Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14710 and LRK53_RS14715 are separated by 191 nucleotides LRK53_RS14715 and LRK53_RS14720 overlap by 4 nucleotides
LRK53_RS14710: LRK53_RS14710 - quinolinate synthase NadA, at 3,221,011 to 3,222,036
_RS14710
LRK53_RS14715: LRK53_RS14715 - zinc-binding protein, at 3,222,228 to 3,222,611
_RS14715
LRK53_RS14720: LRK53_RS14720 - hypothetical protein, at 3,222,608 to 3,223,861
_RS14720
Position (kb)
3222
3223 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3221.591 kb on + strand, within LRK53_RS14710 at 3221.591 kb on + strand, within LRK53_RS14710 at 3221.592 kb on - strand, within LRK53_RS14710 at 3221.592 kb on - strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.852 kb on + strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.853 kb on - strand, within LRK53_RS14710 at 3221.956 kb on + strand at 3221.956 kb on + strand at 3221.957 kb on - strand at 3221.978 kb on + strand at 3221.978 kb on + strand at 3221.978 kb on + strand at 3221.978 kb on + strand at 3221.978 kb on + strand at 3221.978 kb on + strand at 3221.979 kb on - strand at 3221.979 kb on - strand at 3221.979 kb on - strand at 3221.979 kb on - strand at 3222.120 kb on + strand at 3222.121 kb on - strand at 3222.121 kb on - strand at 3222.121 kb on - strand at 3222.121 kb on - strand at 3222.286 kb on + strand, within LRK53_RS14715 at 3222.286 kb on + strand, within LRK53_RS14715 at 3222.286 kb on + strand, within LRK53_RS14715 at 3222.287 kb on - strand, within LRK53_RS14715 at 3222.287 kb on - strand, within LRK53_RS14715 at 3222.586 kb on + strand at 3222.586 kb on + strand at 3222.586 kb on + strand at 3222.586 kb on + strand at 3222.586 kb on + strand at 3222.587 kb on - strand at 3222.587 kb on - strand at 3222.587 kb on - strand at 3222.587 kb on - strand at 3222.955 kb on + strand, within LRK53_RS14720 at 3222.955 kb on + strand, within LRK53_RS14720 at 3222.955 kb on + strand, within LRK53_RS14720 at 3222.956 kb on - strand, within LRK53_RS14720 at 3222.956 kb on - strand, within LRK53_RS14720 at 3222.956 kb on - strand, within LRK53_RS14720 at 3222.956 kb on - strand, within LRK53_RS14720 at 3222.956 kb on - strand, within LRK53_RS14720
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,221,591 + LRK53_RS14710 0.57 -0.9 3,221,591 + LRK53_RS14710 0.57 -1.2 3,221,592 - LRK53_RS14710 0.57 +0.4 3,221,592 - LRK53_RS14710 0.57 +1.5 3,221,852 + LRK53_RS14710 0.82 -0.8 3,221,852 + LRK53_RS14710 0.82 +0.5 3,221,852 + LRK53_RS14710 0.82 +0.7 3,221,852 + LRK53_RS14710 0.82 +1.0 3,221,852 + LRK53_RS14710 0.82 -0.5 3,221,852 + LRK53_RS14710 0.82 -1.3 3,221,852 + LRK53_RS14710 0.82 +1.6 3,221,852 + LRK53_RS14710 0.82 +1.1 3,221,853 - LRK53_RS14710 0.82 -1.6 3,221,853 - LRK53_RS14710 0.82 +0.7 3,221,853 - LRK53_RS14710 0.82 -1.3 3,221,853 - LRK53_RS14710 0.82 -1.0 3,221,853 - LRK53_RS14710 0.82 +0.8 3,221,853 - LRK53_RS14710 0.82 +0.1 3,221,853 - LRK53_RS14710 0.82 -0.6 3,221,956 + -0.0 3,221,956 + -1.5 3,221,957 - +3.0 3,221,978 + -0.9 3,221,978 + -1.4 3,221,978 + -0.4 3,221,978 + +1.2 3,221,978 + +1.8 3,221,978 + -0.4 3,221,979 - -2.5 3,221,979 - -0.2 3,221,979 - -0.7 3,221,979 - +1.1 3,222,120 + -2.0 3,222,121 - -1.5 3,222,121 - -0.1 3,222,121 - -0.5 3,222,121 - +0.1 3,222,286 + LRK53_RS14715 0.15 -0.4 3,222,286 + LRK53_RS14715 0.15 +2.2 3,222,286 + LRK53_RS14715 0.15 -0.1 3,222,287 - LRK53_RS14715 0.15 +0.7 3,222,287 - LRK53_RS14715 0.15 -0.2 3,222,586 + -2.2 3,222,586 + -1.3 3,222,586 + -1.2 3,222,586 + -0.2 3,222,586 + +1.1 3,222,587 - -0.1 3,222,587 - -2.9 3,222,587 - -1.4 3,222,587 - +0.7 3,222,955 + LRK53_RS14720 0.28 -0.7 3,222,955 + LRK53_RS14720 0.28 -0.5 3,222,955 + LRK53_RS14720 0.28 -0.2 3,222,956 - LRK53_RS14720 0.28 +0.2 3,222,956 - LRK53_RS14720 0.28 -1.0 3,222,956 - LRK53_RS14720 0.28 -0.2 3,222,956 - LRK53_RS14720 0.28 -1.3 3,222,956 - LRK53_RS14720 0.28 -0.7
Or see this region's nucleotide sequence