Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13915 and LRK53_RS13920 are separated by 137 nucleotides LRK53_RS13920 and LRK53_RS13925 are separated by 190 nucleotides LRK53_RS13925 and LRK53_RS13930 are separated by 4 nucleotides LRK53_RS13930 and LRK53_RS13935 are separated by 205 nucleotides
LRK53_RS13915: LRK53_RS13915 - NAD(P)/FAD-dependent oxidoreductase, at 3,065,002 to 3,065,970
_RS13915
LRK53_RS13920: LRK53_RS13920 - YajQ family cyclic di-GMP-binding protein, at 3,066,108 to 3,066,590
_RS13920
LRK53_RS13925: LRK53_RS13925 - NrsF family protein, at 3,066,781 to 3,067,434
_RS13925
LRK53_RS13930: LRK53_RS13930 - RNA polymerase sigma factor, at 3,067,439 to 3,068,026
_RS13930
LRK53_RS13935: LRK53_RS13935 - cytochrome c biogenesis protein DipZ, at 3,068,232 to 3,069,953
_RS13935
Position (kb)
3066
3067
3068 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3065.950 kb on + strand at 3065.950 kb on + strand at 3065.950 kb on + strand at 3065.951 kb on - strand at 3065.951 kb on - strand at 3065.951 kb on - strand at 3065.951 kb on - strand at 3066.052 kb on + strand at 3066.052 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.072 kb on + strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.073 kb on - strand at 3066.090 kb on + strand at 3066.090 kb on + strand at 3066.090 kb on + strand at 3066.091 kb on - strand at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.222 kb on + strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.223 kb on - strand, within LRK53_RS13920 at 3066.386 kb on + strand, within LRK53_RS13920 at 3066.386 kb on + strand, within LRK53_RS13920 at 3066.386 kb on + strand, within LRK53_RS13920 at 3066.386 kb on + strand, within LRK53_RS13920 at 3066.387 kb on - strand, within LRK53_RS13920 at 3066.606 kb on - strand at 3066.730 kb on + strand at 3066.730 kb on + strand at 3066.730 kb on + strand at 3066.730 kb on + strand at 3066.730 kb on + strand at 3066.731 kb on - strand at 3066.763 kb on + strand at 3066.763 kb on + strand at 3066.782 kb on + strand at 3066.782 kb on + strand at 3066.782 kb on + strand at 3066.782 kb on + strand at 3066.782 kb on + strand at 3066.783 kb on - strand at 3066.881 kb on + strand, within LRK53_RS13925 at 3066.881 kb on + strand, within LRK53_RS13925 at 3066.881 kb on + strand, within LRK53_RS13925 at 3066.995 kb on - strand, within LRK53_RS13925 at 3067.289 kb on + strand, within LRK53_RS13925 at 3067.513 kb on + strand, within LRK53_RS13930 at 3067.513 kb on + strand, within LRK53_RS13930 at 3067.514 kb on - strand, within LRK53_RS13930 at 3067.769 kb on + strand, within LRK53_RS13930 at 3067.770 kb on - strand, within LRK53_RS13930 at 3067.782 kb on + strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.783 kb on - strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.800 kb on + strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.801 kb on - strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.804 kb on + strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.805 kb on - strand, within LRK53_RS13930 at 3067.929 kb on + strand, within LRK53_RS13930 at 3067.930 kb on - strand, within LRK53_RS13930 at 3067.930 kb on - strand, within LRK53_RS13930 at 3068.062 kb on + strand at 3068.062 kb on + strand at 3068.062 kb on + strand at 3068.062 kb on + strand at 3068.063 kb on - strand at 3068.063 kb on - strand at 3068.063 kb on - strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.066 kb on + strand at 3068.067 kb on - strand at 3068.067 kb on - strand at 3068.067 kb on - strand at 3068.067 kb on - strand at 3068.067 kb on - strand at 3068.067 kb on - strand at 3068.167 kb on + strand at 3068.167 kb on + strand at 3068.168 kb on - strand at 3068.168 kb on - strand at 3068.224 kb on + strand at 3068.225 kb on - strand at 3068.225 kb on - strand at 3068.225 kb on - strand at 3068.225 kb on - strand at 3068.253 kb on + strand at 3068.253 kb on + strand at 3068.253 kb on + strand at 3068.254 kb on - strand at 3068.254 kb on - strand at 3068.254 kb on - strand at 3068.266 kb on + strand at 3068.267 kb on - strand at 3068.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,065,950 + -2.6 3,065,950 + +0.8 3,065,950 + -1.7 3,065,951 - +0.9 3,065,951 - -1.3 3,065,951 - -0.6 3,065,951 - -0.6 3,066,052 + -0.2 3,066,052 + +1.1 3,066,072 + +0.5 3,066,072 + +1.0 3,066,072 + -0.4 3,066,072 + -2.0 3,066,072 + -0.6 3,066,072 + -0.6 3,066,072 + -0.5 3,066,072 + +0.1 3,066,072 + +0.1 3,066,072 + -0.8 3,066,072 + +0.8 3,066,072 + -0.9 3,066,073 - -0.2 3,066,073 - -0.4 3,066,073 - +0.9 3,066,073 - -1.5 3,066,073 - -0.0 3,066,073 - -1.4 3,066,073 - +0.6 3,066,073 - +1.4 3,066,073 - -2.3 3,066,090 + +1.4 3,066,090 + -1.3 3,066,090 + -0.8 3,066,091 - +0.2 3,066,222 + LRK53_RS13920 0.24 +1.2 3,066,222 + LRK53_RS13920 0.24 -2.3 3,066,222 + LRK53_RS13920 0.24 +1.1 3,066,222 + LRK53_RS13920 0.24 -0.5 3,066,222 + LRK53_RS13920 0.24 -0.5 3,066,222 + LRK53_RS13920 0.24 -0.7 3,066,222 + LRK53_RS13920 0.24 -0.4 3,066,223 - LRK53_RS13920 0.24 +0.3 3,066,223 - LRK53_RS13920 0.24 +0.2 3,066,223 - LRK53_RS13920 0.24 -0.0 3,066,223 - LRK53_RS13920 0.24 +0.1 3,066,223 - LRK53_RS13920 0.24 -0.6 3,066,223 - LRK53_RS13920 0.24 +0.9 3,066,223 - LRK53_RS13920 0.24 -0.2 3,066,223 - LRK53_RS13920 0.24 +0.7 3,066,223 - LRK53_RS13920 0.24 -2.8 3,066,223 - LRK53_RS13920 0.24 +0.3 3,066,223 - LRK53_RS13920 0.24 -0.7 3,066,386 + LRK53_RS13920 0.58 +1.1 3,066,386 + LRK53_RS13920 0.58 -1.2 3,066,386 + LRK53_RS13920 0.58 +1.8 3,066,386 + LRK53_RS13920 0.58 -0.6 3,066,387 - LRK53_RS13920 0.58 -0.0 3,066,606 - -2.5 3,066,730 + -3.6 3,066,730 + -1.3 3,066,730 + +0.1 3,066,730 + -2.3 3,066,730 + -1.2 3,066,731 - +0.6 3,066,763 + -0.5 3,066,763 + +0.5 3,066,782 + -0.1 3,066,782 + -3.1 3,066,782 + +0.4 3,066,782 + -0.7 3,066,782 + +0.8 3,066,783 - +0.3 3,066,881 + LRK53_RS13925 0.15 +0.7 3,066,881 + LRK53_RS13925 0.15 +1.1 3,066,881 + LRK53_RS13925 0.15 -1.0 3,066,995 - LRK53_RS13925 0.33 +0.2 3,067,289 + LRK53_RS13925 0.78 -0.2 3,067,513 + LRK53_RS13930 0.13 +0.4 3,067,513 + LRK53_RS13930 0.13 +0.9 3,067,514 - LRK53_RS13930 0.13 -2.5 3,067,769 + LRK53_RS13930 0.56 -0.4 3,067,770 - LRK53_RS13930 0.56 +0.4 3,067,782 + LRK53_RS13930 0.58 +1.3 3,067,783 - LRK53_RS13930 0.59 +1.0 3,067,783 - LRK53_RS13930 0.59 -1.9 3,067,783 - LRK53_RS13930 0.59 +0.1 3,067,783 - LRK53_RS13930 0.59 -0.3 3,067,783 - LRK53_RS13930 0.59 +0.0 3,067,783 - LRK53_RS13930 0.59 -0.4 3,067,783 - LRK53_RS13930 0.59 -0.8 3,067,800 + LRK53_RS13930 0.61 -0.2 3,067,800 + LRK53_RS13930 0.61 -1.9 3,067,800 + LRK53_RS13930 0.61 +1.8 3,067,800 + LRK53_RS13930 0.61 +1.8 3,067,800 + LRK53_RS13930 0.61 -2.5 3,067,800 + LRK53_RS13930 0.61 +0.8 3,067,800 + LRK53_RS13930 0.61 -0.2 3,067,800 + LRK53_RS13930 0.61 -1.0 3,067,800 + LRK53_RS13930 0.61 -0.5 3,067,800 + LRK53_RS13930 0.61 -2.3 3,067,801 - LRK53_RS13930 0.62 -0.6 3,067,801 - LRK53_RS13930 0.62 +0.4 3,067,801 - LRK53_RS13930 0.62 -0.9 3,067,801 - LRK53_RS13930 0.62 +0.6 3,067,801 - LRK53_RS13930 0.62 -2.4 3,067,801 - LRK53_RS13930 0.62 -0.6 3,067,801 - LRK53_RS13930 0.62 -0.6 3,067,804 + LRK53_RS13930 0.62 -0.5 3,067,804 + LRK53_RS13930 0.62 +0.1 3,067,804 + LRK53_RS13930 0.62 -0.2 3,067,804 + LRK53_RS13930 0.62 -0.0 3,067,804 + LRK53_RS13930 0.62 -0.9 3,067,804 + LRK53_RS13930 0.62 -0.5 3,067,804 + LRK53_RS13930 0.62 -1.7 3,067,805 - LRK53_RS13930 0.62 -0.3 3,067,805 - LRK53_RS13930 0.62 +0.5 3,067,805 - LRK53_RS13930 0.62 -1.0 3,067,805 - LRK53_RS13930 0.62 -0.5 3,067,805 - LRK53_RS13930 0.62 -0.5 3,067,805 - LRK53_RS13930 0.62 -0.4 3,067,805 - LRK53_RS13930 0.62 -0.0 3,067,805 - LRK53_RS13930 0.62 -0.7 3,067,805 - LRK53_RS13930 0.62 +0.1 3,067,929 + LRK53_RS13930 0.83 +0.3 3,067,930 - LRK53_RS13930 0.84 +0.8 3,067,930 - LRK53_RS13930 0.84 -1.1 3,068,062 + -0.6 3,068,062 + -0.4 3,068,062 + -1.6 3,068,062 + +1.5 3,068,063 - +0.4 3,068,063 - -0.6 3,068,063 - -1.8 3,068,066 + +0.4 3,068,066 + +0.1 3,068,066 + -1.4 3,068,066 + -0.5 3,068,066 + +0.7 3,068,066 + +1.0 3,068,066 + +0.1 3,068,066 + +0.6 3,068,066 + -1.0 3,068,066 + -0.0 3,068,067 - +1.0 3,068,067 - +1.2 3,068,067 - -0.1 3,068,067 - -0.5 3,068,067 - +0.6 3,068,067 - -1.5 3,068,167 + -0.2 3,068,167 + -0.9 3,068,168 - -1.4 3,068,168 - -0.0 3,068,224 + +0.5 3,068,225 - -0.7 3,068,225 - -2.1 3,068,225 - -0.6 3,068,225 - -0.5 3,068,253 + -1.0 3,068,253 + -0.6 3,068,253 + +0.8 3,068,254 - -0.2 3,068,254 - -0.6 3,068,254 - -0.7 3,068,266 + -1.3 3,068,267 - -0.9 3,068,267 - -0.7
Or see this region's nucleotide sequence