Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15730

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15720 and LRK53_RS15725 are separated by 43 nucleotidesLRK53_RS15725 and LRK53_RS15730 overlap by 8 nucleotidesLRK53_RS15730 and LRK53_RS15735 are separated by 172 nucleotides LRK53_RS15720: LRK53_RS15720 - RNase adapter RapZ, at 3,440,978 to 3,441,883 _RS15720 LRK53_RS15725: LRK53_RS15725 - PTS fructose transporter subunit IIA, at 3,441,927 to 3,442,319 _RS15725 LRK53_RS15730: LRK53_RS15730 - HPr family phosphocarrier protein, at 3,442,312 to 3,442,581 _RS15730 LRK53_RS15735: LRK53_RS15735 - phosphoenolpyruvate--protein phosphotransferase, at 3,442,754 to 3,444,496 _RS15735 Position (kb) 3442 3443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3441.329 kb on + strand, within LRK53_RS15720at 3441.329 kb on + strand, within LRK53_RS15720at 3441.330 kb on - strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.692 kb on + strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.693 kb on - strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.758 kb on + strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.759 kb on - strand, within LRK53_RS15720at 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.806 kb on + strandat 3441.807 kb on - strandat 3441.807 kb on - strandat 3441.834 kb on - strandat 3442.134 kb on + strand, within LRK53_RS15725at 3442.134 kb on + strand, within LRK53_RS15725at 3442.134 kb on + strand, within LRK53_RS15725at 3442.134 kb on + strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.135 kb on - strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.183 kb on + strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.184 kb on - strand, within LRK53_RS15725at 3442.231 kb on + strand, within LRK53_RS15725at 3442.231 kb on + strand, within LRK53_RS15725at 3442.231 kb on + strand, within LRK53_RS15725at 3442.231 kb on + strand, within LRK53_RS15725at 3442.232 kb on - strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.239 kb on + strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.240 kb on - strand, within LRK53_RS15725at 3442.379 kb on + strand, within LRK53_RS15730at 3442.379 kb on + strand, within LRK53_RS15730at 3442.380 kb on - strand, within LRK53_RS15730at 3442.380 kb on - strand, within LRK53_RS15730

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,441,329 + LRK53_RS15720 0.39 -1.9
3,441,329 + LRK53_RS15720 0.39 +1.1
3,441,330 - LRK53_RS15720 0.39 -1.1
3,441,692 + LRK53_RS15720 0.79 -0.9
3,441,692 + LRK53_RS15720 0.79 +0.4
3,441,692 + LRK53_RS15720 0.79 +0.1
3,441,692 + LRK53_RS15720 0.79 -2.0
3,441,692 + LRK53_RS15720 0.79 +1.5
3,441,692 + LRK53_RS15720 0.79 -0.8
3,441,692 + LRK53_RS15720 0.79 -0.3
3,441,692 + LRK53_RS15720 0.79 -1.2
3,441,692 + LRK53_RS15720 0.79 -1.9
3,441,692 + LRK53_RS15720 0.79 -0.6
3,441,693 - LRK53_RS15720 0.79 +1.1
3,441,693 - LRK53_RS15720 0.79 -1.7
3,441,693 - LRK53_RS15720 0.79 -1.3
3,441,693 - LRK53_RS15720 0.79 -1.5
3,441,693 - LRK53_RS15720 0.79 +0.5
3,441,693 - LRK53_RS15720 0.79 +0.4
3,441,693 - LRK53_RS15720 0.79 -1.2
3,441,693 - LRK53_RS15720 0.79 +0.1
3,441,693 - LRK53_RS15720 0.79 -1.6
3,441,758 + LRK53_RS15720 0.86 -1.1
3,441,758 + LRK53_RS15720 0.86 -0.6
3,441,758 + LRK53_RS15720 0.86 +0.1
3,441,758 + LRK53_RS15720 0.86 +1.2
3,441,758 + LRK53_RS15720 0.86 +1.1
3,441,758 + LRK53_RS15720 0.86 -0.9
3,441,758 + LRK53_RS15720 0.86 -0.0
3,441,758 + LRK53_RS15720 0.86 +1.9
3,441,758 + LRK53_RS15720 0.86 -0.3
3,441,758 + LRK53_RS15720 0.86 +1.1
3,441,758 + LRK53_RS15720 0.86 +0.7
3,441,758 + LRK53_RS15720 0.86 -1.8
3,441,758 + LRK53_RS15720 0.86 +0.4
3,441,758 + LRK53_RS15720 0.86 +0.4
3,441,758 + LRK53_RS15720 0.86 -0.3
3,441,759 - LRK53_RS15720 0.86 -2.0
3,441,759 - LRK53_RS15720 0.86 -0.6
3,441,759 - LRK53_RS15720 0.86 -0.5
3,441,759 - LRK53_RS15720 0.86 -1.1
3,441,759 - LRK53_RS15720 0.86 -1.7
3,441,759 - LRK53_RS15720 0.86 -0.3
3,441,759 - LRK53_RS15720 0.86 -0.3
3,441,759 - LRK53_RS15720 0.86 -0.3
3,441,759 - LRK53_RS15720 0.86 +0.9
3,441,759 - LRK53_RS15720 0.86 -0.3
3,441,759 - LRK53_RS15720 0.86 +0.2
3,441,759 - LRK53_RS15720 0.86 -1.5
3,441,759 - LRK53_RS15720 0.86 -1.7
3,441,806 + -0.5
3,441,806 + -0.8
3,441,806 + -0.6
3,441,806 + -1.3
3,441,806 + -1.3
3,441,806 + -0.5
3,441,806 + -1.7
3,441,807 - +0.4
3,441,807 - -4.1
3,441,834 - +0.1
3,442,134 + LRK53_RS15725 0.53 -0.4
3,442,134 + LRK53_RS15725 0.53 -0.5
3,442,134 + LRK53_RS15725 0.53 -3.2
3,442,134 + LRK53_RS15725 0.53 -0.7
3,442,135 - LRK53_RS15725 0.53 +0.1
3,442,135 - LRK53_RS15725 0.53 -0.5
3,442,135 - LRK53_RS15725 0.53 -0.2
3,442,135 - LRK53_RS15725 0.53 -1.7
3,442,135 - LRK53_RS15725 0.53 +0.1
3,442,135 - LRK53_RS15725 0.53 +0.2
3,442,183 + LRK53_RS15725 0.65 -1.1
3,442,183 + LRK53_RS15725 0.65 -0.0
3,442,183 + LRK53_RS15725 0.65 -1.8
3,442,183 + LRK53_RS15725 0.65 -0.1
3,442,183 + LRK53_RS15725 0.65 +1.3
3,442,183 + LRK53_RS15725 0.65 +0.1
3,442,183 + LRK53_RS15725 0.65 -0.1
3,442,183 + LRK53_RS15725 0.65 +0.3
3,442,183 + LRK53_RS15725 0.65 -0.6
3,442,183 + LRK53_RS15725 0.65 -0.2
3,442,183 + LRK53_RS15725 0.65 -0.1
3,442,183 + LRK53_RS15725 0.65 -2.4
3,442,183 + LRK53_RS15725 0.65 -0.5
3,442,183 + LRK53_RS15725 0.65 +0.1
3,442,183 + LRK53_RS15725 0.65 -2.3
3,442,183 + LRK53_RS15725 0.65 -0.7
3,442,183 + LRK53_RS15725 0.65 -1.1
3,442,183 + LRK53_RS15725 0.65 +0.4
3,442,183 + LRK53_RS15725 0.65 -0.3
3,442,183 + LRK53_RS15725 0.65 -0.3
3,442,183 + LRK53_RS15725 0.65 -0.4
3,442,183 + LRK53_RS15725 0.65 +0.3
3,442,183 + LRK53_RS15725 0.65 -0.2
3,442,183 + LRK53_RS15725 0.65 +0.2
3,442,183 + LRK53_RS15725 0.65 +0.3
3,442,184 - LRK53_RS15725 0.65 +0.4
3,442,184 - LRK53_RS15725 0.65 -1.1
3,442,184 - LRK53_RS15725 0.65 -1.1
3,442,184 - LRK53_RS15725 0.65 -0.6
3,442,184 - LRK53_RS15725 0.65 -0.3
3,442,184 - LRK53_RS15725 0.65 -0.5
3,442,184 - LRK53_RS15725 0.65 -0.0
3,442,184 - LRK53_RS15725 0.65 +0.4
3,442,184 - LRK53_RS15725 0.65 -0.9
3,442,184 - LRK53_RS15725 0.65 -0.7
3,442,184 - LRK53_RS15725 0.65 -1.6
3,442,184 - LRK53_RS15725 0.65 -0.6
3,442,184 - LRK53_RS15725 0.65 -0.8
3,442,184 - LRK53_RS15725 0.65 -1.4
3,442,184 - LRK53_RS15725 0.65 -0.4
3,442,184 - LRK53_RS15725 0.65 +0.0
3,442,184 - LRK53_RS15725 0.65 +0.2
3,442,184 - LRK53_RS15725 0.65 -0.3
3,442,184 - LRK53_RS15725 0.65 -0.3
3,442,184 - LRK53_RS15725 0.65 +1.3
3,442,184 - LRK53_RS15725 0.65 +0.2
3,442,184 - LRK53_RS15725 0.65 -0.6
3,442,184 - LRK53_RS15725 0.65 -1.6
3,442,184 - LRK53_RS15725 0.65 -2.3
3,442,184 - LRK53_RS15725 0.65 -0.3
3,442,184 - LRK53_RS15725 0.65 -0.4
3,442,231 + LRK53_RS15725 0.77 +0.0
3,442,231 + LRK53_RS15725 0.77 -0.3
3,442,231 + LRK53_RS15725 0.77 +0.6
3,442,231 + LRK53_RS15725 0.77 -0.9
3,442,232 - LRK53_RS15725 0.78 +0.5
3,442,239 + LRK53_RS15725 0.79 +2.4
3,442,239 + LRK53_RS15725 0.79 -0.1
3,442,239 + LRK53_RS15725 0.79 -0.4
3,442,239 + LRK53_RS15725 0.79 -0.5
3,442,239 + LRK53_RS15725 0.79 +0.3
3,442,239 + LRK53_RS15725 0.79 -0.9
3,442,239 + LRK53_RS15725 0.79 +0.1
3,442,239 + LRK53_RS15725 0.79 -0.3
3,442,239 + LRK53_RS15725 0.79 -0.2
3,442,239 + LRK53_RS15725 0.79 -0.1
3,442,239 + LRK53_RS15725 0.79 -0.0
3,442,239 + LRK53_RS15725 0.79 -0.2
3,442,239 + LRK53_RS15725 0.79 -0.2
3,442,239 + LRK53_RS15725 0.79 -0.5
3,442,239 + LRK53_RS15725 0.79 +0.3
3,442,239 + LRK53_RS15725 0.79 -1.1
3,442,239 + LRK53_RS15725 0.79 -0.1
3,442,239 + LRK53_RS15725 0.79 -0.6
3,442,239 + LRK53_RS15725 0.79 +0.4
3,442,239 + LRK53_RS15725 0.79 -0.1
3,442,239 + LRK53_RS15725 0.79 -1.3
3,442,239 + LRK53_RS15725 0.79 +1.7
3,442,239 + LRK53_RS15725 0.79 -1.2
3,442,239 + LRK53_RS15725 0.79 +0.5
3,442,239 + LRK53_RS15725 0.79 +1.0
3,442,239 + LRK53_RS15725 0.79 +0.9
3,442,240 - LRK53_RS15725 0.80 +0.8
3,442,240 - LRK53_RS15725 0.80 -0.6
3,442,240 - LRK53_RS15725 0.80 -0.6
3,442,240 - LRK53_RS15725 0.80 -1.1
3,442,240 - LRK53_RS15725 0.80 +0.2
3,442,240 - LRK53_RS15725 0.80 +0.8
3,442,240 - LRK53_RS15725 0.80 -1.5
3,442,240 - LRK53_RS15725 0.80 -0.0
3,442,240 - LRK53_RS15725 0.80 -1.3
3,442,240 - LRK53_RS15725 0.80 -0.0
3,442,240 - LRK53_RS15725 0.80 +0.4
3,442,240 - LRK53_RS15725 0.80 -2.0
3,442,240 - LRK53_RS15725 0.80 -1.8
3,442,240 - LRK53_RS15725 0.80 -3.1
3,442,240 - LRK53_RS15725 0.80 -0.3
3,442,240 - LRK53_RS15725 0.80 -2.6
3,442,240 - LRK53_RS15725 0.80 +1.2
3,442,240 - LRK53_RS15725 0.80 -0.1
3,442,240 - LRK53_RS15725 0.80 +0.1
3,442,240 - LRK53_RS15725 0.80 +0.7
3,442,240 - LRK53_RS15725 0.80 -0.9
3,442,240 - LRK53_RS15725 0.80 -2.7
3,442,240 - LRK53_RS15725 0.80 +2.6
3,442,240 - LRK53_RS15725 0.80 -0.6
3,442,240 - LRK53_RS15725 0.80 -1.9
3,442,240 - LRK53_RS15725 0.80 -0.3
3,442,379 + LRK53_RS15730 0.25 +1.7
3,442,379 + LRK53_RS15730 0.25 -0.9
3,442,380 - LRK53_RS15730 0.25 -0.3
3,442,380 - LRK53_RS15730 0.25 +0.1

Or see this region's nucleotide sequence