Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14445 and LRK53_RS14450 are separated by 149 nucleotides LRK53_RS14450 and LRK53_RS14455 are separated by 43 nucleotides LRK53_RS14455 and LRK53_RS14460 overlap by 4 nucleotides LRK53_RS14460 and LRK53_RS14465 are separated by 48 nucleotides
LRK53_RS14445: LRK53_RS14445 - TIGR00730 family Rossman fold protein, at 3,165,808 to 3,166,662
_RS14445
LRK53_RS14450: LRK53_RS14450 - cytochrome c, at 3,166,812 to 3,167,285
_RS14450
LRK53_RS14455: LRK53_RS14455 - ATP-binding protein, at 3,167,329 to 3,168,708
_RS14455
LRK53_RS14460: LRK53_RS14460 - response regulator transcription factor, at 3,168,705 to 3,169,379
_RS14460
LRK53_RS14465: LRK53_RS14465 - cytochrome b/b6 domain-containing protein, at 3,169,428 to 3,169,979
_RS14465
Position (kb) 3167
3168
3169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3166.360 kb on + strand, within LRK53_RS14445 at 3166.360 kb on + strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.361 kb on - strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.454 kb on + strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3166.455 kb on - strand, within LRK53_RS14445 at 3167.121 kb on + strand, within LRK53_RS14450 at 3167.337 kb on - strand at 3168.305 kb on + strand, within LRK53_RS14455 at 3168.305 kb on + strand, within LRK53_RS14455 at 3168.306 kb on - strand, within LRK53_RS14455 at 3168.306 kb on - strand, within LRK53_RS14455 at 3168.844 kb on + strand, within LRK53_RS14460 at 3168.844 kb on + strand, within LRK53_RS14460 at 3168.845 kb on - strand, within LRK53_RS14460 at 3168.845 kb on - strand, within LRK53_RS14460 at 3168.845 kb on - strand, within LRK53_RS14460 at 3168.874 kb on + strand, within LRK53_RS14460 at 3168.999 kb on + strand, within LRK53_RS14460 at 3169.087 kb on + strand, within LRK53_RS14460 at 3169.087 kb on + strand, within LRK53_RS14460 at 3169.087 kb on + strand, within LRK53_RS14460 at 3169.087 kb on + strand, within LRK53_RS14460 at 3169.087 kb on + strand, within LRK53_RS14460 at 3169.088 kb on - strand, within LRK53_RS14460 at 3169.088 kb on - strand, within LRK53_RS14460 at 3169.088 kb on - strand, within LRK53_RS14460 at 3169.246 kb on + strand, within LRK53_RS14460 at 3169.246 kb on + strand, within LRK53_RS14460 at 3169.246 kb on + strand, within LRK53_RS14460 at 3169.246 kb on + strand, within LRK53_RS14460 at 3169.246 kb on + strand, within LRK53_RS14460 at 3169.247 kb on - strand, within LRK53_RS14460 at 3169.247 kb on - strand, within LRK53_RS14460 at 3169.390 kb on + strand at 3169.390 kb on + strand at 3169.390 kb on + strand at 3169.513 kb on + strand, within LRK53_RS14465 at 3169.513 kb on + strand, within LRK53_RS14465 at 3169.514 kb on - strand, within LRK53_RS14465 at 3169.514 kb on - strand, within LRK53_RS14465 at 3169.573 kb on + strand, within LRK53_RS14465
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,166,360 + LRK53_RS14445 0.65 -0.9 3,166,360 + LRK53_RS14445 0.65 -0.2 3,166,361 - LRK53_RS14445 0.65 -0.4 3,166,361 - LRK53_RS14445 0.65 -0.0 3,166,361 - LRK53_RS14445 0.65 -1.4 3,166,361 - LRK53_RS14445 0.65 +0.5 3,166,454 + LRK53_RS14445 0.76 +0.5 3,166,454 + LRK53_RS14445 0.76 +0.2 3,166,454 + LRK53_RS14445 0.76 +1.6 3,166,454 + LRK53_RS14445 0.76 -1.3 3,166,455 - LRK53_RS14445 0.76 +0.7 3,166,455 - LRK53_RS14445 0.76 -0.5 3,166,455 - LRK53_RS14445 0.76 -1.2 3,166,455 - LRK53_RS14445 0.76 +0.5 3,166,455 - LRK53_RS14445 0.76 -0.4 3,166,455 - LRK53_RS14445 0.76 +0.6 3,167,121 + LRK53_RS14450 0.65 -1.4 3,167,337 - -0.5 3,168,305 + LRK53_RS14455 0.71 +0.3 3,168,305 + LRK53_RS14455 0.71 +1.4 3,168,306 - LRK53_RS14455 0.71 -2.0 3,168,306 - LRK53_RS14455 0.71 -0.1 3,168,844 + LRK53_RS14460 0.21 -2.0 3,168,844 + LRK53_RS14460 0.21 +0.3 3,168,845 - LRK53_RS14460 0.21 -1.0 3,168,845 - LRK53_RS14460 0.21 -1.0 3,168,845 - LRK53_RS14460 0.21 +1.2 3,168,874 + LRK53_RS14460 0.25 -2.2 3,168,999 + LRK53_RS14460 0.44 +1.8 3,169,087 + LRK53_RS14460 0.57 +1.0 3,169,087 + LRK53_RS14460 0.57 +0.8 3,169,087 + LRK53_RS14460 0.57 +0.9 3,169,087 + LRK53_RS14460 0.57 +1.4 3,169,087 + LRK53_RS14460 0.57 -1.9 3,169,088 - LRK53_RS14460 0.57 +0.5 3,169,088 - LRK53_RS14460 0.57 -1.1 3,169,088 - LRK53_RS14460 0.57 -0.5 3,169,246 + LRK53_RS14460 0.80 -0.6 3,169,246 + LRK53_RS14460 0.80 +2.0 3,169,246 + LRK53_RS14460 0.80 -1.4 3,169,246 + LRK53_RS14460 0.80 +1.2 3,169,246 + LRK53_RS14460 0.80 +0.0 3,169,247 - LRK53_RS14460 0.80 -0.3 3,169,247 - LRK53_RS14460 0.80 -0.2 3,169,390 + +0.2 3,169,390 + +1.1 3,169,390 + -1.8 3,169,513 + LRK53_RS14465 0.15 +0.0 3,169,513 + LRK53_RS14465 0.15 -0.2 3,169,514 - LRK53_RS14465 0.16 +0.6 3,169,514 - LRK53_RS14465 0.16 -0.2 3,169,573 + LRK53_RS14465 0.26 -0.8
Or see this region's nucleotide sequence