Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13740

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS13730 and LRK53_RS13735 are separated by 141 nucleotidesLRK53_RS13735 and LRK53_RS13740 are separated by 164 nucleotidesLRK53_RS13740 and LRK53_RS13745 are separated by 80 nucleotides LRK53_RS13730: LRK53_RS13730 - hypothetical protein, at 3,030,541 to 3,032,226 _RS13730 LRK53_RS13735: LRK53_RS13735 - hypothetical protein, at 3,032,368 to 3,032,595 _RS13735 LRK53_RS13740: LRK53_RS13740 - hypothetical protein, at 3,032,760 to 3,033,155 _RS13740 LRK53_RS13745: LRK53_RS13745 - toll/interleukin-1 receptor domain-containing protein, at 3,033,236 to 3,035,452 _RS13745 Position (kb) 3032 3033 3034Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3031.787 kb on - strand, within LRK53_RS13730at 3031.815 kb on + strand, within LRK53_RS13730at 3031.815 kb on + strand, within LRK53_RS13730at 3031.833 kb on + strand, within LRK53_RS13730at 3031.834 kb on - strand, within LRK53_RS13730at 3031.835 kb on + strand, within LRK53_RS13730at 3031.835 kb on + strand, within LRK53_RS13730at 3031.835 kb on + strand, within LRK53_RS13730at 3031.835 kb on + strand, within LRK53_RS13730at 3031.835 kb on + strand, within LRK53_RS13730at 3031.836 kb on - strand, within LRK53_RS13730at 3031.836 kb on - strand, within LRK53_RS13730at 3031.836 kb on - strand, within LRK53_RS13730at 3031.836 kb on - strand, within LRK53_RS13730at 3031.854 kb on - strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.994 kb on + strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3031.995 kb on - strand, within LRK53_RS13730at 3032.187 kb on + strandat 3032.188 kb on - strandat 3032.250 kb on + strandat 3032.251 kb on - strandat 3032.251 kb on - strandat 3032.251 kb on - strandat 3032.331 kb on + strandat 3032.332 kb on - strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.761 kb on + strandat 3032.762 kb on - strandat 3032.762 kb on - strandat 3032.762 kb on - strandat 3032.762 kb on - strandat 3032.822 kb on - strand, within LRK53_RS13740at 3032.822 kb on - strand, within LRK53_RS13740at 3032.822 kb on - strand, within LRK53_RS13740at 3032.822 kb on - strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.854 kb on + strand, within LRK53_RS13740at 3032.855 kb on - strand, within LRK53_RS13740at 3032.855 kb on - strand, within LRK53_RS13740at 3032.855 kb on - strand, within LRK53_RS13740at 3032.855 kb on - strand, within LRK53_RS13740at 3032.855 kb on - strand, within LRK53_RS13740at 3033.289 kb on + strandat 3033.289 kb on + strandat 3033.289 kb on + strandat 3033.290 kb on - strandat 3033.300 kb on + strandat 3033.323 kb on + strandat 3033.323 kb on + strandat 3033.323 kb on + strandat 3033.323 kb on + strandat 3033.323 kb on + strandat 3033.323 kb on + strandat 3033.324 kb on - strandat 3033.324 kb on - strandat 3033.324 kb on - strandat 3033.362 kb on + strandat 3033.362 kb on + strandat 3033.362 kb on + strandat 3033.362 kb on + strandat 3033.363 kb on - strandat 3033.363 kb on - strandat 3033.363 kb on - strandat 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.834 kb on + strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.835 kb on - strand, within LRK53_RS13745at 3033.866 kb on - strand, within LRK53_RS13745at 3033.879 kb on - strand, within LRK53_RS13745at 3033.879 kb on - strand, within LRK53_RS13745at 3033.934 kb on + strand, within LRK53_RS13745at 3033.934 kb on + strand, within LRK53_RS13745at 3033.935 kb on - strand, within LRK53_RS13745at 3033.935 kb on - strand, within LRK53_RS13745at 3034.059 kb on + strand, within LRK53_RS13745at 3034.059 kb on + strand, within LRK53_RS13745at 3034.059 kb on + strand, within LRK53_RS13745at 3034.059 kb on + strand, within LRK53_RS13745at 3034.059 kb on + strand, within LRK53_RS13745at 3034.060 kb on - strand, within LRK53_RS13745at 3034.060 kb on - strand, within LRK53_RS13745

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
3,031,787 - LRK53_RS13730 0.74 -1.0
3,031,815 + LRK53_RS13730 0.76 -0.9
3,031,815 + LRK53_RS13730 0.76 -0.2
3,031,833 + LRK53_RS13730 0.77 -0.6
3,031,834 - LRK53_RS13730 0.77 +0.6
3,031,835 + LRK53_RS13730 0.77 +0.5
3,031,835 + LRK53_RS13730 0.77 -1.8
3,031,835 + LRK53_RS13730 0.77 -0.1
3,031,835 + LRK53_RS13730 0.77 +1.3
3,031,835 + LRK53_RS13730 0.77 -0.8
3,031,836 - LRK53_RS13730 0.77 +0.7
3,031,836 - LRK53_RS13730 0.77 -0.2
3,031,836 - LRK53_RS13730 0.77 -0.1
3,031,836 - LRK53_RS13730 0.77 -0.4
3,031,854 - LRK53_RS13730 0.78 -1.1
3,031,994 + LRK53_RS13730 0.86 -0.1
3,031,994 + LRK53_RS13730 0.86 +2.6
3,031,994 + LRK53_RS13730 0.86 -1.0
3,031,994 + LRK53_RS13730 0.86 +1.4
3,031,994 + LRK53_RS13730 0.86 +0.1
3,031,994 + LRK53_RS13730 0.86 -0.1
3,031,994 + LRK53_RS13730 0.86 -3.2
3,031,994 + LRK53_RS13730 0.86 -0.2
3,031,994 + LRK53_RS13730 0.86 -0.5
3,031,994 + LRK53_RS13730 0.86 -1.4
3,031,994 + LRK53_RS13730 0.86 -0.0
3,031,994 + LRK53_RS13730 0.86 -2.4
3,031,994 + LRK53_RS13730 0.86 -0.1
3,031,994 + LRK53_RS13730 0.86 -2.6
3,031,994 + LRK53_RS13730 0.86 -1.2
3,031,994 + LRK53_RS13730 0.86 +0.3
3,031,994 + LRK53_RS13730 0.86 -0.2
3,031,994 + LRK53_RS13730 0.86 -1.2
3,031,994 + LRK53_RS13730 0.86 +0.6
3,031,995 - LRK53_RS13730 0.86 +1.2
3,031,995 - LRK53_RS13730 0.86 +1.2
3,031,995 - LRK53_RS13730 0.86 +0.1
3,031,995 - LRK53_RS13730 0.86 +0.8
3,031,995 - LRK53_RS13730 0.86 +1.1
3,031,995 - LRK53_RS13730 0.86 -1.5
3,031,995 - LRK53_RS13730 0.86 +0.6
3,031,995 - LRK53_RS13730 0.86 -1.3
3,031,995 - LRK53_RS13730 0.86 +0.8
3,031,995 - LRK53_RS13730 0.86 -0.2
3,031,995 - LRK53_RS13730 0.86 -0.0
3,031,995 - LRK53_RS13730 0.86 +1.6
3,031,995 - LRK53_RS13730 0.86 +0.3
3,031,995 - LRK53_RS13730 0.86 -2.0
3,031,995 - LRK53_RS13730 0.86 +0.6
3,031,995 - LRK53_RS13730 0.86 +0.2
3,031,995 - LRK53_RS13730 0.86 +2.3
3,031,995 - LRK53_RS13730 0.86 -0.7
3,031,995 - LRK53_RS13730 0.86 -1.5
3,031,995 - LRK53_RS13730 0.86 -2.5
3,031,995 - LRK53_RS13730 0.86 +0.8
3,031,995 - LRK53_RS13730 0.86 -0.7
3,031,995 - LRK53_RS13730 0.86 -1.0
3,031,995 - LRK53_RS13730 0.86 +1.5
3,031,995 - LRK53_RS13730 0.86 -2.0
3,031,995 - LRK53_RS13730 0.86 -0.5
3,031,995 - LRK53_RS13730 0.86 +1.2
3,031,995 - LRK53_RS13730 0.86 -0.3
3,031,995 - LRK53_RS13730 0.86 -1.5
3,031,995 - LRK53_RS13730 0.86 -0.9
3,031,995 - LRK53_RS13730 0.86 -1.3
3,031,995 - LRK53_RS13730 0.86 -0.2
3,032,187 + -1.1
3,032,188 - -0.8
3,032,250 + +2.6
3,032,251 - -0.7
3,032,251 - -2.9
3,032,251 - -1.0
3,032,331 + +0.1
3,032,332 - +1.9
3,032,761 + -0.6
3,032,761 + +0.5
3,032,761 + -2.3
3,032,761 + -0.9
3,032,761 + +2.9
3,032,761 + -0.4
3,032,761 + +0.3
3,032,761 + -0.4
3,032,761 + -2.1
3,032,762 - +0.2
3,032,762 - +0.8
3,032,762 - +0.2
3,032,762 - -0.1
3,032,822 - LRK53_RS13740 0.16 -0.9
3,032,822 - LRK53_RS13740 0.16 -2.5
3,032,822 - LRK53_RS13740 0.16 -0.8
3,032,822 - LRK53_RS13740 0.16 +0.1
3,032,854 + LRK53_RS13740 0.24 -1.3
3,032,854 + LRK53_RS13740 0.24 -0.4
3,032,854 + LRK53_RS13740 0.24 -0.9
3,032,854 + LRK53_RS13740 0.24 +0.5
3,032,854 + LRK53_RS13740 0.24 -3.3
3,032,854 + LRK53_RS13740 0.24 +0.3
3,032,854 + LRK53_RS13740 0.24 -1.0
3,032,855 - LRK53_RS13740 0.24 -0.2
3,032,855 - LRK53_RS13740 0.24 -0.8
3,032,855 - LRK53_RS13740 0.24 -0.0
3,032,855 - LRK53_RS13740 0.24 -0.6
3,032,855 - LRK53_RS13740 0.24 -0.9
3,033,289 + -0.0
3,033,289 + -2.3
3,033,289 + +0.2
3,033,290 - +2.2
3,033,300 + -2.4
3,033,323 + +0.5
3,033,323 + +1.6
3,033,323 + -0.0
3,033,323 + +0.9
3,033,323 + -0.1
3,033,323 + +0.1
3,033,324 - +0.2
3,033,324 - +0.6
3,033,324 - -0.2
3,033,362 + -1.5
3,033,362 + -2.2
3,033,362 + +1.3
3,033,362 + +1.0
3,033,363 - -1.2
3,033,363 - -0.1
3,033,363 - -0.8
3,033,834 + LRK53_RS13745 0.27 +0.2
3,033,834 + LRK53_RS13745 0.27 +1.4
3,033,834 + LRK53_RS13745 0.27 -0.7
3,033,834 + LRK53_RS13745 0.27 -0.3
3,033,834 + LRK53_RS13745 0.27 -1.3
3,033,834 + LRK53_RS13745 0.27 -0.0
3,033,834 + LRK53_RS13745 0.27 +3.7
3,033,834 + LRK53_RS13745 0.27 -0.0
3,033,834 + LRK53_RS13745 0.27 -0.4
3,033,834 + LRK53_RS13745 0.27 +0.6
3,033,834 + LRK53_RS13745 0.27 +0.4
3,033,834 + LRK53_RS13745 0.27 -0.7
3,033,835 - LRK53_RS13745 0.27 -0.5
3,033,835 - LRK53_RS13745 0.27 -2.2
3,033,835 - LRK53_RS13745 0.27 -2.2
3,033,835 - LRK53_RS13745 0.27 +1.4
3,033,835 - LRK53_RS13745 0.27 -2.0
3,033,835 - LRK53_RS13745 0.27 -0.1
3,033,835 - LRK53_RS13745 0.27 -1.1
3,033,835 - LRK53_RS13745 0.27 -1.5
3,033,835 - LRK53_RS13745 0.27 +0.8
3,033,835 - LRK53_RS13745 0.27 -0.8
3,033,835 - LRK53_RS13745 0.27 -1.4
3,033,835 - LRK53_RS13745 0.27 -0.4
3,033,835 - LRK53_RS13745 0.27 -0.4
3,033,866 - LRK53_RS13745 0.28 -1.2
3,033,879 - LRK53_RS13745 0.29 +0.5
3,033,879 - LRK53_RS13745 0.29 -0.6
3,033,934 + LRK53_RS13745 0.31 -0.2
3,033,934 + LRK53_RS13745 0.31 -0.2
3,033,935 - LRK53_RS13745 0.32 -0.4
3,033,935 - LRK53_RS13745 0.32 -0.3
3,034,059 + LRK53_RS13745 0.37 -0.6
3,034,059 + LRK53_RS13745 0.37 +0.5
3,034,059 + LRK53_RS13745 0.37 -1.5
3,034,059 + LRK53_RS13745 0.37 -2.6
3,034,059 + LRK53_RS13745 0.37 +2.6
3,034,060 - LRK53_RS13745 0.37 +1.5
3,034,060 - LRK53_RS13745 0.37 +0.6

Or see this region's nucleotide sequence