Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13925

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13915 and LRK53_RS13920 are separated by 137 nucleotidesLRK53_RS13920 and LRK53_RS13925 are separated by 190 nucleotidesLRK53_RS13925 and LRK53_RS13930 are separated by 4 nucleotidesLRK53_RS13930 and LRK53_RS13935 are separated by 205 nucleotides LRK53_RS13915: LRK53_RS13915 - NAD(P)/FAD-dependent oxidoreductase, at 3,065,002 to 3,065,970 _RS13915 LRK53_RS13920: LRK53_RS13920 - YajQ family cyclic di-GMP-binding protein, at 3,066,108 to 3,066,590 _RS13920 LRK53_RS13925: LRK53_RS13925 - NrsF family protein, at 3,066,781 to 3,067,434 _RS13925 LRK53_RS13930: LRK53_RS13930 - RNA polymerase sigma factor, at 3,067,439 to 3,068,026 _RS13930 LRK53_RS13935: LRK53_RS13935 - cytochrome c biogenesis protein DipZ, at 3,068,232 to 3,069,953 _RS13935 Position (kb) 3066 3067 3068Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3065.950 kb on + strandat 3065.950 kb on + strandat 3065.950 kb on + strandat 3065.951 kb on - strandat 3065.951 kb on - strandat 3065.951 kb on - strandat 3065.951 kb on - strandat 3066.052 kb on + strandat 3066.052 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.072 kb on + strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.073 kb on - strandat 3066.090 kb on + strandat 3066.090 kb on + strandat 3066.090 kb on + strandat 3066.091 kb on - strandat 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.222 kb on + strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.223 kb on - strand, within LRK53_RS13920at 3066.386 kb on + strand, within LRK53_RS13920at 3066.386 kb on + strand, within LRK53_RS13920at 3066.386 kb on + strand, within LRK53_RS13920at 3066.386 kb on + strand, within LRK53_RS13920at 3066.387 kb on - strand, within LRK53_RS13920at 3066.606 kb on - strandat 3066.730 kb on + strandat 3066.730 kb on + strandat 3066.730 kb on + strandat 3066.730 kb on + strandat 3066.730 kb on + strandat 3066.731 kb on - strandat 3066.763 kb on + strandat 3066.763 kb on + strandat 3066.782 kb on + strandat 3066.782 kb on + strandat 3066.782 kb on + strandat 3066.782 kb on + strandat 3066.782 kb on + strandat 3066.783 kb on - strandat 3066.881 kb on + strand, within LRK53_RS13925at 3066.881 kb on + strand, within LRK53_RS13925at 3066.881 kb on + strand, within LRK53_RS13925at 3066.995 kb on - strand, within LRK53_RS13925at 3067.289 kb on + strand, within LRK53_RS13925at 3067.513 kb on + strand, within LRK53_RS13930at 3067.513 kb on + strand, within LRK53_RS13930at 3067.514 kb on - strand, within LRK53_RS13930at 3067.769 kb on + strand, within LRK53_RS13930at 3067.770 kb on - strand, within LRK53_RS13930at 3067.782 kb on + strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.783 kb on - strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.800 kb on + strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.801 kb on - strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.804 kb on + strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.805 kb on - strand, within LRK53_RS13930at 3067.929 kb on + strand, within LRK53_RS13930at 3067.930 kb on - strand, within LRK53_RS13930at 3067.930 kb on - strand, within LRK53_RS13930at 3068.062 kb on + strandat 3068.062 kb on + strandat 3068.062 kb on + strandat 3068.062 kb on + strandat 3068.063 kb on - strandat 3068.063 kb on - strandat 3068.063 kb on - strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.066 kb on + strandat 3068.067 kb on - strandat 3068.067 kb on - strandat 3068.067 kb on - strandat 3068.067 kb on - strandat 3068.067 kb on - strandat 3068.067 kb on - strandat 3068.167 kb on + strandat 3068.167 kb on + strandat 3068.168 kb on - strandat 3068.168 kb on - strandat 3068.224 kb on + strandat 3068.225 kb on - strandat 3068.225 kb on - strandat 3068.225 kb on - strandat 3068.225 kb on - strandat 3068.253 kb on + strandat 3068.253 kb on + strandat 3068.253 kb on + strandat 3068.254 kb on - strandat 3068.254 kb on - strandat 3068.254 kb on - strandat 3068.266 kb on + strandat 3068.267 kb on - strandat 3068.267 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,065,950 + -2.6
3,065,950 + +0.8
3,065,950 + -1.7
3,065,951 - +0.9
3,065,951 - -1.3
3,065,951 - -0.6
3,065,951 - -0.6
3,066,052 + -0.2
3,066,052 + +1.1
3,066,072 + +0.5
3,066,072 + +1.0
3,066,072 + -0.4
3,066,072 + -2.0
3,066,072 + -0.6
3,066,072 + -0.6
3,066,072 + -0.5
3,066,072 + +0.1
3,066,072 + +0.1
3,066,072 + -0.8
3,066,072 + +0.8
3,066,072 + -0.9
3,066,073 - -0.2
3,066,073 - -0.4
3,066,073 - +0.9
3,066,073 - -1.5
3,066,073 - -0.0
3,066,073 - -1.4
3,066,073 - +0.6
3,066,073 - +1.4
3,066,073 - -2.3
3,066,090 + +1.4
3,066,090 + -1.3
3,066,090 + -0.8
3,066,091 - +0.2
3,066,222 + LRK53_RS13920 0.24 +1.2
3,066,222 + LRK53_RS13920 0.24 -2.3
3,066,222 + LRK53_RS13920 0.24 +1.1
3,066,222 + LRK53_RS13920 0.24 -0.5
3,066,222 + LRK53_RS13920 0.24 -0.5
3,066,222 + LRK53_RS13920 0.24 -0.7
3,066,222 + LRK53_RS13920 0.24 -0.4
3,066,223 - LRK53_RS13920 0.24 +0.3
3,066,223 - LRK53_RS13920 0.24 +0.2
3,066,223 - LRK53_RS13920 0.24 -0.0
3,066,223 - LRK53_RS13920 0.24 +0.1
3,066,223 - LRK53_RS13920 0.24 -0.6
3,066,223 - LRK53_RS13920 0.24 +0.9
3,066,223 - LRK53_RS13920 0.24 -0.2
3,066,223 - LRK53_RS13920 0.24 +0.7
3,066,223 - LRK53_RS13920 0.24 -2.8
3,066,223 - LRK53_RS13920 0.24 +0.3
3,066,223 - LRK53_RS13920 0.24 -0.7
3,066,386 + LRK53_RS13920 0.58 +1.1
3,066,386 + LRK53_RS13920 0.58 -1.2
3,066,386 + LRK53_RS13920 0.58 +1.8
3,066,386 + LRK53_RS13920 0.58 -0.6
3,066,387 - LRK53_RS13920 0.58 -0.0
3,066,606 - -2.5
3,066,730 + -3.6
3,066,730 + -1.3
3,066,730 + +0.1
3,066,730 + -2.3
3,066,730 + -1.2
3,066,731 - +0.6
3,066,763 + -0.5
3,066,763 + +0.5
3,066,782 + -0.1
3,066,782 + -3.1
3,066,782 + +0.4
3,066,782 + -0.7
3,066,782 + +0.8
3,066,783 - +0.3
3,066,881 + LRK53_RS13925 0.15 +0.7
3,066,881 + LRK53_RS13925 0.15 +1.1
3,066,881 + LRK53_RS13925 0.15 -1.0
3,066,995 - LRK53_RS13925 0.33 +0.2
3,067,289 + LRK53_RS13925 0.78 -0.2
3,067,513 + LRK53_RS13930 0.13 +0.4
3,067,513 + LRK53_RS13930 0.13 +0.9
3,067,514 - LRK53_RS13930 0.13 -2.5
3,067,769 + LRK53_RS13930 0.56 -0.4
3,067,770 - LRK53_RS13930 0.56 +0.4
3,067,782 + LRK53_RS13930 0.58 +1.3
3,067,783 - LRK53_RS13930 0.59 +1.0
3,067,783 - LRK53_RS13930 0.59 -1.9
3,067,783 - LRK53_RS13930 0.59 +0.1
3,067,783 - LRK53_RS13930 0.59 -0.3
3,067,783 - LRK53_RS13930 0.59 +0.0
3,067,783 - LRK53_RS13930 0.59 -0.4
3,067,783 - LRK53_RS13930 0.59 -0.8
3,067,800 + LRK53_RS13930 0.61 -0.2
3,067,800 + LRK53_RS13930 0.61 -1.9
3,067,800 + LRK53_RS13930 0.61 +1.8
3,067,800 + LRK53_RS13930 0.61 +1.8
3,067,800 + LRK53_RS13930 0.61 -2.5
3,067,800 + LRK53_RS13930 0.61 +0.8
3,067,800 + LRK53_RS13930 0.61 -0.2
3,067,800 + LRK53_RS13930 0.61 -1.0
3,067,800 + LRK53_RS13930 0.61 -0.5
3,067,800 + LRK53_RS13930 0.61 -2.3
3,067,801 - LRK53_RS13930 0.62 -0.6
3,067,801 - LRK53_RS13930 0.62 +0.4
3,067,801 - LRK53_RS13930 0.62 -0.9
3,067,801 - LRK53_RS13930 0.62 +0.6
3,067,801 - LRK53_RS13930 0.62 -2.4
3,067,801 - LRK53_RS13930 0.62 -0.6
3,067,801 - LRK53_RS13930 0.62 -0.6
3,067,804 + LRK53_RS13930 0.62 -0.5
3,067,804 + LRK53_RS13930 0.62 +0.1
3,067,804 + LRK53_RS13930 0.62 -0.2
3,067,804 + LRK53_RS13930 0.62 -0.0
3,067,804 + LRK53_RS13930 0.62 -0.9
3,067,804 + LRK53_RS13930 0.62 -0.5
3,067,804 + LRK53_RS13930 0.62 -1.7
3,067,805 - LRK53_RS13930 0.62 -0.3
3,067,805 - LRK53_RS13930 0.62 +0.5
3,067,805 - LRK53_RS13930 0.62 -1.0
3,067,805 - LRK53_RS13930 0.62 -0.5
3,067,805 - LRK53_RS13930 0.62 -0.5
3,067,805 - LRK53_RS13930 0.62 -0.4
3,067,805 - LRK53_RS13930 0.62 -0.0
3,067,805 - LRK53_RS13930 0.62 -0.7
3,067,805 - LRK53_RS13930 0.62 +0.1
3,067,929 + LRK53_RS13930 0.83 +0.3
3,067,930 - LRK53_RS13930 0.84 +0.8
3,067,930 - LRK53_RS13930 0.84 -1.1
3,068,062 + -0.6
3,068,062 + -0.4
3,068,062 + -1.6
3,068,062 + +1.5
3,068,063 - +0.4
3,068,063 - -0.6
3,068,063 - -1.8
3,068,066 + +0.4
3,068,066 + +0.1
3,068,066 + -1.4
3,068,066 + -0.5
3,068,066 + +0.7
3,068,066 + +1.0
3,068,066 + +0.1
3,068,066 + +0.6
3,068,066 + -1.0
3,068,066 + -0.0
3,068,067 - +1.0
3,068,067 - +1.2
3,068,067 - -0.1
3,068,067 - -0.5
3,068,067 - +0.6
3,068,067 - -1.5
3,068,167 + -0.2
3,068,167 + -0.9
3,068,168 - -1.4
3,068,168 - -0.0
3,068,224 + +0.5
3,068,225 - -0.7
3,068,225 - -2.1
3,068,225 - -0.6
3,068,225 - -0.5
3,068,253 + -1.0
3,068,253 + -0.6
3,068,253 + +0.8
3,068,254 - -0.2
3,068,254 - -0.6
3,068,254 - -0.7
3,068,266 + -1.3
3,068,267 - -0.9
3,068,267 - -0.7

Or see this region's nucleotide sequence