Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14715

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14710 and LRK53_RS14715 are separated by 191 nucleotidesLRK53_RS14715 and LRK53_RS14720 overlap by 4 nucleotides LRK53_RS14710: LRK53_RS14710 - quinolinate synthase NadA, at 3,221,011 to 3,222,036 _RS14710 LRK53_RS14715: LRK53_RS14715 - zinc-binding protein, at 3,222,228 to 3,222,611 _RS14715 LRK53_RS14720: LRK53_RS14720 - hypothetical protein, at 3,222,608 to 3,223,861 _RS14720 Position (kb) 3222 3223Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3221.591 kb on + strand, within LRK53_RS14710at 3221.591 kb on + strand, within LRK53_RS14710at 3221.592 kb on - strand, within LRK53_RS14710at 3221.592 kb on - strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.852 kb on + strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.853 kb on - strand, within LRK53_RS14710at 3221.956 kb on + strandat 3221.956 kb on + strandat 3221.957 kb on - strandat 3221.978 kb on + strandat 3221.978 kb on + strandat 3221.978 kb on + strandat 3221.978 kb on + strandat 3221.978 kb on + strandat 3221.978 kb on + strandat 3221.979 kb on - strandat 3221.979 kb on - strandat 3221.979 kb on - strandat 3221.979 kb on - strandat 3222.120 kb on + strandat 3222.121 kb on - strandat 3222.121 kb on - strandat 3222.121 kb on - strandat 3222.121 kb on - strandat 3222.286 kb on + strand, within LRK53_RS14715at 3222.286 kb on + strand, within LRK53_RS14715at 3222.286 kb on + strand, within LRK53_RS14715at 3222.287 kb on - strand, within LRK53_RS14715at 3222.287 kb on - strand, within LRK53_RS14715at 3222.586 kb on + strandat 3222.586 kb on + strandat 3222.586 kb on + strandat 3222.586 kb on + strandat 3222.586 kb on + strandat 3222.587 kb on - strandat 3222.587 kb on - strandat 3222.587 kb on - strandat 3222.587 kb on - strandat 3222.955 kb on + strand, within LRK53_RS14720at 3222.955 kb on + strand, within LRK53_RS14720at 3222.955 kb on + strand, within LRK53_RS14720at 3222.956 kb on - strand, within LRK53_RS14720at 3222.956 kb on - strand, within LRK53_RS14720at 3222.956 kb on - strand, within LRK53_RS14720at 3222.956 kb on - strand, within LRK53_RS14720at 3222.956 kb on - strand, within LRK53_RS14720

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,221,591 + LRK53_RS14710 0.57 -0.9
3,221,591 + LRK53_RS14710 0.57 -1.2
3,221,592 - LRK53_RS14710 0.57 +0.4
3,221,592 - LRK53_RS14710 0.57 +1.5
3,221,852 + LRK53_RS14710 0.82 -0.8
3,221,852 + LRK53_RS14710 0.82 +0.5
3,221,852 + LRK53_RS14710 0.82 +0.7
3,221,852 + LRK53_RS14710 0.82 +1.0
3,221,852 + LRK53_RS14710 0.82 -0.5
3,221,852 + LRK53_RS14710 0.82 -1.3
3,221,852 + LRK53_RS14710 0.82 +1.6
3,221,852 + LRK53_RS14710 0.82 +1.1
3,221,853 - LRK53_RS14710 0.82 -1.6
3,221,853 - LRK53_RS14710 0.82 +0.7
3,221,853 - LRK53_RS14710 0.82 -1.3
3,221,853 - LRK53_RS14710 0.82 -1.0
3,221,853 - LRK53_RS14710 0.82 +0.8
3,221,853 - LRK53_RS14710 0.82 +0.1
3,221,853 - LRK53_RS14710 0.82 -0.6
3,221,956 + -0.0
3,221,956 + -1.5
3,221,957 - +3.0
3,221,978 + -0.9
3,221,978 + -1.4
3,221,978 + -0.4
3,221,978 + +1.2
3,221,978 + +1.8
3,221,978 + -0.4
3,221,979 - -2.5
3,221,979 - -0.2
3,221,979 - -0.7
3,221,979 - +1.1
3,222,120 + -2.0
3,222,121 - -1.5
3,222,121 - -0.1
3,222,121 - -0.5
3,222,121 - +0.1
3,222,286 + LRK53_RS14715 0.15 -0.4
3,222,286 + LRK53_RS14715 0.15 +2.2
3,222,286 + LRK53_RS14715 0.15 -0.1
3,222,287 - LRK53_RS14715 0.15 +0.7
3,222,287 - LRK53_RS14715 0.15 -0.2
3,222,586 + -2.2
3,222,586 + -1.3
3,222,586 + -1.2
3,222,586 + -0.2
3,222,586 + +1.1
3,222,587 - -0.1
3,222,587 - -2.9
3,222,587 - -1.4
3,222,587 - +0.7
3,222,955 + LRK53_RS14720 0.28 -0.7
3,222,955 + LRK53_RS14720 0.28 -0.5
3,222,955 + LRK53_RS14720 0.28 -0.2
3,222,956 - LRK53_RS14720 0.28 +0.2
3,222,956 - LRK53_RS14720 0.28 -1.0
3,222,956 - LRK53_RS14720 0.28 -0.2
3,222,956 - LRK53_RS14720 0.28 -1.3
3,222,956 - LRK53_RS14720 0.28 -0.7

Or see this region's nucleotide sequence