Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15150

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15145 and LRK53_RS15150 are separated by 152 nucleotidesLRK53_RS15150 and LRK53_RS15155 are separated by 49 nucleotidesLRK53_RS15155 and LRK53_RS15160 are separated by 158 nucleotides LRK53_RS15145: LRK53_RS15145 - flagellar basal body L-ring protein FlgH, at 3,307,932 to 3,308,606 _RS15145 LRK53_RS15150: LRK53_RS15150 - flagellar basal-body rod protein FlgG, at 3,308,759 to 3,309,544 _RS15150 LRK53_RS15155: LRK53_RS15155 - flagellar basal-body rod protein FlgF, at 3,309,594 to 3,310,334 _RS15155 LRK53_RS15160: LRK53_RS15160 - flagellar hook protein FlgE, at 3,310,493 to 3,311,716 _RS15160 Position (kb) 3308 3309 3310Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3307.923 kb on + strandat 3307.923 kb on + strandat 3307.923 kb on + strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.310 kb on - strand, within LRK53_RS15145at 3308.461 kb on + strand, within LRK53_RS15145at 3308.461 kb on + strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.826 kb on + strandat 3308.826 kb on + strandat 3308.826 kb on + strandat 3308.827 kb on - strandat 3308.827 kb on - strandat 3308.827 kb on - strandat 3308.970 kb on + strand, within LRK53_RS15150at 3308.970 kb on + strand, within LRK53_RS15150at 3308.971 kb on - strand, within LRK53_RS15150at 3309.204 kb on + strand, within LRK53_RS15150at 3309.204 kb on + strand, within LRK53_RS15150at 3309.205 kb on - strand, within LRK53_RS15150at 3309.205 kb on - strand, within LRK53_RS15150at 3309.444 kb on + strand, within LRK53_RS15150at 3309.444 kb on + strand, within LRK53_RS15150at 3309.670 kb on + strand, within LRK53_RS15155at 3309.670 kb on + strand, within LRK53_RS15155at 3309.670 kb on + strand, within LRK53_RS15155at 3309.671 kb on - strand, within LRK53_RS15155at 3310.037 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.039 kb on + strand, within LRK53_RS15155at 3310.040 kb on - strand, within LRK53_RS15155at 3310.040 kb on - strand, within LRK53_RS15155at 3310.040 kb on - strand, within LRK53_RS15155at 3310.040 kb on - strand, within LRK53_RS15155at 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.314 kb on + strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.315 kb on - strandat 3310.318 kb on + strandat 3310.318 kb on + strandat 3310.318 kb on + strandat 3310.318 kb on + strandat 3310.318 kb on + strandat 3310.318 kb on + strandat 3310.319 kb on - strandat 3310.319 kb on - strandat 3310.319 kb on - strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.494 kb on + strandat 3310.495 kb on - strandat 3310.495 kb on - strandat 3310.495 kb on - strandat 3310.498 kb on + strandat 3310.498 kb on + strandat 3310.498 kb on + strandat 3310.498 kb on + strandat 3310.499 kb on - strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.504 kb on + strandat 3310.505 kb on - strandat 3310.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,307,923 + -0.3
3,307,923 + +2.4
3,307,923 + +0.9
3,307,924 - -0.9
3,307,924 - -2.2
3,307,924 - -1.7
3,307,924 - +2.1
3,307,924 - +1.1
3,308,014 + LRK53_RS15145 0.12 -0.1
3,308,014 + LRK53_RS15145 0.12 -2.7
3,308,014 + LRK53_RS15145 0.12 +0.1
3,308,014 + LRK53_RS15145 0.12 -0.5
3,308,015 - LRK53_RS15145 0.12 -0.5
3,308,015 - LRK53_RS15145 0.12 -0.9
3,308,015 - LRK53_RS15145 0.12 -0.1
3,308,310 - LRK53_RS15145 0.56 -1.7
3,308,461 + LRK53_RS15145 0.78 +1.3
3,308,461 + LRK53_RS15145 0.78 +0.3
3,308,462 - LRK53_RS15145 0.79 -2.0
3,308,462 - LRK53_RS15145 0.79 -2.4
3,308,462 - LRK53_RS15145 0.79 -1.5
3,308,462 - LRK53_RS15145 0.79 +0.3
3,308,826 + -1.6
3,308,826 + -0.4
3,308,826 + -0.1
3,308,827 - -1.3
3,308,827 - +0.5
3,308,827 - -0.6
3,308,970 + LRK53_RS15150 0.27 +0.4
3,308,970 + LRK53_RS15150 0.27 +0.4
3,308,971 - LRK53_RS15150 0.27 +2.7
3,309,204 + LRK53_RS15150 0.57 +0.3
3,309,204 + LRK53_RS15150 0.57 -0.2
3,309,205 - LRK53_RS15150 0.57 -0.7
3,309,205 - LRK53_RS15150 0.57 +0.1
3,309,444 + LRK53_RS15150 0.87 +0.9
3,309,444 + LRK53_RS15150 0.87 -2.3
3,309,670 + LRK53_RS15155 0.10 -0.4
3,309,670 + LRK53_RS15155 0.10 -0.5
3,309,670 + LRK53_RS15155 0.10 +0.3
3,309,671 - LRK53_RS15155 0.10 +0.3
3,310,037 + LRK53_RS15155 0.60 +2.8
3,310,039 + LRK53_RS15155 0.60 -2.3
3,310,039 + LRK53_RS15155 0.60 +0.7
3,310,039 + LRK53_RS15155 0.60 -0.7
3,310,039 + LRK53_RS15155 0.60 -1.2
3,310,039 + LRK53_RS15155 0.60 -0.0
3,310,039 + LRK53_RS15155 0.60 -0.9
3,310,039 + LRK53_RS15155 0.60 -1.7
3,310,039 + LRK53_RS15155 0.60 -0.1
3,310,040 - LRK53_RS15155 0.60 -0.3
3,310,040 - LRK53_RS15155 0.60 +0.7
3,310,040 - LRK53_RS15155 0.60 -0.8
3,310,040 - LRK53_RS15155 0.60 -2.1
3,310,314 + +1.4
3,310,314 + -0.3
3,310,314 + -1.5
3,310,314 + -2.4
3,310,314 + -1.1
3,310,314 + +0.9
3,310,314 + +1.3
3,310,314 + +0.1
3,310,314 + +0.2
3,310,314 + +2.1
3,310,314 + -0.3
3,310,314 + -2.0
3,310,314 + +0.8
3,310,314 + +0.4
3,310,315 - -0.1
3,310,315 - +1.5
3,310,315 - +0.1
3,310,315 - -0.3
3,310,315 - -0.5
3,310,315 - +1.3
3,310,315 - -1.0
3,310,318 + -1.1
3,310,318 + -1.0
3,310,318 + -1.3
3,310,318 + +0.7
3,310,318 + -2.5
3,310,318 + -0.8
3,310,319 - -0.2
3,310,319 - -0.6
3,310,319 - -0.7
3,310,494 + -0.7
3,310,494 + +0.9
3,310,494 + -0.3
3,310,494 + +1.1
3,310,494 + -0.7
3,310,494 + -0.9
3,310,494 + -1.6
3,310,494 + -1.7
3,310,494 + +1.1
3,310,495 - +0.2
3,310,495 - -0.7
3,310,495 - -0.8
3,310,498 + -0.4
3,310,498 + -0.7
3,310,498 + +0.7
3,310,498 + -0.5
3,310,499 - -0.8
3,310,504 + -0.1
3,310,504 + +0.9
3,310,504 + +1.6
3,310,504 + -1.9
3,310,504 + -0.5
3,310,504 + -0.1
3,310,504 + +2.7
3,310,505 - -1.2
3,310,505 - -1.7

Or see this region's nucleotide sequence