Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15145

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS15140 and LRK53_RS15145 are separated by 197 nucleotidesLRK53_RS15145 and LRK53_RS15150 are separated by 152 nucleotidesLRK53_RS15150 and LRK53_RS15155 are separated by 49 nucleotides LRK53_RS15140: LRK53_RS15140 - flagellar basal body P-ring protein FlgI, at 3,306,643 to 3,307,734 _RS15140 LRK53_RS15145: LRK53_RS15145 - flagellar basal body L-ring protein FlgH, at 3,307,932 to 3,308,606 _RS15145 LRK53_RS15150: LRK53_RS15150 - flagellar basal-body rod protein FlgG, at 3,308,759 to 3,309,544 _RS15150 LRK53_RS15155: LRK53_RS15155 - flagellar basal-body rod protein FlgF, at 3,309,594 to 3,310,334 _RS15155 Position (kb) 3307 3308 3309Strain fitness (log2 ratio) -2 -1 0 1 2at 3306.979 kb on + strand, within LRK53_RS15140at 3306.979 kb on + strand, within LRK53_RS15140at 3306.980 kb on - strand, within LRK53_RS15140at 3306.980 kb on - strand, within LRK53_RS15140at 3307.118 kb on + strand, within LRK53_RS15140at 3307.119 kb on - strand, within LRK53_RS15140at 3307.119 kb on - strand, within LRK53_RS15140at 3307.119 kb on - strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.266 kb on + strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.267 kb on - strand, within LRK53_RS15140at 3307.343 kb on + strand, within LRK53_RS15140at 3307.343 kb on + strand, within LRK53_RS15140at 3307.923 kb on + strandat 3307.923 kb on + strandat 3307.923 kb on + strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3307.924 kb on - strandat 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.014 kb on + strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.015 kb on - strand, within LRK53_RS15145at 3308.310 kb on - strand, within LRK53_RS15145at 3308.461 kb on + strand, within LRK53_RS15145at 3308.461 kb on + strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.462 kb on - strand, within LRK53_RS15145at 3308.826 kb on + strandat 3308.826 kb on + strandat 3308.826 kb on + strandat 3308.827 kb on - strandat 3308.827 kb on - strandat 3308.827 kb on - strandat 3308.970 kb on + strand, within LRK53_RS15150at 3308.970 kb on + strand, within LRK53_RS15150at 3308.971 kb on - strand, within LRK53_RS15150at 3309.204 kb on + strand, within LRK53_RS15150at 3309.204 kb on + strand, within LRK53_RS15150at 3309.205 kb on - strand, within LRK53_RS15150at 3309.205 kb on - strand, within LRK53_RS15150at 3309.444 kb on + strand, within LRK53_RS15150at 3309.444 kb on + strand, within LRK53_RS15150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
3,306,979 + LRK53_RS15140 0.31 -0.7
3,306,979 + LRK53_RS15140 0.31 -1.3
3,306,980 - LRK53_RS15140 0.31 +0.3
3,306,980 - LRK53_RS15140 0.31 +0.1
3,307,118 + LRK53_RS15140 0.43 -0.9
3,307,119 - LRK53_RS15140 0.44 -1.6
3,307,119 - LRK53_RS15140 0.44 -1.6
3,307,119 - LRK53_RS15140 0.44 +0.5
3,307,266 + LRK53_RS15140 0.57 -0.3
3,307,266 + LRK53_RS15140 0.57 -1.9
3,307,266 + LRK53_RS15140 0.57 +0.6
3,307,266 + LRK53_RS15140 0.57 +0.1
3,307,266 + LRK53_RS15140 0.57 +0.1
3,307,266 + LRK53_RS15140 0.57 -0.7
3,307,266 + LRK53_RS15140 0.57 +1.2
3,307,266 + LRK53_RS15140 0.57 -1.3
3,307,267 - LRK53_RS15140 0.57 -0.0
3,307,267 - LRK53_RS15140 0.57 -2.6
3,307,267 - LRK53_RS15140 0.57 -2.0
3,307,267 - LRK53_RS15140 0.57 +1.4
3,307,267 - LRK53_RS15140 0.57 -0.7
3,307,267 - LRK53_RS15140 0.57 -0.5
3,307,267 - LRK53_RS15140 0.57 +0.1
3,307,343 + LRK53_RS15140 0.64 +0.7
3,307,343 + LRK53_RS15140 0.64 -0.9
3,307,923 + -0.3
3,307,923 + +2.4
3,307,923 + +0.9
3,307,924 - -0.9
3,307,924 - -2.2
3,307,924 - -1.7
3,307,924 - +2.1
3,307,924 - +1.1
3,308,014 + LRK53_RS15145 0.12 -0.1
3,308,014 + LRK53_RS15145 0.12 -2.7
3,308,014 + LRK53_RS15145 0.12 +0.1
3,308,014 + LRK53_RS15145 0.12 -0.5
3,308,015 - LRK53_RS15145 0.12 -0.5
3,308,015 - LRK53_RS15145 0.12 -0.9
3,308,015 - LRK53_RS15145 0.12 -0.1
3,308,310 - LRK53_RS15145 0.56 -1.7
3,308,461 + LRK53_RS15145 0.78 +1.3
3,308,461 + LRK53_RS15145 0.78 +0.3
3,308,462 - LRK53_RS15145 0.79 -2.0
3,308,462 - LRK53_RS15145 0.79 -2.4
3,308,462 - LRK53_RS15145 0.79 -1.5
3,308,462 - LRK53_RS15145 0.79 +0.3
3,308,826 + -1.6
3,308,826 + -0.4
3,308,826 + -0.1
3,308,827 - -1.3
3,308,827 - +0.5
3,308,827 - -0.6
3,308,970 + LRK53_RS15150 0.27 +0.4
3,308,970 + LRK53_RS15150 0.27 +0.4
3,308,971 - LRK53_RS15150 0.27 +2.7
3,309,204 + LRK53_RS15150 0.57 +0.3
3,309,204 + LRK53_RS15150 0.57 -0.2
3,309,205 - LRK53_RS15150 0.57 -0.7
3,309,205 - LRK53_RS15150 0.57 +0.1
3,309,444 + LRK53_RS15150 0.87 +0.9
3,309,444 + LRK53_RS15150 0.87 -2.3

Or see this region's nucleotide sequence