Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15140 and LRK53_RS15145 are separated by 197 nucleotides LRK53_RS15145 and LRK53_RS15150 are separated by 152 nucleotides LRK53_RS15150 and LRK53_RS15155 are separated by 49 nucleotides
LRK53_RS15140: LRK53_RS15140 - flagellar basal body P-ring protein FlgI, at 3,306,643 to 3,307,734
_RS15140
LRK53_RS15145: LRK53_RS15145 - flagellar basal body L-ring protein FlgH, at 3,307,932 to 3,308,606
_RS15145
LRK53_RS15150: LRK53_RS15150 - flagellar basal-body rod protein FlgG, at 3,308,759 to 3,309,544
_RS15150
LRK53_RS15155: LRK53_RS15155 - flagellar basal-body rod protein FlgF, at 3,309,594 to 3,310,334
_RS15155
Position (kb)
3307
3308
3309 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3306.979 kb on + strand, within LRK53_RS15140 at 3306.979 kb on + strand, within LRK53_RS15140 at 3306.980 kb on - strand, within LRK53_RS15140 at 3306.980 kb on - strand, within LRK53_RS15140 at 3307.118 kb on + strand, within LRK53_RS15140 at 3307.119 kb on - strand, within LRK53_RS15140 at 3307.119 kb on - strand, within LRK53_RS15140 at 3307.119 kb on - strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.266 kb on + strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.267 kb on - strand, within LRK53_RS15140 at 3307.343 kb on + strand, within LRK53_RS15140 at 3307.343 kb on + strand, within LRK53_RS15140 at 3307.923 kb on + strand at 3307.923 kb on + strand at 3307.923 kb on + strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3307.924 kb on - strand at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.014 kb on + strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.015 kb on - strand, within LRK53_RS15145 at 3308.310 kb on - strand, within LRK53_RS15145 at 3308.461 kb on + strand, within LRK53_RS15145 at 3308.461 kb on + strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.462 kb on - strand, within LRK53_RS15145 at 3308.826 kb on + strand at 3308.826 kb on + strand at 3308.826 kb on + strand at 3308.827 kb on - strand at 3308.827 kb on - strand at 3308.827 kb on - strand at 3308.970 kb on + strand, within LRK53_RS15150 at 3308.970 kb on + strand, within LRK53_RS15150 at 3308.971 kb on - strand, within LRK53_RS15150 at 3309.204 kb on + strand, within LRK53_RS15150 at 3309.204 kb on + strand, within LRK53_RS15150 at 3309.205 kb on - strand, within LRK53_RS15150 at 3309.205 kb on - strand, within LRK53_RS15150 at 3309.444 kb on + strand, within LRK53_RS15150 at 3309.444 kb on + strand, within LRK53_RS15150
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,306,979 + LRK53_RS15140 0.31 -0.7 3,306,979 + LRK53_RS15140 0.31 -1.3 3,306,980 - LRK53_RS15140 0.31 +0.3 3,306,980 - LRK53_RS15140 0.31 +0.1 3,307,118 + LRK53_RS15140 0.43 -0.9 3,307,119 - LRK53_RS15140 0.44 -1.6 3,307,119 - LRK53_RS15140 0.44 -1.6 3,307,119 - LRK53_RS15140 0.44 +0.5 3,307,266 + LRK53_RS15140 0.57 -0.3 3,307,266 + LRK53_RS15140 0.57 -1.9 3,307,266 + LRK53_RS15140 0.57 +0.6 3,307,266 + LRK53_RS15140 0.57 +0.1 3,307,266 + LRK53_RS15140 0.57 +0.1 3,307,266 + LRK53_RS15140 0.57 -0.7 3,307,266 + LRK53_RS15140 0.57 +1.2 3,307,266 + LRK53_RS15140 0.57 -1.3 3,307,267 - LRK53_RS15140 0.57 -0.0 3,307,267 - LRK53_RS15140 0.57 -2.6 3,307,267 - LRK53_RS15140 0.57 -2.0 3,307,267 - LRK53_RS15140 0.57 +1.4 3,307,267 - LRK53_RS15140 0.57 -0.7 3,307,267 - LRK53_RS15140 0.57 -0.5 3,307,267 - LRK53_RS15140 0.57 +0.1 3,307,343 + LRK53_RS15140 0.64 +0.7 3,307,343 + LRK53_RS15140 0.64 -0.9 3,307,923 + -0.3 3,307,923 + +2.4 3,307,923 + +0.9 3,307,924 - -0.9 3,307,924 - -2.2 3,307,924 - -1.7 3,307,924 - +2.1 3,307,924 - +1.1 3,308,014 + LRK53_RS15145 0.12 -0.1 3,308,014 + LRK53_RS15145 0.12 -2.7 3,308,014 + LRK53_RS15145 0.12 +0.1 3,308,014 + LRK53_RS15145 0.12 -0.5 3,308,015 - LRK53_RS15145 0.12 -0.5 3,308,015 - LRK53_RS15145 0.12 -0.9 3,308,015 - LRK53_RS15145 0.12 -0.1 3,308,310 - LRK53_RS15145 0.56 -1.7 3,308,461 + LRK53_RS15145 0.78 +1.3 3,308,461 + LRK53_RS15145 0.78 +0.3 3,308,462 - LRK53_RS15145 0.79 -2.0 3,308,462 - LRK53_RS15145 0.79 -2.4 3,308,462 - LRK53_RS15145 0.79 -1.5 3,308,462 - LRK53_RS15145 0.79 +0.3 3,308,826 + -1.6 3,308,826 + -0.4 3,308,826 + -0.1 3,308,827 - -1.3 3,308,827 - +0.5 3,308,827 - -0.6 3,308,970 + LRK53_RS15150 0.27 +0.4 3,308,970 + LRK53_RS15150 0.27 +0.4 3,308,971 - LRK53_RS15150 0.27 +2.7 3,309,204 + LRK53_RS15150 0.57 +0.3 3,309,204 + LRK53_RS15150 0.57 -0.2 3,309,205 - LRK53_RS15150 0.57 -0.7 3,309,205 - LRK53_RS15150 0.57 +0.1 3,309,444 + LRK53_RS15150 0.87 +0.9 3,309,444 + LRK53_RS15150 0.87 -2.3
Or see this region's nucleotide sequence