Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15035

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15030 and LRK53_RS15035 overlap by 4 nucleotidesLRK53_RS15035 and LRK53_RS15040 are separated by 7 nucleotidesLRK53_RS15040 and LRK53_RS15045 overlap by 4 nucleotides LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662 _RS15030 LRK53_RS15035: LRK53_RS15035 - flagellar biosynthetic protein FliO, at 3,286,659 to 3,287,069 _RS15035 LRK53_RS15040: LRK53_RS15040 - flagellar motor switch protein FliN, at 3,287,077 to 3,287,424 _RS15040 LRK53_RS15045: LRK53_RS15045 - flagellar motor switch protein FliM, at 3,287,421 to 3,288,437 _RS15045 Position (kb) 3286 3287 3288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3285.716 kb on + strandat 3285.716 kb on + strandat 3285.887 kb on + strandat 3285.888 kb on - strandat 3285.923 kb on + strandat 3285.923 kb on + strandat 3285.923 kb on + strandat 3285.923 kb on + strandat 3285.923 kb on + strandat 3285.924 kb on - strandat 3285.924 kb on - strandat 3286.116 kb on + strand, within LRK53_RS15030at 3286.116 kb on + strand, within LRK53_RS15030at 3286.116 kb on + strand, within LRK53_RS15030at 3286.116 kb on + strand, within LRK53_RS15030at 3286.117 kb on - strand, within LRK53_RS15030at 3286.117 kb on - strand, within LRK53_RS15030at 3286.117 kb on - strand, within LRK53_RS15030at 3286.117 kb on - strand, within LRK53_RS15030at 3286.178 kb on + strand, within LRK53_RS15030at 3286.179 kb on - strand, within LRK53_RS15030at 3286.179 kb on - strand, within LRK53_RS15030at 3286.307 kb on + strand, within LRK53_RS15030at 3286.307 kb on + strand, within LRK53_RS15030at 3286.307 kb on + strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.308 kb on - strand, within LRK53_RS15030at 3286.328 kb on + strand, within LRK53_RS15030at 3286.746 kb on + strand, within LRK53_RS15035at 3286.756 kb on + strand, within LRK53_RS15035at 3286.757 kb on - strand, within LRK53_RS15035at 3287.049 kb on + strandat 3287.049 kb on + strandat 3287.524 kb on + strand, within LRK53_RS15045at 3287.557 kb on + strand, within LRK53_RS15045at 3287.557 kb on + strand, within LRK53_RS15045at 3287.558 kb on - strand, within LRK53_RS15045at 3287.664 kb on + strand, within LRK53_RS15045at 3287.664 kb on + strand, within LRK53_RS15045at 3287.665 kb on - strand, within LRK53_RS15045at 3287.665 kb on - strand, within LRK53_RS15045at 3287.779 kb on + strand, within LRK53_RS15045at 3287.780 kb on - strand, within LRK53_RS15045at 3287.902 kb on + strand, within LRK53_RS15045

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,285,716 + -3.3
3,285,716 + +0.1
3,285,887 + -0.4
3,285,888 - -0.7
3,285,923 + -0.5
3,285,923 + -2.6
3,285,923 + +0.3
3,285,923 + +0.9
3,285,923 + +0.2
3,285,924 - +1.4
3,285,924 - -2.2
3,286,116 + LRK53_RS15030 0.27 -0.5
3,286,116 + LRK53_RS15030 0.27 -0.8
3,286,116 + LRK53_RS15030 0.27 -0.4
3,286,116 + LRK53_RS15030 0.27 +1.8
3,286,117 - LRK53_RS15030 0.27 -0.7
3,286,117 - LRK53_RS15030 0.27 +0.0
3,286,117 - LRK53_RS15030 0.27 +0.1
3,286,117 - LRK53_RS15030 0.27 +0.1
3,286,178 + LRK53_RS15030 0.35 +1.6
3,286,179 - LRK53_RS15030 0.35 -0.5
3,286,179 - LRK53_RS15030 0.35 -1.4
3,286,307 + LRK53_RS15030 0.52 +1.0
3,286,307 + LRK53_RS15030 0.52 +1.1
3,286,307 + LRK53_RS15030 0.52 -0.4
3,286,308 - LRK53_RS15030 0.52 +0.0
3,286,308 - LRK53_RS15030 0.52 +0.7
3,286,308 - LRK53_RS15030 0.52 -1.8
3,286,308 - LRK53_RS15030 0.52 +1.0
3,286,308 - LRK53_RS15030 0.52 -1.9
3,286,308 - LRK53_RS15030 0.52 -0.4
3,286,308 - LRK53_RS15030 0.52 +0.5
3,286,308 - LRK53_RS15030 0.52 -1.4
3,286,328 + LRK53_RS15030 0.55 -0.2
3,286,746 + LRK53_RS15035 0.21 -1.0
3,286,756 + LRK53_RS15035 0.24 +0.1
3,286,757 - LRK53_RS15035 0.24 -0.8
3,287,049 + +0.0
3,287,049 + -0.8
3,287,524 + LRK53_RS15045 0.10 +0.9
3,287,557 + LRK53_RS15045 0.13 -0.8
3,287,557 + LRK53_RS15045 0.13 -1.7
3,287,558 - LRK53_RS15045 0.13 -1.3
3,287,664 + LRK53_RS15045 0.24 -0.9
3,287,664 + LRK53_RS15045 0.24 -0.6
3,287,665 - LRK53_RS15045 0.24 -2.4
3,287,665 - LRK53_RS15045 0.24 -1.7
3,287,779 + LRK53_RS15045 0.35 +1.1
3,287,780 - LRK53_RS15045 0.35 +0.1
3,287,902 + LRK53_RS15045 0.47 -1.4

Or see this region's nucleotide sequence