Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15030 and LRK53_RS15035 overlap by 4 nucleotides LRK53_RS15035 and LRK53_RS15040 are separated by 7 nucleotides LRK53_RS15040 and LRK53_RS15045 overlap by 4 nucleotides
LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662
_RS15030
LRK53_RS15035: LRK53_RS15035 - flagellar biosynthetic protein FliO, at 3,286,659 to 3,287,069
_RS15035
LRK53_RS15040: LRK53_RS15040 - flagellar motor switch protein FliN, at 3,287,077 to 3,287,424
_RS15040
LRK53_RS15045: LRK53_RS15045 - flagellar motor switch protein FliM, at 3,287,421 to 3,288,437
_RS15045
Position (kb)
3286
3287
3288 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3285.716 kb on + strand at 3285.716 kb on + strand at 3285.887 kb on + strand at 3285.888 kb on - strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.924 kb on - strand at 3285.924 kb on - strand at 3286.116 kb on + strand, within LRK53_RS15030 at 3286.116 kb on + strand, within LRK53_RS15030 at 3286.116 kb on + strand, within LRK53_RS15030 at 3286.116 kb on + strand, within LRK53_RS15030 at 3286.117 kb on - strand, within LRK53_RS15030 at 3286.117 kb on - strand, within LRK53_RS15030 at 3286.117 kb on - strand, within LRK53_RS15030 at 3286.117 kb on - strand, within LRK53_RS15030 at 3286.178 kb on + strand, within LRK53_RS15030 at 3286.179 kb on - strand, within LRK53_RS15030 at 3286.179 kb on - strand, within LRK53_RS15030 at 3286.307 kb on + strand, within LRK53_RS15030 at 3286.307 kb on + strand, within LRK53_RS15030 at 3286.307 kb on + strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.308 kb on - strand, within LRK53_RS15030 at 3286.328 kb on + strand, within LRK53_RS15030 at 3286.746 kb on + strand, within LRK53_RS15035 at 3286.756 kb on + strand, within LRK53_RS15035 at 3286.757 kb on - strand, within LRK53_RS15035 at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.524 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.558 kb on - strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.779 kb on + strand, within LRK53_RS15045 at 3287.780 kb on - strand, within LRK53_RS15045 at 3287.902 kb on + strand, within LRK53_RS15045
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,285,716 + -3.3 3,285,716 + +0.1 3,285,887 + -0.4 3,285,888 - -0.7 3,285,923 + -0.5 3,285,923 + -2.6 3,285,923 + +0.3 3,285,923 + +0.9 3,285,923 + +0.2 3,285,924 - +1.4 3,285,924 - -2.2 3,286,116 + LRK53_RS15030 0.27 -0.5 3,286,116 + LRK53_RS15030 0.27 -0.8 3,286,116 + LRK53_RS15030 0.27 -0.4 3,286,116 + LRK53_RS15030 0.27 +1.8 3,286,117 - LRK53_RS15030 0.27 -0.7 3,286,117 - LRK53_RS15030 0.27 +0.0 3,286,117 - LRK53_RS15030 0.27 +0.1 3,286,117 - LRK53_RS15030 0.27 +0.1 3,286,178 + LRK53_RS15030 0.35 +1.6 3,286,179 - LRK53_RS15030 0.35 -0.5 3,286,179 - LRK53_RS15030 0.35 -1.4 3,286,307 + LRK53_RS15030 0.52 +1.0 3,286,307 + LRK53_RS15030 0.52 +1.1 3,286,307 + LRK53_RS15030 0.52 -0.4 3,286,308 - LRK53_RS15030 0.52 +0.0 3,286,308 - LRK53_RS15030 0.52 +0.7 3,286,308 - LRK53_RS15030 0.52 -1.8 3,286,308 - LRK53_RS15030 0.52 +1.0 3,286,308 - LRK53_RS15030 0.52 -1.9 3,286,308 - LRK53_RS15030 0.52 -0.4 3,286,308 - LRK53_RS15030 0.52 +0.5 3,286,308 - LRK53_RS15030 0.52 -1.4 3,286,328 + LRK53_RS15030 0.55 -0.2 3,286,746 + LRK53_RS15035 0.21 -1.0 3,286,756 + LRK53_RS15035 0.24 +0.1 3,286,757 - LRK53_RS15035 0.24 -0.8 3,287,049 + +0.0 3,287,049 + -0.8 3,287,524 + LRK53_RS15045 0.10 +0.9 3,287,557 + LRK53_RS15045 0.13 -0.8 3,287,557 + LRK53_RS15045 0.13 -1.7 3,287,558 - LRK53_RS15045 0.13 -1.3 3,287,664 + LRK53_RS15045 0.24 -0.9 3,287,664 + LRK53_RS15045 0.24 -0.6 3,287,665 - LRK53_RS15045 0.24 -2.4 3,287,665 - LRK53_RS15045 0.24 -1.7 3,287,779 + LRK53_RS15045 0.35 +1.1 3,287,780 - LRK53_RS15045 0.35 +0.1 3,287,902 + LRK53_RS15045 0.47 -1.4
Or see this region's nucleotide sequence