Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14565

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14555 and LRK53_RS14560 are separated by 34 nucleotidesLRK53_RS14560 and LRK53_RS14565 are separated by 14 nucleotidesLRK53_RS14565 and LRK53_RS14570 are separated by 236 nucleotides LRK53_RS14555: LRK53_RS14555 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 3,189,116 to 3,189,922 _RS14555 LRK53_RS14560: LRK53_RS14560 - hypothetical protein, at 3,189,957 to 3,190,262 _RS14560 LRK53_RS14565: LRK53_RS14565 - hypothetical protein, at 3,190,277 to 3,190,780 _RS14565 LRK53_RS14570: LRK53_RS14570 - molybdate ABC transporter substrate-binding protein, at 3,191,017 to 3,191,883 _RS14570 Position (kb) 3190 3191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3190.341 kb on + strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.342 kb on - strand, within LRK53_RS14565at 3190.351 kb on - strand, within LRK53_RS14565at 3190.351 kb on - strand, within LRK53_RS14565at 3190.372 kb on + strand, within LRK53_RS14565at 3190.373 kb on - strand, within LRK53_RS14565at 3190.379 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.497 kb on + strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.498 kb on - strand, within LRK53_RS14565at 3190.566 kb on + strand, within LRK53_RS14565at 3190.593 kb on + strand, within LRK53_RS14565at 3190.594 kb on - strand, within LRK53_RS14565at 3190.826 kb on + strandat 3190.827 kb on - strandat 3190.999 kb on + strandat 3190.999 kb on + strandat 3191.000 kb on - strandat 3191.000 kb on - strandat 3191.001 kb on + strandat 3191.001 kb on + strandat 3191.001 kb on + strandat 3191.001 kb on + strandat 3191.001 kb on + strandat 3191.001 kb on + strandat 3191.002 kb on - strandat 3191.002 kb on - strandat 3191.024 kb on + strandat 3191.176 kb on - strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.263 kb on + strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.264 kb on - strand, within LRK53_RS14570at 3191.292 kb on + strand, within LRK53_RS14570at 3191.293 kb on - strand, within LRK53_RS14570at 3191.293 kb on - strand, within LRK53_RS14570at 3191.293 kb on - strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.320 kb on + strand, within LRK53_RS14570at 3191.321 kb on - strand, within LRK53_RS14570at 3191.321 kb on - strand, within LRK53_RS14570at 3191.321 kb on - strand, within LRK53_RS14570at 3191.321 kb on - strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.425 kb on + strand, within LRK53_RS14570at 3191.426 kb on - strand, within LRK53_RS14570at 3191.426 kb on - strand, within LRK53_RS14570at 3191.426 kb on - strand, within LRK53_RS14570at 3191.426 kb on - strand, within LRK53_RS14570at 3191.426 kb on - strand, within LRK53_RS14570at 3191.431 kb on + strand, within LRK53_RS14570at 3191.431 kb on + strand, within LRK53_RS14570at 3191.431 kb on + strand, within LRK53_RS14570at 3191.432 kb on - strand, within LRK53_RS14570at 3191.551 kb on + strand, within LRK53_RS14570at 3191.551 kb on + strand, within LRK53_RS14570at 3191.552 kb on - strand, within LRK53_RS14570

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,190,341 + LRK53_RS14565 0.13 -1.6
3,190,342 - LRK53_RS14565 0.13 -1.5
3,190,342 - LRK53_RS14565 0.13 +1.6
3,190,342 - LRK53_RS14565 0.13 -0.8
3,190,342 - LRK53_RS14565 0.13 +0.6
3,190,342 - LRK53_RS14565 0.13 -1.4
3,190,342 - LRK53_RS14565 0.13 +0.0
3,190,342 - LRK53_RS14565 0.13 -1.2
3,190,351 - LRK53_RS14565 0.15 +0.8
3,190,351 - LRK53_RS14565 0.15 +0.1
3,190,372 + LRK53_RS14565 0.19 -1.0
3,190,373 - LRK53_RS14565 0.19 -0.3
3,190,379 + LRK53_RS14565 0.20 +1.3
3,190,497 + LRK53_RS14565 0.44 +1.6
3,190,497 + LRK53_RS14565 0.44 -0.1
3,190,497 + LRK53_RS14565 0.44 -1.5
3,190,497 + LRK53_RS14565 0.44 +1.3
3,190,497 + LRK53_RS14565 0.44 -0.8
3,190,497 + LRK53_RS14565 0.44 +0.2
3,190,497 + LRK53_RS14565 0.44 -0.6
3,190,497 + LRK53_RS14565 0.44 +1.6
3,190,497 + LRK53_RS14565 0.44 +1.8
3,190,497 + LRK53_RS14565 0.44 +0.3
3,190,497 + LRK53_RS14565 0.44 +1.9
3,190,497 + LRK53_RS14565 0.44 -0.0
3,190,497 + LRK53_RS14565 0.44 -1.0
3,190,497 + LRK53_RS14565 0.44 -0.7
3,190,497 + LRK53_RS14565 0.44 -0.2
3,190,497 + LRK53_RS14565 0.44 -0.7
3,190,497 + LRK53_RS14565 0.44 -1.6
3,190,497 + LRK53_RS14565 0.44 -1.2
3,190,497 + LRK53_RS14565 0.44 +1.4
3,190,497 + LRK53_RS14565 0.44 -0.3
3,190,497 + LRK53_RS14565 0.44 -0.1
3,190,497 + LRK53_RS14565 0.44 -2.3
3,190,497 + LRK53_RS14565 0.44 +0.4
3,190,497 + LRK53_RS14565 0.44 -0.8
3,190,497 + LRK53_RS14565 0.44 -1.8
3,190,497 + LRK53_RS14565 0.44 -1.6
3,190,497 + LRK53_RS14565 0.44 -0.1
3,190,497 + LRK53_RS14565 0.44 +1.4
3,190,498 - LRK53_RS14565 0.44 -1.0
3,190,498 - LRK53_RS14565 0.44 +1.8
3,190,498 - LRK53_RS14565 0.44 -0.5
3,190,498 - LRK53_RS14565 0.44 -0.2
3,190,498 - LRK53_RS14565 0.44 -1.3
3,190,498 - LRK53_RS14565 0.44 -0.8
3,190,498 - LRK53_RS14565 0.44 -0.2
3,190,498 - LRK53_RS14565 0.44 -0.1
3,190,498 - LRK53_RS14565 0.44 +0.9
3,190,498 - LRK53_RS14565 0.44 +0.4
3,190,498 - LRK53_RS14565 0.44 +0.2
3,190,498 - LRK53_RS14565 0.44 -0.3
3,190,498 - LRK53_RS14565 0.44 -2.5
3,190,498 - LRK53_RS14565 0.44 +0.2
3,190,498 - LRK53_RS14565 0.44 +0.4
3,190,498 - LRK53_RS14565 0.44 +0.9
3,190,498 - LRK53_RS14565 0.44 -1.8
3,190,498 - LRK53_RS14565 0.44 +0.5
3,190,498 - LRK53_RS14565 0.44 +1.3
3,190,498 - LRK53_RS14565 0.44 -1.4
3,190,498 - LRK53_RS14565 0.44 -1.6
3,190,498 - LRK53_RS14565 0.44 -0.8
3,190,566 + LRK53_RS14565 0.57 -1.0
3,190,593 + LRK53_RS14565 0.63 -0.1
3,190,594 - LRK53_RS14565 0.63 +0.2
3,190,826 + -0.5
3,190,827 - +0.0
3,190,999 + -0.7
3,190,999 + -0.8
3,191,000 - -0.6
3,191,000 - +0.0
3,191,001 + -0.8
3,191,001 + -1.2
3,191,001 + +0.1
3,191,001 + -1.3
3,191,001 + +0.1
3,191,001 + -0.1
3,191,002 - -1.3
3,191,002 - +0.4
3,191,024 + -2.1
3,191,176 - LRK53_RS14570 0.18 -0.5
3,191,263 + LRK53_RS14570 0.28 +0.6
3,191,263 + LRK53_RS14570 0.28 +0.9
3,191,263 + LRK53_RS14570 0.28 -1.2
3,191,263 + LRK53_RS14570 0.28 -2.9
3,191,263 + LRK53_RS14570 0.28 -0.3
3,191,263 + LRK53_RS14570 0.28 +1.9
3,191,263 + LRK53_RS14570 0.28 -1.2
3,191,263 + LRK53_RS14570 0.28 -0.3
3,191,263 + LRK53_RS14570 0.28 -1.3
3,191,263 + LRK53_RS14570 0.28 -1.6
3,191,263 + LRK53_RS14570 0.28 +0.6
3,191,263 + LRK53_RS14570 0.28 +0.2
3,191,263 + LRK53_RS14570 0.28 +0.6
3,191,263 + LRK53_RS14570 0.28 +0.9
3,191,263 + LRK53_RS14570 0.28 -1.5
3,191,263 + LRK53_RS14570 0.28 -0.5
3,191,263 + LRK53_RS14570 0.28 +0.8
3,191,264 - LRK53_RS14570 0.28 -1.1
3,191,264 - LRK53_RS14570 0.28 +1.0
3,191,264 - LRK53_RS14570 0.28 +0.9
3,191,264 - LRK53_RS14570 0.28 -0.5
3,191,264 - LRK53_RS14570 0.28 +0.5
3,191,264 - LRK53_RS14570 0.28 +0.4
3,191,264 - LRK53_RS14570 0.28 -0.5
3,191,264 - LRK53_RS14570 0.28 +0.5
3,191,264 - LRK53_RS14570 0.28 +0.1
3,191,264 - LRK53_RS14570 0.28 -0.1
3,191,292 + LRK53_RS14570 0.32 -0.0
3,191,293 - LRK53_RS14570 0.32 +0.4
3,191,293 - LRK53_RS14570 0.32 -0.1
3,191,293 - LRK53_RS14570 0.32 +0.7
3,191,320 + LRK53_RS14570 0.35 +0.2
3,191,320 + LRK53_RS14570 0.35 -1.3
3,191,320 + LRK53_RS14570 0.35 -0.5
3,191,320 + LRK53_RS14570 0.35 -0.7
3,191,320 + LRK53_RS14570 0.35 -0.7
3,191,320 + LRK53_RS14570 0.35 +1.5
3,191,321 - LRK53_RS14570 0.35 -0.5
3,191,321 - LRK53_RS14570 0.35 -2.4
3,191,321 - LRK53_RS14570 0.35 +0.2
3,191,321 - LRK53_RS14570 0.35 +1.1
3,191,425 + LRK53_RS14570 0.47 -0.7
3,191,425 + LRK53_RS14570 0.47 -1.4
3,191,425 + LRK53_RS14570 0.47 +0.7
3,191,425 + LRK53_RS14570 0.47 -0.6
3,191,425 + LRK53_RS14570 0.47 +0.0
3,191,425 + LRK53_RS14570 0.47 +0.0
3,191,425 + LRK53_RS14570 0.47 -1.1
3,191,426 - LRK53_RS14570 0.47 -1.0
3,191,426 - LRK53_RS14570 0.47 -0.7
3,191,426 - LRK53_RS14570 0.47 -1.0
3,191,426 - LRK53_RS14570 0.47 +0.6
3,191,426 - LRK53_RS14570 0.47 -0.6
3,191,431 + LRK53_RS14570 0.48 -0.3
3,191,431 + LRK53_RS14570 0.48 +0.4
3,191,431 + LRK53_RS14570 0.48 -2.5
3,191,432 - LRK53_RS14570 0.48 -1.0
3,191,551 + LRK53_RS14570 0.62 -0.5
3,191,551 + LRK53_RS14570 0.62 -1.4
3,191,552 - LRK53_RS14570 0.62 -0.7

Or see this region's nucleotide sequence