Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14865

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14855 and LRK53_RS14860 are separated by 27 nucleotidesLRK53_RS14860 and LRK53_RS14865 are separated by 202 nucleotidesLRK53_RS14865 and LRK53_RS14870 are separated by 6 nucleotides LRK53_RS14855: LRK53_RS14855 - PhoH family protein, at 3,251,894 to 3,252,916 _RS14855 LRK53_RS14860: LRK53_RS14860 - rRNA maturation RNase YbeY, at 3,252,944 to 3,253,441 _RS14860 LRK53_RS14865: LRK53_RS14865 - CBS domain-containing protein, at 3,253,644 to 3,254,483 _RS14865 LRK53_RS14870: LRK53_RS14870 - DUF4105 domain-containing protein, at 3,254,490 to 3,255,695 _RS14870 Position (kb) 3253 3254 3255Strain fitness (log2 ratio) -2 -1 0 1at 3252.718 kb on + strand, within LRK53_RS14855at 3252.839 kb on + strandat 3252.840 kb on - strandat 3254.007 kb on + strand, within LRK53_RS14865at 3254.007 kb on + strand, within LRK53_RS14865at 3254.007 kb on + strand, within LRK53_RS14865at 3254.145 kb on + strand, within LRK53_RS14865at 3254.145 kb on + strand, within LRK53_RS14865at 3254.340 kb on + strand, within LRK53_RS14865at 3254.340 kb on + strand, within LRK53_RS14865at 3254.340 kb on + strand, within LRK53_RS14865at 3254.340 kb on + strand, within LRK53_RS14865at 3254.418 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strandat 3254.481 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,252,718 + LRK53_RS14855 0.81 +0.3
3,252,839 + -0.7
3,252,840 - -0.2
3,254,007 + LRK53_RS14865 0.43 -1.7
3,254,007 + LRK53_RS14865 0.43 -0.9
3,254,007 + LRK53_RS14865 0.43 -0.9
3,254,145 + LRK53_RS14865 0.60 -2.3
3,254,145 + LRK53_RS14865 0.60 -0.2
3,254,340 + LRK53_RS14865 0.83 +0.1
3,254,340 + LRK53_RS14865 0.83 -0.3
3,254,340 + LRK53_RS14865 0.83 -0.9
3,254,340 + LRK53_RS14865 0.83 +0.1
3,254,418 + +0.1
3,254,481 + -1.0
3,254,481 + +0.3
3,254,481 + +0.7
3,254,481 + -1.6
3,254,481 + -0.2
3,254,481 + +0.2
3,254,481 + -1.4
3,254,481 + -0.8
3,254,481 + -0.4

Or see this region's nucleotide sequence