Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14430 and LRK53_RS14435 overlap by 8 nucleotides LRK53_RS14435 and LRK53_RS14440 are separated by 112 nucleotides
LRK53_RS14430: LRK53_RS14430 - efflux transporter outer membrane subunit, at 3,162,162 to 3,163,676
_RS14430
LRK53_RS14435: LRK53_RS14435 - hypothetical protein, at 3,163,669 to 3,164,277
_RS14435
LRK53_RS14440: LRK53_RS14440 - MBL fold metallo-hydrolase, at 3,164,390 to 3,165,811
_RS14440
Position (kb)
3163
3164
3165 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.729 kb on + strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3162.730 kb on - strand, within LRK53_RS14430 at 3163.365 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.428 kb on + strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.429 kb on - strand, within LRK53_RS14430 at 3163.449 kb on + strand, within LRK53_RS14430 at 3163.521 kb on + strand, within LRK53_RS14430 at 3163.521 kb on + strand, within LRK53_RS14430 at 3163.522 kb on - strand, within LRK53_RS14430 at 3163.536 kb on - strand at 3163.536 kb on - strand at 3163.628 kb on - strand at 3164.167 kb on + strand, within LRK53_RS14435 at 3164.167 kb on + strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.168 kb on - strand, within LRK53_RS14435 at 3164.177 kb on - strand, within LRK53_RS14435 at 3164.771 kb on + strand, within LRK53_RS14440 at 3164.771 kb on + strand, within LRK53_RS14440 at 3164.771 kb on + strand, within LRK53_RS14440 at 3164.771 kb on + strand, within LRK53_RS14440 at 3164.772 kb on - strand, within LRK53_RS14440 at 3164.772 kb on - strand, within LRK53_RS14440 at 3164.772 kb on - strand, within LRK53_RS14440 at 3164.772 kb on - strand, within LRK53_RS14440 at 3164.772 kb on - strand, within LRK53_RS14440 at 3164.808 kb on + strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3164.809 kb on - strand, within LRK53_RS14440 at 3165.035 kb on + strand, within LRK53_RS14440 at 3165.035 kb on + strand, within LRK53_RS14440 at 3165.036 kb on - strand, within LRK53_RS14440 at 3165.164 kb on + strand, within LRK53_RS14440 at 3165.164 kb on + strand, within LRK53_RS14440 at 3165.164 kb on + strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440 at 3165.165 kb on - strand, within LRK53_RS14440
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,162,729 + LRK53_RS14430 0.37 +0.3 3,162,729 + LRK53_RS14430 0.37 +0.1 3,162,729 + LRK53_RS14430 0.37 -0.4 3,162,730 - LRK53_RS14430 0.37 -0.7 3,162,730 - LRK53_RS14430 0.37 +0.1 3,162,730 - LRK53_RS14430 0.37 -2.3 3,162,730 - LRK53_RS14430 0.37 -0.2 3,162,730 - LRK53_RS14430 0.37 -2.4 3,162,730 - LRK53_RS14430 0.37 -1.1 3,163,365 + LRK53_RS14430 0.79 +0.0 3,163,428 + LRK53_RS14430 0.84 -0.4 3,163,428 + LRK53_RS14430 0.84 +0.2 3,163,428 + LRK53_RS14430 0.84 -0.1 3,163,428 + LRK53_RS14430 0.84 -0.6 3,163,428 + LRK53_RS14430 0.84 -2.4 3,163,428 + LRK53_RS14430 0.84 -0.8 3,163,428 + LRK53_RS14430 0.84 +0.2 3,163,428 + LRK53_RS14430 0.84 -0.1 3,163,428 + LRK53_RS14430 0.84 -1.4 3,163,428 + LRK53_RS14430 0.84 -0.7 3,163,428 + LRK53_RS14430 0.84 +1.1 3,163,428 + LRK53_RS14430 0.84 -1.7 3,163,428 + LRK53_RS14430 0.84 -0.1 3,163,429 - LRK53_RS14430 0.84 +0.8 3,163,429 - LRK53_RS14430 0.84 -0.5 3,163,429 - LRK53_RS14430 0.84 -0.4 3,163,429 - LRK53_RS14430 0.84 -0.4 3,163,429 - LRK53_RS14430 0.84 -0.5 3,163,429 - LRK53_RS14430 0.84 +0.8 3,163,429 - LRK53_RS14430 0.84 +1.1 3,163,449 + LRK53_RS14430 0.85 +0.1 3,163,521 + LRK53_RS14430 0.90 -0.5 3,163,521 + LRK53_RS14430 0.90 -1.1 3,163,522 - LRK53_RS14430 0.90 -0.4 3,163,536 - -0.5 3,163,536 - -1.4 3,163,628 - -0.4 3,164,167 + LRK53_RS14435 0.82 +2.5 3,164,167 + LRK53_RS14435 0.82 -0.3 3,164,168 - LRK53_RS14435 0.82 +0.4 3,164,168 - LRK53_RS14435 0.82 -1.1 3,164,168 - LRK53_RS14435 0.82 +0.1 3,164,177 - LRK53_RS14435 0.83 +0.9 3,164,771 + LRK53_RS14440 0.27 -1.5 3,164,771 + LRK53_RS14440 0.27 +1.2 3,164,771 + LRK53_RS14440 0.27 +0.1 3,164,771 + LRK53_RS14440 0.27 -2.0 3,164,772 - LRK53_RS14440 0.27 -0.0 3,164,772 - LRK53_RS14440 0.27 -1.5 3,164,772 - LRK53_RS14440 0.27 -0.8 3,164,772 - LRK53_RS14440 0.27 -0.5 3,164,772 - LRK53_RS14440 0.27 -0.1 3,164,808 + LRK53_RS14440 0.29 +1.5 3,164,809 - LRK53_RS14440 0.29 +1.0 3,164,809 - LRK53_RS14440 0.29 -2.5 3,164,809 - LRK53_RS14440 0.29 -0.5 3,164,809 - LRK53_RS14440 0.29 +2.8 3,164,809 - LRK53_RS14440 0.29 +0.5 3,164,809 - LRK53_RS14440 0.29 +0.3 3,164,809 - LRK53_RS14440 0.29 +0.0 3,165,035 + LRK53_RS14440 0.45 +0.6 3,165,035 + LRK53_RS14440 0.45 -0.4 3,165,036 - LRK53_RS14440 0.45 +2.4 3,165,164 + LRK53_RS14440 0.54 -0.4 3,165,164 + LRK53_RS14440 0.54 -1.0 3,165,164 + LRK53_RS14440 0.54 -1.8 3,165,165 - LRK53_RS14440 0.55 +0.7 3,165,165 - LRK53_RS14440 0.55 +0.6 3,165,165 - LRK53_RS14440 0.55 -1.5 3,165,165 - LRK53_RS14440 0.55 +2.8 3,165,165 - LRK53_RS14440 0.55 -0.3 3,165,165 - LRK53_RS14440 0.55 -0.2
Or see this region's nucleotide sequence