Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15015 and LRK53_RS15020 are separated by 3 nucleotides LRK53_RS15020 and LRK53_RS15025 overlap by 4 nucleotides LRK53_RS15025 and LRK53_RS15030 are separated by 955 nucleotides
LRK53_RS15015: LRK53_RS15015 - flagellar biosynthesis protein FlhB, at 3,282,784 to 3,283,920
_RS15015
LRK53_RS15020: LRK53_RS15020 - flagellar biosynthetic protein FliR, at 3,283,924 to 3,284,694
_RS15020
LRK53_RS15025: LRK53_RS15025 - flagellar biosynthesis protein FliQ, at 3,284,691 to 3,284,960
_RS15025
LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662
_RS15030
Position (kb) 3284
3285 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3283.721 kb on + strand, within LRK53_RS15015 at 3283.721 kb on + strand, within LRK53_RS15015 at 3284.312 kb on + strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.313 kb on - strand, within LRK53_RS15020 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.734 kb on + strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.735 kb on - strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.917 kb on + strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3284.918 kb on - strand, within LRK53_RS15025 at 3285.023 kb on + strand at 3285.024 kb on - strand at 3285.716 kb on + strand at 3285.716 kb on + strand at 3285.887 kb on + strand at 3285.888 kb on - strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.923 kb on + strand at 3285.924 kb on - strand at 3285.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,283,721 + LRK53_RS15015 0.82 -1.2 3,283,721 + LRK53_RS15015 0.82 +0.9 3,284,312 + LRK53_RS15020 0.50 +0.9 3,284,313 - LRK53_RS15020 0.50 +0.5 3,284,313 - LRK53_RS15020 0.50 -0.8 3,284,313 - LRK53_RS15020 0.50 +0.2 3,284,313 - LRK53_RS15020 0.50 +0.7 3,284,313 - LRK53_RS15020 0.50 +0.0 3,284,734 + LRK53_RS15025 0.16 +0.0 3,284,734 + LRK53_RS15025 0.16 -1.0 3,284,734 + LRK53_RS15025 0.16 +0.1 3,284,734 + LRK53_RS15025 0.16 +0.5 3,284,734 + LRK53_RS15025 0.16 -1.2 3,284,734 + LRK53_RS15025 0.16 -2.3 3,284,734 + LRK53_RS15025 0.16 -1.2 3,284,734 + LRK53_RS15025 0.16 +0.1 3,284,734 + LRK53_RS15025 0.16 +0.7 3,284,734 + LRK53_RS15025 0.16 -2.6 3,284,735 - LRK53_RS15025 0.16 +0.5 3,284,735 - LRK53_RS15025 0.16 +0.4 3,284,735 - LRK53_RS15025 0.16 +1.3 3,284,735 - LRK53_RS15025 0.16 +2.1 3,284,735 - LRK53_RS15025 0.16 -1.3 3,284,735 - LRK53_RS15025 0.16 +1.5 3,284,735 - LRK53_RS15025 0.16 +1.1 3,284,735 - LRK53_RS15025 0.16 -0.5 3,284,917 + LRK53_RS15025 0.84 +0.1 3,284,917 + LRK53_RS15025 0.84 +1.1 3,284,917 + LRK53_RS15025 0.84 -0.8 3,284,917 + LRK53_RS15025 0.84 -1.3 3,284,917 + LRK53_RS15025 0.84 -0.1 3,284,917 + LRK53_RS15025 0.84 +0.7 3,284,917 + LRK53_RS15025 0.84 -1.1 3,284,918 - LRK53_RS15025 0.84 -0.9 3,284,918 - LRK53_RS15025 0.84 +0.7 3,284,918 - LRK53_RS15025 0.84 -1.9 3,284,918 - LRK53_RS15025 0.84 +1.0 3,284,918 - LRK53_RS15025 0.84 -0.8 3,285,023 + -0.5 3,285,024 - -0.2 3,285,716 + -3.3 3,285,716 + +0.1 3,285,887 + -0.4 3,285,888 - -0.7 3,285,923 + -0.5 3,285,923 + -2.6 3,285,923 + +0.3 3,285,923 + +0.9 3,285,923 + +0.2 3,285,924 - +1.4 3,285,924 - -2.2
Or see this region's nucleotide sequence