Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16155 and LRK53_RS16160 are separated by 99 nucleotides LRK53_RS16160 and LRK53_RS16165 are separated by 1 nucleotides LRK53_RS16165 and LRK53_RS16170 are separated by 10 nucleotides
LRK53_RS16155: LRK53_RS16155 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 3,555,088 to 3,556,311
_RS16155
LRK53_RS16160: LRK53_RS16160 - hypothetical protein, at 3,556,411 to 3,557,010
_RS16160
LRK53_RS16165: LRK53_RS16165 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 3,557,012 to 3,557,581
_RS16165
LRK53_RS16170: LRK53_RS16170 - histone deacetylase family protein, at 3,557,592 to 3,558,512
_RS16170
Position (kb)
3557
3558 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3556.323 kb on + strand at 3556.323 kb on + strand at 3556.324 kb on - strand at 3556.384 kb on + strand at 3556.384 kb on + strand at 3556.612 kb on + strand, within LRK53_RS16160 at 3556.612 kb on + strand, within LRK53_RS16160 at 3556.613 kb on - strand, within LRK53_RS16160 at 3556.613 kb on - strand, within LRK53_RS16160 at 3556.672 kb on + strand, within LRK53_RS16160 at 3556.804 kb on + strand, within LRK53_RS16160 at 3556.804 kb on + strand, within LRK53_RS16160 at 3556.805 kb on - strand, within LRK53_RS16160 at 3556.805 kb on - strand, within LRK53_RS16160 at 3556.805 kb on - strand, within LRK53_RS16160 at 3556.828 kb on + strand, within LRK53_RS16160 at 3556.829 kb on - strand, within LRK53_RS16160 at 3556.897 kb on + strand, within LRK53_RS16160 at 3556.898 kb on - strand, within LRK53_RS16160 at 3556.898 kb on - strand, within LRK53_RS16160 at 3556.927 kb on + strand, within LRK53_RS16160 at 3556.928 kb on - strand, within LRK53_RS16160 at 3556.928 kb on - strand, within LRK53_RS16160 at 3556.928 kb on - strand, within LRK53_RS16160 at 3557.036 kb on + strand at 3557.036 kb on + strand at 3557.036 kb on + strand at 3557.036 kb on + strand at 3557.036 kb on + strand at 3557.037 kb on - strand at 3557.037 kb on - strand at 3557.037 kb on - strand at 3557.037 kb on - strand at 3557.187 kb on + strand, within LRK53_RS16165 at 3557.187 kb on + strand, within LRK53_RS16165 at 3557.187 kb on + strand, within LRK53_RS16165 at 3557.188 kb on - strand, within LRK53_RS16165 at 3557.188 kb on - strand, within LRK53_RS16165 at 3557.188 kb on - strand, within LRK53_RS16165 at 3557.188 kb on - strand, within LRK53_RS16165 at 3557.465 kb on + strand, within LRK53_RS16165 at 3557.466 kb on - strand, within LRK53_RS16165 at 3557.579 kb on + strand at 3557.579 kb on + strand at 3557.579 kb on + strand at 3557.579 kb on + strand at 3557.580 kb on - strand at 3557.580 kb on - strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.604 kb on + strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.605 kb on - strand at 3557.923 kb on + strand, within LRK53_RS16170 at 3557.923 kb on + strand, within LRK53_RS16170 at 3557.924 kb on - strand, within LRK53_RS16170 at 3557.924 kb on - strand, within LRK53_RS16170 at 3558.156 kb on + strand, within LRK53_RS16170 at 3558.197 kb on + strand, within LRK53_RS16170 at 3558.197 kb on + strand, within LRK53_RS16170 at 3558.197 kb on + strand, within LRK53_RS16170 at 3558.197 kb on + strand, within LRK53_RS16170 at 3558.198 kb on - strand, within LRK53_RS16170 at 3558.198 kb on - strand, within LRK53_RS16170 at 3558.198 kb on - strand, within LRK53_RS16170 at 3558.198 kb on - strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.372 kb on + strand, within LRK53_RS16170 at 3558.373 kb on - strand, within LRK53_RS16170 at 3558.453 kb on + strand at 3558.453 kb on + strand at 3558.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,556,323 + +0.6 3,556,323 + -0.6 3,556,324 - -0.8 3,556,384 + -0.4 3,556,384 + -0.2 3,556,612 + LRK53_RS16160 0.34 -0.3 3,556,612 + LRK53_RS16160 0.34 -0.5 3,556,613 - LRK53_RS16160 0.34 -0.1 3,556,613 - LRK53_RS16160 0.34 +0.8 3,556,672 + LRK53_RS16160 0.43 +0.1 3,556,804 + LRK53_RS16160 0.66 +0.8 3,556,804 + LRK53_RS16160 0.66 -2.6 3,556,805 - LRK53_RS16160 0.66 -0.3 3,556,805 - LRK53_RS16160 0.66 +0.1 3,556,805 - LRK53_RS16160 0.66 -0.9 3,556,828 + LRK53_RS16160 0.69 -1.7 3,556,829 - LRK53_RS16160 0.70 +0.1 3,556,897 + LRK53_RS16160 0.81 -0.3 3,556,898 - LRK53_RS16160 0.81 -1.4 3,556,898 - LRK53_RS16160 0.81 -0.3 3,556,927 + LRK53_RS16160 0.86 +0.1 3,556,928 - LRK53_RS16160 0.86 -0.6 3,556,928 - LRK53_RS16160 0.86 -0.8 3,556,928 - LRK53_RS16160 0.86 +0.5 3,557,036 + +0.4 3,557,036 + -0.1 3,557,036 + -2.5 3,557,036 + -1.9 3,557,036 + +0.1 3,557,037 - -0.1 3,557,037 - +0.1 3,557,037 - -0.1 3,557,037 - -0.1 3,557,187 + LRK53_RS16165 0.31 -0.0 3,557,187 + LRK53_RS16165 0.31 -1.4 3,557,187 + LRK53_RS16165 0.31 +0.8 3,557,188 - LRK53_RS16165 0.31 -0.5 3,557,188 - LRK53_RS16165 0.31 -0.6 3,557,188 - LRK53_RS16165 0.31 +0.9 3,557,188 - LRK53_RS16165 0.31 -0.6 3,557,465 + LRK53_RS16165 0.79 +1.0 3,557,466 - LRK53_RS16165 0.80 +1.4 3,557,579 + -0.4 3,557,579 + +0.9 3,557,579 + -0.8 3,557,579 + -2.7 3,557,580 - -2.7 3,557,580 - -0.3 3,557,604 + -0.4 3,557,604 + -0.2 3,557,604 + -0.5 3,557,604 + -2.1 3,557,604 + -1.8 3,557,604 + -0.1 3,557,604 + -0.3 3,557,604 + -0.3 3,557,604 + +1.8 3,557,604 + -1.5 3,557,604 + -1.4 3,557,604 + +1.4 3,557,604 + -0.2 3,557,604 + -0.0 3,557,604 + -3.1 3,557,604 + -0.0 3,557,604 + -0.7 3,557,605 - -1.5 3,557,605 - +0.4 3,557,605 - -0.1 3,557,605 - -1.6 3,557,605 - -1.8 3,557,605 - +0.6 3,557,605 - -0.2 3,557,605 - +0.1 3,557,605 - -0.3 3,557,605 - -2.3 3,557,605 - -0.2 3,557,605 - -0.0 3,557,923 + LRK53_RS16170 0.36 -0.3 3,557,923 + LRK53_RS16170 0.36 -1.7 3,557,924 - LRK53_RS16170 0.36 -1.4 3,557,924 - LRK53_RS16170 0.36 -2.3 3,558,156 + LRK53_RS16170 0.61 -0.2 3,558,197 + LRK53_RS16170 0.66 +1.9 3,558,197 + LRK53_RS16170 0.66 -0.0 3,558,197 + LRK53_RS16170 0.66 -0.3 3,558,197 + LRK53_RS16170 0.66 +0.4 3,558,198 - LRK53_RS16170 0.66 +0.9 3,558,198 - LRK53_RS16170 0.66 +0.0 3,558,198 - LRK53_RS16170 0.66 +0.7 3,558,198 - LRK53_RS16170 0.66 -0.4 3,558,372 + LRK53_RS16170 0.85 +0.4 3,558,372 + LRK53_RS16170 0.85 +0.2 3,558,372 + LRK53_RS16170 0.85 -1.0 3,558,372 + LRK53_RS16170 0.85 +2.0 3,558,372 + LRK53_RS16170 0.85 -1.0 3,558,372 + LRK53_RS16170 0.85 -1.4 3,558,372 + LRK53_RS16170 0.85 -2.7 3,558,372 + LRK53_RS16170 0.85 +0.6 3,558,373 - LRK53_RS16170 0.85 +0.6 3,558,453 + +1.4 3,558,453 + -2.2 3,558,454 - +0.4
Or see this region's nucleotide sequence