Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16165

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS16155 and LRK53_RS16160 are separated by 99 nucleotidesLRK53_RS16160 and LRK53_RS16165 are separated by 1 nucleotidesLRK53_RS16165 and LRK53_RS16170 are separated by 10 nucleotides LRK53_RS16155: LRK53_RS16155 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,555,088 to 3,556,311 _RS16155 LRK53_RS16160: LRK53_RS16160 - hypothetical protein, at 3,556,411 to 3,557,010 _RS16160 LRK53_RS16165: LRK53_RS16165 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 3,557,012 to 3,557,581 _RS16165 LRK53_RS16170: LRK53_RS16170 - histone deacetylase family protein, at 3,557,592 to 3,558,512 _RS16170 Position (kb) 3557 3558Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3556.323 kb on + strandat 3556.323 kb on + strandat 3556.324 kb on - strandat 3556.384 kb on + strandat 3556.384 kb on + strandat 3556.612 kb on + strand, within LRK53_RS16160at 3556.612 kb on + strand, within LRK53_RS16160at 3556.613 kb on - strand, within LRK53_RS16160at 3556.613 kb on - strand, within LRK53_RS16160at 3556.672 kb on + strand, within LRK53_RS16160at 3556.804 kb on + strand, within LRK53_RS16160at 3556.804 kb on + strand, within LRK53_RS16160at 3556.805 kb on - strand, within LRK53_RS16160at 3556.805 kb on - strand, within LRK53_RS16160at 3556.805 kb on - strand, within LRK53_RS16160at 3556.828 kb on + strand, within LRK53_RS16160at 3556.829 kb on - strand, within LRK53_RS16160at 3556.897 kb on + strand, within LRK53_RS16160at 3556.898 kb on - strand, within LRK53_RS16160at 3556.898 kb on - strand, within LRK53_RS16160at 3556.927 kb on + strand, within LRK53_RS16160at 3556.928 kb on - strand, within LRK53_RS16160at 3556.928 kb on - strand, within LRK53_RS16160at 3556.928 kb on - strand, within LRK53_RS16160at 3557.036 kb on + strandat 3557.036 kb on + strandat 3557.036 kb on + strandat 3557.036 kb on + strandat 3557.036 kb on + strandat 3557.037 kb on - strandat 3557.037 kb on - strandat 3557.037 kb on - strandat 3557.037 kb on - strandat 3557.187 kb on + strand, within LRK53_RS16165at 3557.187 kb on + strand, within LRK53_RS16165at 3557.187 kb on + strand, within LRK53_RS16165at 3557.188 kb on - strand, within LRK53_RS16165at 3557.188 kb on - strand, within LRK53_RS16165at 3557.188 kb on - strand, within LRK53_RS16165at 3557.188 kb on - strand, within LRK53_RS16165at 3557.465 kb on + strand, within LRK53_RS16165at 3557.466 kb on - strand, within LRK53_RS16165at 3557.579 kb on + strandat 3557.579 kb on + strandat 3557.579 kb on + strandat 3557.579 kb on + strandat 3557.580 kb on - strandat 3557.580 kb on - strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.604 kb on + strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.605 kb on - strandat 3557.923 kb on + strand, within LRK53_RS16170at 3557.923 kb on + strand, within LRK53_RS16170at 3557.924 kb on - strand, within LRK53_RS16170at 3557.924 kb on - strand, within LRK53_RS16170at 3558.156 kb on + strand, within LRK53_RS16170at 3558.197 kb on + strand, within LRK53_RS16170at 3558.197 kb on + strand, within LRK53_RS16170at 3558.197 kb on + strand, within LRK53_RS16170at 3558.197 kb on + strand, within LRK53_RS16170at 3558.198 kb on - strand, within LRK53_RS16170at 3558.198 kb on - strand, within LRK53_RS16170at 3558.198 kb on - strand, within LRK53_RS16170at 3558.198 kb on - strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.372 kb on + strand, within LRK53_RS16170at 3558.373 kb on - strand, within LRK53_RS16170at 3558.453 kb on + strandat 3558.453 kb on + strandat 3558.454 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,556,323 + +0.6
3,556,323 + -0.6
3,556,324 - -0.8
3,556,384 + -0.4
3,556,384 + -0.2
3,556,612 + LRK53_RS16160 0.34 -0.3
3,556,612 + LRK53_RS16160 0.34 -0.5
3,556,613 - LRK53_RS16160 0.34 -0.1
3,556,613 - LRK53_RS16160 0.34 +0.8
3,556,672 + LRK53_RS16160 0.43 +0.1
3,556,804 + LRK53_RS16160 0.66 +0.8
3,556,804 + LRK53_RS16160 0.66 -2.6
3,556,805 - LRK53_RS16160 0.66 -0.3
3,556,805 - LRK53_RS16160 0.66 +0.1
3,556,805 - LRK53_RS16160 0.66 -0.9
3,556,828 + LRK53_RS16160 0.69 -1.7
3,556,829 - LRK53_RS16160 0.70 +0.1
3,556,897 + LRK53_RS16160 0.81 -0.3
3,556,898 - LRK53_RS16160 0.81 -1.4
3,556,898 - LRK53_RS16160 0.81 -0.3
3,556,927 + LRK53_RS16160 0.86 +0.1
3,556,928 - LRK53_RS16160 0.86 -0.6
3,556,928 - LRK53_RS16160 0.86 -0.8
3,556,928 - LRK53_RS16160 0.86 +0.5
3,557,036 + +0.4
3,557,036 + -0.1
3,557,036 + -2.5
3,557,036 + -1.9
3,557,036 + +0.1
3,557,037 - -0.1
3,557,037 - +0.1
3,557,037 - -0.1
3,557,037 - -0.1
3,557,187 + LRK53_RS16165 0.31 -0.0
3,557,187 + LRK53_RS16165 0.31 -1.4
3,557,187 + LRK53_RS16165 0.31 +0.8
3,557,188 - LRK53_RS16165 0.31 -0.5
3,557,188 - LRK53_RS16165 0.31 -0.6
3,557,188 - LRK53_RS16165 0.31 +0.9
3,557,188 - LRK53_RS16165 0.31 -0.6
3,557,465 + LRK53_RS16165 0.79 +1.0
3,557,466 - LRK53_RS16165 0.80 +1.4
3,557,579 + -0.4
3,557,579 + +0.9
3,557,579 + -0.8
3,557,579 + -2.7
3,557,580 - -2.7
3,557,580 - -0.3
3,557,604 + -0.4
3,557,604 + -0.2
3,557,604 + -0.5
3,557,604 + -2.1
3,557,604 + -1.8
3,557,604 + -0.1
3,557,604 + -0.3
3,557,604 + -0.3
3,557,604 + +1.8
3,557,604 + -1.5
3,557,604 + -1.4
3,557,604 + +1.4
3,557,604 + -0.2
3,557,604 + -0.0
3,557,604 + -3.1
3,557,604 + -0.0
3,557,604 + -0.7
3,557,605 - -1.5
3,557,605 - +0.4
3,557,605 - -0.1
3,557,605 - -1.6
3,557,605 - -1.8
3,557,605 - +0.6
3,557,605 - -0.2
3,557,605 - +0.1
3,557,605 - -0.3
3,557,605 - -2.3
3,557,605 - -0.2
3,557,605 - -0.0
3,557,923 + LRK53_RS16170 0.36 -0.3
3,557,923 + LRK53_RS16170 0.36 -1.7
3,557,924 - LRK53_RS16170 0.36 -1.4
3,557,924 - LRK53_RS16170 0.36 -2.3
3,558,156 + LRK53_RS16170 0.61 -0.2
3,558,197 + LRK53_RS16170 0.66 +1.9
3,558,197 + LRK53_RS16170 0.66 -0.0
3,558,197 + LRK53_RS16170 0.66 -0.3
3,558,197 + LRK53_RS16170 0.66 +0.4
3,558,198 - LRK53_RS16170 0.66 +0.9
3,558,198 - LRK53_RS16170 0.66 +0.0
3,558,198 - LRK53_RS16170 0.66 +0.7
3,558,198 - LRK53_RS16170 0.66 -0.4
3,558,372 + LRK53_RS16170 0.85 +0.4
3,558,372 + LRK53_RS16170 0.85 +0.2
3,558,372 + LRK53_RS16170 0.85 -1.0
3,558,372 + LRK53_RS16170 0.85 +2.0
3,558,372 + LRK53_RS16170 0.85 -1.0
3,558,372 + LRK53_RS16170 0.85 -1.4
3,558,372 + LRK53_RS16170 0.85 -2.7
3,558,372 + LRK53_RS16170 0.85 +0.6
3,558,373 - LRK53_RS16170 0.85 +0.6
3,558,453 + +1.4
3,558,453 + -2.2
3,558,454 - +0.4

Or see this region's nucleotide sequence