Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16735

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS16730 and LRK53_RS16735 are separated by 287 nucleotidesLRK53_RS16735 and LRK53_RS16740 are separated by 82 nucleotidesLRK53_RS16740 and LRK53_RS16745 are separated by 98 nucleotides LRK53_RS16730: LRK53_RS16730 - nucleoside hydrolase, at 3,681,455 to 3,682,390 _RS16730 LRK53_RS16735: LRK53_RS16735 - ATP-dependent DNA helicase RecG, at 3,682,678 to 3,684,792 _RS16735 LRK53_RS16740: LRK53_RS16740 - RidA family protein, at 3,684,875 to 3,685,258 _RS16740 LRK53_RS16745: LRK53_RS16745 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 3,685,357 to 3,687,522 _RS16745 Position (kb) 3682 3683 3684 3685Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3681.917 kb on - strand, within LRK53_RS16730at 3682.262 kb on - strand, within LRK53_RS16730at 3682.320 kb on + strandat 3682.321 kb on - strandat 3682.473 kb on + strandat 3682.473 kb on + strandat 3682.474 kb on - strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.758 kb on + strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3682.759 kb on - strandat 3683.095 kb on + strand, within LRK53_RS16735at 3683.109 kb on + strand, within LRK53_RS16735at 3683.109 kb on + strand, within LRK53_RS16735at 3683.109 kb on + strand, within LRK53_RS16735at 3683.237 kb on + strand, within LRK53_RS16735at 3683.238 kb on - strand, within LRK53_RS16735at 3683.238 kb on - strand, within LRK53_RS16735at 3683.293 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.300 kb on + strand, within LRK53_RS16735at 3683.301 kb on - strand, within LRK53_RS16735at 3683.301 kb on - strand, within LRK53_RS16735at 3683.438 kb on + strand, within LRK53_RS16735at 3683.438 kb on + strand, within LRK53_RS16735at 3683.439 kb on - strand, within LRK53_RS16735at 3683.439 kb on - strand, within LRK53_RS16735at 3683.915 kb on - strand, within LRK53_RS16735at 3684.025 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.155 kb on + strand, within LRK53_RS16735at 3684.156 kb on - strand, within LRK53_RS16735at 3684.305 kb on + strand, within LRK53_RS16735at 3684.362 kb on + strand, within LRK53_RS16735at 3684.363 kb on - strand, within LRK53_RS16735at 3684.363 kb on - strand, within LRK53_RS16735at 3684.403 kb on + strand, within LRK53_RS16735at 3684.829 kb on - strandat 3684.829 kb on - strandat 3684.972 kb on + strand, within LRK53_RS16740at 3684.972 kb on + strand, within LRK53_RS16740at 3684.972 kb on + strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3684.973 kb on - strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.023 kb on + strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.024 kb on - strand, within LRK53_RS16740at 3685.173 kb on + strand, within LRK53_RS16740at 3685.174 kb on - strand, within LRK53_RS16740at 3685.174 kb on - strand, within LRK53_RS16740at 3685.174 kb on - strand, within LRK53_RS16740at 3685.174 kb on - strand, within LRK53_RS16740at 3685.174 kb on - strand, within LRK53_RS16740at 3685.180 kb on + strand, within LRK53_RS16740at 3685.180 kb on + strand, within LRK53_RS16740at 3685.180 kb on + strand, within LRK53_RS16740at 3685.180 kb on + strand, within LRK53_RS16740at 3685.296 kb on + strandat 3685.296 kb on + strandat 3685.373 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
3,681,917 - LRK53_RS16730 0.49 -0.6
3,682,262 - LRK53_RS16730 0.86 -0.9
3,682,320 + -2.2
3,682,321 - -0.5
3,682,473 + -0.3
3,682,473 + -0.9
3,682,474 - +0.8
3,682,758 + +1.1
3,682,758 + -0.5
3,682,758 + +0.1
3,682,758 + +0.1
3,682,758 + +0.3
3,682,758 + +1.2
3,682,758 + -0.7
3,682,758 + +0.7
3,682,758 + +1.0
3,682,758 + +0.7
3,682,758 + +1.0
3,682,758 + -1.0
3,682,758 + +1.0
3,682,758 + -0.3
3,682,758 + -1.4
3,682,758 + -3.4
3,682,758 + -2.1
3,682,758 + -1.0
3,682,758 + -0.2
3,682,758 + +1.0
3,682,758 + -0.7
3,682,758 + +0.5
3,682,758 + +0.8
3,682,758 + -0.9
3,682,758 + -1.3
3,682,758 + -0.5
3,682,759 - -1.9
3,682,759 - -1.2
3,682,759 - +0.7
3,682,759 - +0.5
3,682,759 - -1.0
3,682,759 - -1.9
3,682,759 - -1.9
3,682,759 - -0.4
3,682,759 - -0.3
3,682,759 - +0.0
3,682,759 - +2.5
3,682,759 - +0.4
3,682,759 - +1.5
3,682,759 - +1.7
3,682,759 - -0.5
3,683,095 + LRK53_RS16735 0.20 -0.7
3,683,109 + LRK53_RS16735 0.20 +0.4
3,683,109 + LRK53_RS16735 0.20 -0.4
3,683,109 + LRK53_RS16735 0.20 +0.4
3,683,237 + LRK53_RS16735 0.26 -1.9
3,683,238 - LRK53_RS16735 0.26 +1.4
3,683,238 - LRK53_RS16735 0.26 -1.0
3,683,293 + LRK53_RS16735 0.29 +0.4
3,683,300 + LRK53_RS16735 0.29 -0.1
3,683,300 + LRK53_RS16735 0.29 -0.6
3,683,300 + LRK53_RS16735 0.29 -0.5
3,683,300 + LRK53_RS16735 0.29 -1.2
3,683,300 + LRK53_RS16735 0.29 +0.1
3,683,300 + LRK53_RS16735 0.29 -0.5
3,683,301 - LRK53_RS16735 0.29 -0.1
3,683,301 - LRK53_RS16735 0.29 -0.7
3,683,438 + LRK53_RS16735 0.36 +0.8
3,683,438 + LRK53_RS16735 0.36 -0.6
3,683,439 - LRK53_RS16735 0.36 +0.6
3,683,439 - LRK53_RS16735 0.36 +0.6
3,683,915 - LRK53_RS16735 0.58 +2.1
3,684,025 + LRK53_RS16735 0.64 +1.7
3,684,155 + LRK53_RS16735 0.70 +0.7
3,684,155 + LRK53_RS16735 0.70 -0.5
3,684,155 + LRK53_RS16735 0.70 +0.3
3,684,155 + LRK53_RS16735 0.70 +2.4
3,684,155 + LRK53_RS16735 0.70 -1.1
3,684,155 + LRK53_RS16735 0.70 -0.1
3,684,155 + LRK53_RS16735 0.70 +2.9
3,684,156 - LRK53_RS16735 0.70 +1.6
3,684,305 + LRK53_RS16735 0.77 +0.3
3,684,362 + LRK53_RS16735 0.80 +0.7
3,684,363 - LRK53_RS16735 0.80 +0.1
3,684,363 - LRK53_RS16735 0.80 +0.3
3,684,403 + LRK53_RS16735 0.82 +0.6
3,684,829 - -1.0
3,684,829 - -1.1
3,684,972 + LRK53_RS16740 0.25 -1.4
3,684,972 + LRK53_RS16740 0.25 -1.8
3,684,972 + LRK53_RS16740 0.25 -1.8
3,684,973 - LRK53_RS16740 0.26 +1.0
3,684,973 - LRK53_RS16740 0.26 -1.2
3,684,973 - LRK53_RS16740 0.26 +1.1
3,684,973 - LRK53_RS16740 0.26 -0.2
3,684,973 - LRK53_RS16740 0.26 -1.0
3,684,973 - LRK53_RS16740 0.26 +0.4
3,684,973 - LRK53_RS16740 0.26 -0.9
3,684,973 - LRK53_RS16740 0.26 +0.5
3,684,973 - LRK53_RS16740 0.26 -1.1
3,685,023 + LRK53_RS16740 0.39 +0.5
3,685,023 + LRK53_RS16740 0.39 -0.5
3,685,023 + LRK53_RS16740 0.39 +1.7
3,685,023 + LRK53_RS16740 0.39 -1.1
3,685,023 + LRK53_RS16740 0.39 -1.1
3,685,023 + LRK53_RS16740 0.39 +0.9
3,685,023 + LRK53_RS16740 0.39 +0.8
3,685,023 + LRK53_RS16740 0.39 -1.4
3,685,023 + LRK53_RS16740 0.39 -0.0
3,685,023 + LRK53_RS16740 0.39 -1.9
3,685,023 + LRK53_RS16740 0.39 -1.0
3,685,023 + LRK53_RS16740 0.39 -1.4
3,685,023 + LRK53_RS16740 0.39 -1.3
3,685,023 + LRK53_RS16740 0.39 +1.4
3,685,023 + LRK53_RS16740 0.39 +0.1
3,685,023 + LRK53_RS16740 0.39 -0.2
3,685,024 - LRK53_RS16740 0.39 +0.7
3,685,024 - LRK53_RS16740 0.39 -0.5
3,685,024 - LRK53_RS16740 0.39 -0.1
3,685,024 - LRK53_RS16740 0.39 +2.1
3,685,024 - LRK53_RS16740 0.39 -0.3
3,685,024 - LRK53_RS16740 0.39 +1.0
3,685,024 - LRK53_RS16740 0.39 +1.3
3,685,024 - LRK53_RS16740 0.39 +0.7
3,685,024 - LRK53_RS16740 0.39 -0.7
3,685,024 - LRK53_RS16740 0.39 -1.0
3,685,024 - LRK53_RS16740 0.39 -1.6
3,685,024 - LRK53_RS16740 0.39 -1.0
3,685,024 - LRK53_RS16740 0.39 -1.0
3,685,024 - LRK53_RS16740 0.39 -0.4
3,685,024 - LRK53_RS16740 0.39 -0.1
3,685,024 - LRK53_RS16740 0.39 +0.4
3,685,024 - LRK53_RS16740 0.39 -0.1
3,685,024 - LRK53_RS16740 0.39 -0.3
3,685,173 + LRK53_RS16740 0.78 -0.2
3,685,174 - LRK53_RS16740 0.78 -0.6
3,685,174 - LRK53_RS16740 0.78 +0.2
3,685,174 - LRK53_RS16740 0.78 +1.5
3,685,174 - LRK53_RS16740 0.78 -0.5
3,685,174 - LRK53_RS16740 0.78 +2.5
3,685,180 + LRK53_RS16740 0.79 -2.0
3,685,180 + LRK53_RS16740 0.79 -0.0
3,685,180 + LRK53_RS16740 0.79 +1.3
3,685,180 + LRK53_RS16740 0.79 -0.0
3,685,296 + +1.1
3,685,296 + -1.3
3,685,373 + -0.2

Or see this region's nucleotide sequence