Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15145 and LRK53_RS15150 are separated by 152 nucleotides LRK53_RS15150 and LRK53_RS15155 are separated by 49 nucleotides LRK53_RS15155 and LRK53_RS15160 are separated by 158 nucleotides
LRK53_RS15145: LRK53_RS15145 - flagellar basal body L-ring protein FlgH, at 3,307,932 to 3,308,606
_RS15145
LRK53_RS15150: LRK53_RS15150 - flagellar basal-body rod protein FlgG, at 3,308,759 to 3,309,544
_RS15150
LRK53_RS15155: LRK53_RS15155 - flagellar basal-body rod protein FlgF, at 3,309,594 to 3,310,334
_RS15155
LRK53_RS15160: LRK53_RS15160 - flagellar hook protein FlgE, at 3,310,493 to 3,311,716
_RS15160
Position (kb)
3308
3309
3310 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3307.923 kb on + strand at 3307.923 kb on + strand at 3307.923 kb on + strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.310 kb on - strand, within LRK53_RS15145 at 3308.461 kb on + strand, within LRK53_RS15145 at 3308.461 kb on + strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.826 kb on + strand at 3308.826 kb on + strand at 3308.826 kb on + strand at 3308.827 kb on - strand at 3308.827 kb on - strand at 3308.827 kb on - strand at 3308.970 kb on + strand, within LRK53_RS15150 at 3308.970 kb on + strand, within LRK53_RS15150 at 3308.971 kb on - strand, within LRK53_RS15150 at 3309.204 kb on + strand, within LRK53_RS15150 at 3309.204 kb on + strand, within LRK53_RS15150 at 3309.205 kb on - strand, within LRK53_RS15150 at 3309.205 kb on - strand, within LRK53_RS15150 at 3309.444 kb on + strand, within LRK53_RS15150 at 3309.444 kb on + strand, within LRK53_RS15150 at 3309.670 kb on + strand, within LRK53_RS15155 at 3309.670 kb on + strand, within LRK53_RS15155 at 3309.670 kb on + strand, within LRK53_RS15155 at 3309.671 kb on - strand, within LRK53_RS15155 at 3310.037 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.039 kb on + strand, within LRK53_RS15155 at 3310.040 kb on - strand, within LRK53_RS15155 at 3310.040 kb on - strand, within LRK53_RS15155 at 3310.040 kb on - strand, within LRK53_RS15155 at 3310.040 kb on - strand, within LRK53_RS15155 at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.314 kb on + strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.315 kb on - strand at 3310.318 kb on + strand at 3310.318 kb on + strand at 3310.318 kb on + strand at 3310.318 kb on + strand at 3310.318 kb on + strand at 3310.318 kb on + strand at 3310.319 kb on - strand at 3310.319 kb on - strand at 3310.319 kb on - strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.494 kb on + strand at 3310.495 kb on - strand at 3310.495 kb on - strand at 3310.495 kb on - strand at 3310.498 kb on + strand at 3310.498 kb on + strand at 3310.498 kb on + strand at 3310.498 kb on + strand at 3310.499 kb on - strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.504 kb on + strand at 3310.505 kb on - strand at 3310.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,307,923 + -0.3 3,307,923 + +2.4 3,307,923 + +0.9 3,307,924 - -0.9 3,307,924 - -2.2 3,307,924 - -1.7 3,307,924 - +2.1 3,307,924 - +1.1 3,308,014 + LRK53_RS15145 0.12 -0.1 3,308,014 + LRK53_RS15145 0.12 -2.7 3,308,014 + LRK53_RS15145 0.12 +0.1 3,308,014 + LRK53_RS15145 0.12 -0.5 3,308,015 - LRK53_RS15145 0.12 -0.5 3,308,015 - LRK53_RS15145 0.12 -0.9 3,308,015 - LRK53_RS15145 0.12 -0.1 3,308,310 - LRK53_RS15145 0.56 -1.7 3,308,461 + LRK53_RS15145 0.78 +1.3 3,308,461 + LRK53_RS15145 0.78 +0.3 3,308,462 - LRK53_RS15145 0.79 -2.0 3,308,462 - LRK53_RS15145 0.79 -2.4 3,308,462 - LRK53_RS15145 0.79 -1.5 3,308,462 - LRK53_RS15145 0.79 +0.3 3,308,826 + -1.6 3,308,826 + -0.4 3,308,826 + -0.1 3,308,827 - -1.3 3,308,827 - +0.5 3,308,827 - -0.6 3,308,970 + LRK53_RS15150 0.27 +0.4 3,308,970 + LRK53_RS15150 0.27 +0.4 3,308,971 - LRK53_RS15150 0.27 +2.7 3,309,204 + LRK53_RS15150 0.57 +0.3 3,309,204 + LRK53_RS15150 0.57 -0.2 3,309,205 - LRK53_RS15150 0.57 -0.7 3,309,205 - LRK53_RS15150 0.57 +0.1 3,309,444 + LRK53_RS15150 0.87 +0.9 3,309,444 + LRK53_RS15150 0.87 -2.3 3,309,670 + LRK53_RS15155 0.10 -0.4 3,309,670 + LRK53_RS15155 0.10 -0.5 3,309,670 + LRK53_RS15155 0.10 +0.3 3,309,671 - LRK53_RS15155 0.10 +0.3 3,310,037 + LRK53_RS15155 0.60 +2.8 3,310,039 + LRK53_RS15155 0.60 -2.3 3,310,039 + LRK53_RS15155 0.60 +0.7 3,310,039 + LRK53_RS15155 0.60 -0.7 3,310,039 + LRK53_RS15155 0.60 -1.2 3,310,039 + LRK53_RS15155 0.60 -0.0 3,310,039 + LRK53_RS15155 0.60 -0.9 3,310,039 + LRK53_RS15155 0.60 -1.7 3,310,039 + LRK53_RS15155 0.60 -0.1 3,310,040 - LRK53_RS15155 0.60 -0.3 3,310,040 - LRK53_RS15155 0.60 +0.7 3,310,040 - LRK53_RS15155 0.60 -0.8 3,310,040 - LRK53_RS15155 0.60 -2.1 3,310,314 + +1.4 3,310,314 + -0.3 3,310,314 + -1.5 3,310,314 + -2.4 3,310,314 + -1.1 3,310,314 + +0.9 3,310,314 + +1.3 3,310,314 + +0.1 3,310,314 + +0.2 3,310,314 + +2.1 3,310,314 + -0.3 3,310,314 + -2.0 3,310,314 + +0.8 3,310,314 + +0.4 3,310,315 - -0.1 3,310,315 - +1.5 3,310,315 - +0.1 3,310,315 - -0.3 3,310,315 - -0.5 3,310,315 - +1.3 3,310,315 - -1.0 3,310,318 + -1.1 3,310,318 + -1.0 3,310,318 + -1.3 3,310,318 + +0.7 3,310,318 + -2.5 3,310,318 + -0.8 3,310,319 - -0.2 3,310,319 - -0.6 3,310,319 - -0.7 3,310,494 + -0.7 3,310,494 + +0.9 3,310,494 + -0.3 3,310,494 + +1.1 3,310,494 + -0.7 3,310,494 + -0.9 3,310,494 + -1.6 3,310,494 + -1.7 3,310,494 + +1.1 3,310,495 - +0.2 3,310,495 - -0.7 3,310,495 - -0.8 3,310,498 + -0.4 3,310,498 + -0.7 3,310,498 + +0.7 3,310,498 + -0.5 3,310,499 - -0.8 3,310,504 + -0.1 3,310,504 + +0.9 3,310,504 + +1.6 3,310,504 + -1.9 3,310,504 + -0.5 3,310,504 + -0.1 3,310,504 + +2.7 3,310,505 - -1.2 3,310,505 - -1.7
Or see this region's nucleotide sequence