Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13730 and LRK53_RS13735 are separated by 141 nucleotides LRK53_RS13735 and LRK53_RS13740 are separated by 164 nucleotides LRK53_RS13740 and LRK53_RS13745 are separated by 80 nucleotides
LRK53_RS13730: LRK53_RS13730 - hypothetical protein, at 3,030,541 to 3,032,226
_RS13730
LRK53_RS13735: LRK53_RS13735 - hypothetical protein, at 3,032,368 to 3,032,595
_RS13735
LRK53_RS13740: LRK53_RS13740 - hypothetical protein, at 3,032,760 to 3,033,155
_RS13740
LRK53_RS13745: LRK53_RS13745 - toll/interleukin-1 receptor domain-containing protein, at 3,033,236 to 3,035,452
_RS13745
Position (kb)
3032
3033
3034 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3031.787 kb on - strand, within LRK53_RS13730 at 3031.815 kb on + strand, within LRK53_RS13730 at 3031.815 kb on + strand, within LRK53_RS13730 at 3031.833 kb on + strand, within LRK53_RS13730 at 3031.834 kb on - strand, within LRK53_RS13730 at 3031.835 kb on + strand, within LRK53_RS13730 at 3031.835 kb on + strand, within LRK53_RS13730 at 3031.835 kb on + strand, within LRK53_RS13730 at 3031.835 kb on + strand, within LRK53_RS13730 at 3031.835 kb on + strand, within LRK53_RS13730 at 3031.836 kb on - strand, within LRK53_RS13730 at 3031.836 kb on - strand, within LRK53_RS13730 at 3031.836 kb on - strand, within LRK53_RS13730 at 3031.836 kb on - strand, within LRK53_RS13730 at 3031.854 kb on - strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.994 kb on + strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3031.995 kb on - strand, within LRK53_RS13730 at 3032.187 kb on + strand at 3032.188 kb on - strand at 3032.250 kb on + strand at 3032.251 kb on - strand at 3032.251 kb on - strand at 3032.251 kb on - strand at 3032.331 kb on + strand at 3032.332 kb on - strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.761 kb on + strand at 3032.762 kb on - strand at 3032.762 kb on - strand at 3032.762 kb on - strand at 3032.762 kb on - strand at 3032.822 kb on - strand, within LRK53_RS13740 at 3032.822 kb on - strand, within LRK53_RS13740 at 3032.822 kb on - strand, within LRK53_RS13740 at 3032.822 kb on - strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.854 kb on + strand, within LRK53_RS13740 at 3032.855 kb on - strand, within LRK53_RS13740 at 3032.855 kb on - strand, within LRK53_RS13740 at 3032.855 kb on - strand, within LRK53_RS13740 at 3032.855 kb on - strand, within LRK53_RS13740 at 3032.855 kb on - strand, within LRK53_RS13740 at 3033.289 kb on + strand at 3033.289 kb on + strand at 3033.289 kb on + strand at 3033.290 kb on - strand at 3033.300 kb on + strand at 3033.323 kb on + strand at 3033.323 kb on + strand at 3033.323 kb on + strand at 3033.323 kb on + strand at 3033.323 kb on + strand at 3033.323 kb on + strand at 3033.324 kb on - strand at 3033.324 kb on - strand at 3033.324 kb on - strand at 3033.362 kb on + strand at 3033.362 kb on + strand at 3033.362 kb on + strand at 3033.362 kb on + strand at 3033.363 kb on - strand at 3033.363 kb on - strand at 3033.363 kb on - strand at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.834 kb on + strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.835 kb on - strand, within LRK53_RS13745 at 3033.866 kb on - strand, within LRK53_RS13745 at 3033.879 kb on - strand, within LRK53_RS13745 at 3033.879 kb on - strand, within LRK53_RS13745 at 3033.934 kb on + strand, within LRK53_RS13745 at 3033.934 kb on + strand, within LRK53_RS13745 at 3033.935 kb on - strand, within LRK53_RS13745 at 3033.935 kb on - strand, within LRK53_RS13745 at 3034.059 kb on + strand, within LRK53_RS13745 at 3034.059 kb on + strand, within LRK53_RS13745 at 3034.059 kb on + strand, within LRK53_RS13745 at 3034.059 kb on + strand, within LRK53_RS13745 at 3034.059 kb on + strand, within LRK53_RS13745 at 3034.060 kb on - strand, within LRK53_RS13745 at 3034.060 kb on - strand, within LRK53_RS13745
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 3,031,787 - LRK53_RS13730 0.74 -1.0 3,031,815 + LRK53_RS13730 0.76 -0.9 3,031,815 + LRK53_RS13730 0.76 -0.2 3,031,833 + LRK53_RS13730 0.77 -0.6 3,031,834 - LRK53_RS13730 0.77 +0.6 3,031,835 + LRK53_RS13730 0.77 +0.5 3,031,835 + LRK53_RS13730 0.77 -1.8 3,031,835 + LRK53_RS13730 0.77 -0.1 3,031,835 + LRK53_RS13730 0.77 +1.3 3,031,835 + LRK53_RS13730 0.77 -0.8 3,031,836 - LRK53_RS13730 0.77 +0.7 3,031,836 - LRK53_RS13730 0.77 -0.2 3,031,836 - LRK53_RS13730 0.77 -0.1 3,031,836 - LRK53_RS13730 0.77 -0.4 3,031,854 - LRK53_RS13730 0.78 -1.1 3,031,994 + LRK53_RS13730 0.86 -0.1 3,031,994 + LRK53_RS13730 0.86 +2.6 3,031,994 + LRK53_RS13730 0.86 -1.0 3,031,994 + LRK53_RS13730 0.86 +1.4 3,031,994 + LRK53_RS13730 0.86 +0.1 3,031,994 + LRK53_RS13730 0.86 -0.1 3,031,994 + LRK53_RS13730 0.86 -3.2 3,031,994 + LRK53_RS13730 0.86 -0.2 3,031,994 + LRK53_RS13730 0.86 -0.5 3,031,994 + LRK53_RS13730 0.86 -1.4 3,031,994 + LRK53_RS13730 0.86 -0.0 3,031,994 + LRK53_RS13730 0.86 -2.4 3,031,994 + LRK53_RS13730 0.86 -0.1 3,031,994 + LRK53_RS13730 0.86 -2.6 3,031,994 + LRK53_RS13730 0.86 -1.2 3,031,994 + LRK53_RS13730 0.86 +0.3 3,031,994 + LRK53_RS13730 0.86 -0.2 3,031,994 + LRK53_RS13730 0.86 -1.2 3,031,994 + LRK53_RS13730 0.86 +0.6 3,031,995 - LRK53_RS13730 0.86 +1.2 3,031,995 - LRK53_RS13730 0.86 +1.2 3,031,995 - LRK53_RS13730 0.86 +0.1 3,031,995 - LRK53_RS13730 0.86 +0.8 3,031,995 - LRK53_RS13730 0.86 +1.1 3,031,995 - LRK53_RS13730 0.86 -1.5 3,031,995 - LRK53_RS13730 0.86 +0.6 3,031,995 - LRK53_RS13730 0.86 -1.3 3,031,995 - LRK53_RS13730 0.86 +0.8 3,031,995 - LRK53_RS13730 0.86 -0.2 3,031,995 - LRK53_RS13730 0.86 -0.0 3,031,995 - LRK53_RS13730 0.86 +1.6 3,031,995 - LRK53_RS13730 0.86 +0.3 3,031,995 - LRK53_RS13730 0.86 -2.0 3,031,995 - LRK53_RS13730 0.86 +0.6 3,031,995 - LRK53_RS13730 0.86 +0.2 3,031,995 - LRK53_RS13730 0.86 +2.3 3,031,995 - LRK53_RS13730 0.86 -0.7 3,031,995 - LRK53_RS13730 0.86 -1.5 3,031,995 - LRK53_RS13730 0.86 -2.5 3,031,995 - LRK53_RS13730 0.86 +0.8 3,031,995 - LRK53_RS13730 0.86 -0.7 3,031,995 - LRK53_RS13730 0.86 -1.0 3,031,995 - LRK53_RS13730 0.86 +1.5 3,031,995 - LRK53_RS13730 0.86 -2.0 3,031,995 - LRK53_RS13730 0.86 -0.5 3,031,995 - LRK53_RS13730 0.86 +1.2 3,031,995 - LRK53_RS13730 0.86 -0.3 3,031,995 - LRK53_RS13730 0.86 -1.5 3,031,995 - LRK53_RS13730 0.86 -0.9 3,031,995 - LRK53_RS13730 0.86 -1.3 3,031,995 - LRK53_RS13730 0.86 -0.2 3,032,187 + -1.1 3,032,188 - -0.8 3,032,250 + +2.6 3,032,251 - -0.7 3,032,251 - -2.9 3,032,251 - -1.0 3,032,331 + +0.1 3,032,332 - +1.9 3,032,761 + -0.6 3,032,761 + +0.5 3,032,761 + -2.3 3,032,761 + -0.9 3,032,761 + +2.9 3,032,761 + -0.4 3,032,761 + +0.3 3,032,761 + -0.4 3,032,761 + -2.1 3,032,762 - +0.2 3,032,762 - +0.8 3,032,762 - +0.2 3,032,762 - -0.1 3,032,822 - LRK53_RS13740 0.16 -0.9 3,032,822 - LRK53_RS13740 0.16 -2.5 3,032,822 - LRK53_RS13740 0.16 -0.8 3,032,822 - LRK53_RS13740 0.16 +0.1 3,032,854 + LRK53_RS13740 0.24 -1.3 3,032,854 + LRK53_RS13740 0.24 -0.4 3,032,854 + LRK53_RS13740 0.24 -0.9 3,032,854 + LRK53_RS13740 0.24 +0.5 3,032,854 + LRK53_RS13740 0.24 -3.3 3,032,854 + LRK53_RS13740 0.24 +0.3 3,032,854 + LRK53_RS13740 0.24 -1.0 3,032,855 - LRK53_RS13740 0.24 -0.2 3,032,855 - LRK53_RS13740 0.24 -0.8 3,032,855 - LRK53_RS13740 0.24 -0.0 3,032,855 - LRK53_RS13740 0.24 -0.6 3,032,855 - LRK53_RS13740 0.24 -0.9 3,033,289 + -0.0 3,033,289 + -2.3 3,033,289 + +0.2 3,033,290 - +2.2 3,033,300 + -2.4 3,033,323 + +0.5 3,033,323 + +1.6 3,033,323 + -0.0 3,033,323 + +0.9 3,033,323 + -0.1 3,033,323 + +0.1 3,033,324 - +0.2 3,033,324 - +0.6 3,033,324 - -0.2 3,033,362 + -1.5 3,033,362 + -2.2 3,033,362 + +1.3 3,033,362 + +1.0 3,033,363 - -1.2 3,033,363 - -0.1 3,033,363 - -0.8 3,033,834 + LRK53_RS13745 0.27 +0.2 3,033,834 + LRK53_RS13745 0.27 +1.4 3,033,834 + LRK53_RS13745 0.27 -0.7 3,033,834 + LRK53_RS13745 0.27 -0.3 3,033,834 + LRK53_RS13745 0.27 -1.3 3,033,834 + LRK53_RS13745 0.27 -0.0 3,033,834 + LRK53_RS13745 0.27 +3.7 3,033,834 + LRK53_RS13745 0.27 -0.0 3,033,834 + LRK53_RS13745 0.27 -0.4 3,033,834 + LRK53_RS13745 0.27 +0.6 3,033,834 + LRK53_RS13745 0.27 +0.4 3,033,834 + LRK53_RS13745 0.27 -0.7 3,033,835 - LRK53_RS13745 0.27 -0.5 3,033,835 - LRK53_RS13745 0.27 -2.2 3,033,835 - LRK53_RS13745 0.27 -2.2 3,033,835 - LRK53_RS13745 0.27 +1.4 3,033,835 - LRK53_RS13745 0.27 -2.0 3,033,835 - LRK53_RS13745 0.27 -0.1 3,033,835 - LRK53_RS13745 0.27 -1.1 3,033,835 - LRK53_RS13745 0.27 -1.5 3,033,835 - LRK53_RS13745 0.27 +0.8 3,033,835 - LRK53_RS13745 0.27 -0.8 3,033,835 - LRK53_RS13745 0.27 -1.4 3,033,835 - LRK53_RS13745 0.27 -0.4 3,033,835 - LRK53_RS13745 0.27 -0.4 3,033,866 - LRK53_RS13745 0.28 -1.2 3,033,879 - LRK53_RS13745 0.29 +0.5 3,033,879 - LRK53_RS13745 0.29 -0.6 3,033,934 + LRK53_RS13745 0.31 -0.2 3,033,934 + LRK53_RS13745 0.31 -0.2 3,033,935 - LRK53_RS13745 0.32 -0.4 3,033,935 - LRK53_RS13745 0.32 -0.3 3,034,059 + LRK53_RS13745 0.37 -0.6 3,034,059 + LRK53_RS13745 0.37 +0.5 3,034,059 + LRK53_RS13745 0.37 -1.5 3,034,059 + LRK53_RS13745 0.37 -2.6 3,034,059 + LRK53_RS13745 0.37 +2.6 3,034,060 - LRK53_RS13745 0.37 +1.5 3,034,060 - LRK53_RS13745 0.37 +0.6
Or see this region's nucleotide sequence