.829 kb on - strand at 3684.972 kb on + strand, within LRK53_RS16740 at 3684.972 kb on + strand, within LRK53_RS16740 at 3684.972 kb on + strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3684.973 kb on - strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.023 kb on + strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.024 kb on - strand, within LRK53_RS16740 at 3685.173 kb on + strand, within LRK53_RS16740 at 3685.174 kb on - strand, within LRK53_RS16740 at 3685.174 kb on - strand, within LRK53_RS16740 at 3685.174 kb on - strand, within LRK53_RS16740 at 3685.174 kb on - strand, within LRK53_RS16740 at 3685.174 kb on - strand, within LRK53_RS16740 at 3685.180 kb on + strand, within LRK53_RS16740 at 3685.180 kb on + strand, within LRK53_RS16740 at 3685.180 kb on + strand, within LRK53_RS16740 at 3685.180 kb on + strand, within LRK53_RS16740 at 3685.296 kb on + strand at 3685.296 kb on + strand at 3685.373 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,681,917 - LRK53_RS16730 0.49 -0.6 3,682,262 - LRK53_RS16730 0.86 -0.9 3,682,320 + -2.2 3,682,321 - -0.5 3,682,473 + -0.3 3,682,473 + -0.9 3,682,474 - +0.8 3,682,758 + +1.1 3,682,758 + -0.5 3,682,758 + +0.1 3,682,758 + +0.1 3,682,758 + +0.3 3,682,758 + +1.2 3,682,758 + -0.7 3,682,758 + +0.7 3,682,758 + +1.0 3,682,758 + +0.7 3,682,758 + +1.0 3,682,758 + -1.0 3,682,758 + +1.0 3,682,758 + -0.3 3,682,758 + -1.4 3,682,758 + -3.4 3,682,758 + -2.1 3,682,758 + -1.0 3,682,758 + -0.2 3,682,758 + +1.0 3,682,758 + -0.7 3,682,758 + +0.5 3,682,758 + +0.8 3,682,758 + -0.9 3,682,758 + -1.3 3,682,758 + -0.5 3,682,759 - -1.9 3,682,759 - -1.2 3,682,759 - +0.7 3,682,759 - +0.5 3,682,759 - -1.0 3,682,759 - -1.9 3,682,759 - -1.9 3,682,759 - -0.4 3,682,759 - -0.3 3,682,759 - +0.0 3,682,759 - +2.5 3,682,759 - +0.4 3,682,759 - +1.5 3,682,759 - +1.7 3,682,759 - -0.5 3,683,095 + LRK53_RS16735 0.20 -0.7 3,683,109 + LRK53_RS16735 0.20 +0.4 3,683,109 + LRK53_RS16735 0.20 -0.4 3,683,109 + LRK53_RS16735 0.20 +0.4 3,683,237 + LRK53_RS16735 0.26 -1.9 3,683,238 - LRK53_RS16735 0.26 +1.4 3,683,238 - LRK53_RS16735 0.26 -1.0 3,683,293 + LRK53_RS16735 0.29 +0.4 3,683,300 + LRK53_RS16735 0.29 -0.1 3,683,300 + LRK53_RS16735 0.29 -0.6 3,683,300 + LRK53_RS16735 0.29 -0.5 3,683,300 + LRK53_RS16735 0.29 -1.2 3,683,300 + LRK53_RS16735 0.29 +0.1 3,683,300 + LRK53_RS16735 0.29 -0.5 3,683,301 - LRK53_RS16735 0.29 -0.1 3,683,301 - LRK53_RS16735 0.29 -0.7 3,683,438 + LRK53_RS16735 0.36 +0.8 3,683,438 + LRK53_RS16735 0.36 -0.6 3,683,439 - LRK53_RS16735 0.36 +0.6 3,683,439 - LRK53_RS16735 0.36 +0.6 3,683,915 - LRK53_RS16735 0.58 +2.1 3,684,025 + LRK53_RS16735 0.64 +1.7 3,684,155 + LRK53_RS16735 0.70 +0.7 3,684,155 + LRK53_RS16735 0.70 -0.5 3,684,155 + LRK53_RS16735 0.70 +0.3 3,684,155 + LRK53_RS16735 0.70 +2.4 3,684,155 + LRK53_RS16735 0.70 -1.1 3,684,155 + LRK53_RS16735 0.70 -0.1 3,684,155 + LRK53_RS16735 0.70 +2.9 3,684,156 - LRK53_RS16735 0.70 +1.6 3,684,305 + LRK53_RS16735 0.77 +0.3 3,684,362 + LRK53_RS16735 0.80 +0.7 3,684,363 - LRK53_RS16735 0.80 +0.1 3,684,363 - LRK53_RS16735 0.80 +0.3 3,684,403 + LRK53_RS16735 0.82 +0.6 3,684,829 - -1.0 3,684,829 - -1.1 3,684,972 + LRK53_RS16740 0.25 -1.4 3,684,972 + LRK53_RS16740 0.25 -1.8 3,684,972 + LRK53_RS16740 0.25 -1.8 3,684,973 - LRK53_RS16740 0.26 +1.0 3,684,973 - LRK53_RS16740 0.26 -1.2 3,684,973 - LRK53_RS16740 0.26 +1.1 3,684,973 - LRK53_RS16740 0.26 -0.2 3,684,973 - LRK53_RS16740 0.26 -1.0 3,684,973 - LRK53_RS16740 0.26 +0.4 3,684,973 - LRK53_RS16740 0.26 -0.9 3,684,973 - LRK53_RS16740 0.26 +0.5 3,684,973 - LRK53_RS16740 0.26 -1.1 3,685,023 + LRK53_RS16740 0.39 +0.5 3,685,023 + LRK53_RS16740 0.39 -0.5 3,685,023 + LRK53_RS16740 0.39 +1.7 3,685,023 + LRK53_RS16740 0.39 -1.1 3,685,023 + LRK53_RS16740 0.39 -1.1 3,685,023 + LRK53_RS16740 0.39 +0.9 3,685,023 + LRK53_RS16740 0.39 +0.8 3,685,023 + LRK53_RS16740 0.39 -1.4 3,685,023 + LRK53_RS16740 0.39 -0.0 3,685,023 + LRK53_RS16740 0.39 -1.9 3,685,023 + LRK53_RS16740 0.39 -1.0 3,685,023 + LRK53_RS16740 0.39 -1.4 3,685,023 + LRK53_RS16740 0.39 -1.3 3,685,023 + LRK53_RS16740 0.39 +1.4 3,685,023 + LRK53_RS16740 0.39 +0.1 3,685,023 + LRK53_RS16740 0.39 -0.2 3,685,024 - LRK53_RS16740 0.39 +0.7 3,685,024 - LRK53_RS16740 0.39 -0.5 3,685,024 - LRK53_RS16740 0.39 -0.1 3,685,024 - LRK53_RS16740 0.39 +2.1 3,685,024 - LRK53_RS16740 0.39 -0.3 3,685,024 - LRK53_RS16740 0.39 +1.0 3,685,024 - LRK53_RS16740 0.39 +1.3 3,685,024 - LRK53_RS16740 0.39 +0.7 3,685,024 - LRK53_RS16740 0.39 -0.7 3,685,024 - LRK53_RS16740 0.39 -1.0 3,685,024 - LRK53_RS16740 0.39 -1.6 3,685,024 - LRK53_RS16740 0.39 -1.0 3,685,024 - LRK53_RS16740 0.39 -1.0 3,685,024 - LRK53_RS16740 0.39 -0.4 3,685,024 - LRK53_RS16740 0.39 -0.1 3,685,024 - LRK53_RS16740 0.39 +0.4 3,685,024 - LRK53_RS16740 0.39 -0.1 3,685,024 - LRK53_RS16740 0.39 -0.3 3,685,173 + LRK53_RS16740 0.78 -0.2 3,685,174 - LRK53_RS16740 0.78 -0.6 3,685,174 - LRK53_RS16740 0.78 +0.2 3,685,174 - LRK53_RS16740 0.78 +1.5 3,685,174 - LRK53_RS16740 0.78 -0.5 3,685,174 - LRK53_RS16740 0.78 +2.5 3,685,180 + LRK53_RS16740 0.79 -2.0 3,685,180 + LRK53_RS16740 0.79 -0.0 3,685,180 + LRK53_RS16740 0.79 +1.3 3,685,180 + LRK53_RS16740 0.79 -0.0 3,685,296 + +1.1 3,685,296 + -1.3 3,685,373 + -0.2
Or see this region's nucleotide sequence