Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13625

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS13615 and LRK53_RS13620 are separated by 654 nucleotidesLRK53_RS13620 and LRK53_RS13625 are separated by 78 nucleotidesLRK53_RS13625 and LRK53_RS13630 are separated by 269 nucleotides LRK53_RS13615: LRK53_RS13615 - methyltransferase domain-containing protein, at 3,002,305 to 3,003,129 _RS13615 LRK53_RS13620: LRK53_RS13620 - tRNA-Ser, at 3,003,784 to 3,003,876 _RS13620 LRK53_RS13625: LRK53_RS13625 - carbon storage regulator CsrA, at 3,003,955 to 3,004,158 _RS13625 LRK53_RS13630: LRK53_RS13630 - alanine--tRNA ligase, at 3,004,428 to 3,007,055 _RS13630 Position (kb) 3003 3004 3005Strain fitness (log2 ratio) -2 -1 0 1 2at 3003.004 kb on + strand, within LRK53_RS13615at 3003.005 kb on - strand, within LRK53_RS13615at 3003.005 kb on - strand, within LRK53_RS13615at 3003.005 kb on - strand, within LRK53_RS13615at 3003.005 kb on - strand, within LRK53_RS13615at 3003.005 kb on - strand, within LRK53_RS13615at 3003.022 kb on + strand, within LRK53_RS13615at 3003.023 kb on - strand, within LRK53_RS13615at 3003.366 kb on + strandat 3003.366 kb on + strandat 3003.366 kb on + strandat 3003.366 kb on + strandat 3003.366 kb on + strandat 3003.366 kb on + strandat 3003.748 kb on + strandat 3003.748 kb on + strandat 3003.748 kb on + strandat 3003.748 kb on + strandat 3003.748 kb on + strandat 3003.748 kb on + strandat 3003.749 kb on - strandat 3003.749 kb on - strandat 3003.749 kb on - strandat 3003.749 kb on - strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.780 kb on + strandat 3003.781 kb on - strandat 3003.781 kb on - strandat 3003.781 kb on - strandat 3003.781 kb on - strandat 3003.781 kb on - strandat 3003.935 kb on - strandat 3003.935 kb on - strandat 3003.935 kb on - strandat 3004.016 kb on + strand, within LRK53_RS13625at 3004.016 kb on + strand, within LRK53_RS13625at 3004.016 kb on + strand, within LRK53_RS13625at 3004.016 kb on + strand, within LRK53_RS13625at 3004.017 kb on - strand, within LRK53_RS13625at 3004.017 kb on - strand, within LRK53_RS13625at 3004.017 kb on - strand, within LRK53_RS13625at 3004.017 kb on - strand, within LRK53_RS13625at 3004.017 kb on - strand, within LRK53_RS13625at 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.165 kb on + strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.166 kb on - strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.172 kb on + strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.173 kb on - strandat 3004.264 kb on - strandat 3004.351 kb on - strandat 3004.351 kb on - strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.353 kb on + strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.354 kb on - strandat 3004.429 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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3,003,004 + LRK53_RS13615 0.85 +0.4
3,003,005 - LRK53_RS13615 0.85 -0.9
3,003,005 - LRK53_RS13615 0.85 -1.5
3,003,005 - LRK53_RS13615 0.85 +1.7
3,003,005 - LRK53_RS13615 0.85 -0.3
3,003,005 - LRK53_RS13615 0.85 -1.0
3,003,022 + LRK53_RS13615 0.87 -1.8
3,003,023 - LRK53_RS13615 0.87 -0.0
3,003,366 + -1.0
3,003,366 + +0.1
3,003,366 + +1.2
3,003,366 + -0.7
3,003,366 + +1.4
3,003,366 + -0.5
3,003,748 + +0.8
3,003,748 + +0.4
3,003,748 + -1.8
3,003,748 + -1.4
3,003,748 + +0.2
3,003,748 + -2.1
3,003,749 - +0.6
3,003,749 - -0.3
3,003,749 - -0.3
3,003,749 - +0.6
3,003,780 + -1.5
3,003,780 + -0.3
3,003,780 + -0.8
3,003,780 + -1.2
3,003,780 + -0.7
3,003,780 + -1.0
3,003,780 + +1.1
3,003,781 - -0.1
3,003,781 - -0.6
3,003,781 - -0.1
3,003,781 - -0.6
3,003,781 - -1.1
3,003,935 - -0.7
3,003,935 - +0.7
3,003,935 - -0.5
3,004,016 + LRK53_RS13625 0.30 -0.8
3,004,016 + LRK53_RS13625 0.30 -0.2
3,004,016 + LRK53_RS13625 0.30 -1.7
3,004,016 + LRK53_RS13625 0.30 -1.5
3,004,017 - LRK53_RS13625 0.30 +0.7
3,004,017 - LRK53_RS13625 0.30 -1.7
3,004,017 - LRK53_RS13625 0.30 +0.5
3,004,017 - LRK53_RS13625 0.30 -0.2
3,004,017 - LRK53_RS13625 0.30 -1.1
3,004,165 + +0.6
3,004,165 + -0.1
3,004,165 + +0.8
3,004,165 + -1.4
3,004,165 + +0.1
3,004,165 + +1.6
3,004,165 + +0.0
3,004,165 + -0.9
3,004,165 + -1.0
3,004,166 - -0.0
3,004,166 - -0.2
3,004,166 - -1.4
3,004,166 - +0.8
3,004,166 - -0.4
3,004,166 - +1.0
3,004,166 - +0.2
3,004,166 - +1.3
3,004,172 + -2.1
3,004,172 + +2.1
3,004,172 + +0.1
3,004,172 + -0.0
3,004,172 + +1.8
3,004,172 + +1.2
3,004,172 + -0.4
3,004,172 + +0.8
3,004,172 + +0.5
3,004,172 + -1.1
3,004,172 + +0.8
3,004,172 + +1.2
3,004,173 - -0.5
3,004,173 - +0.0
3,004,173 - -1.4
3,004,173 - +1.5
3,004,173 - -0.7
3,004,173 - +0.2
3,004,173 - -0.8
3,004,173 - -0.0
3,004,173 - -0.3
3,004,173 - -0.8
3,004,173 - +1.0
3,004,264 - -0.8
3,004,351 - +0.6
3,004,351 - -0.8
3,004,353 + -0.5
3,004,353 + +0.7
3,004,353 + -0.2
3,004,353 + -1.0
3,004,353 + -0.6
3,004,353 + +0.0
3,004,353 + +0.6
3,004,353 + -0.4
3,004,353 + +0.3
3,004,353 + -2.1
3,004,353 + -0.0
3,004,353 + -1.4
3,004,353 + -2.6
3,004,354 - +0.3
3,004,354 - -1.8
3,004,354 - -0.6
3,004,354 - -0.7
3,004,354 - -0.8
3,004,354 - -0.7
3,004,354 - +0.2
3,004,354 - -0.2
3,004,354 - -0.1
3,004,354 - -0.9
3,004,354 - -1.4
3,004,354 - -0.0
3,004,354 - +1.0
3,004,354 - -1.1
3,004,354 - -0.4
3,004,354 - +0.0
3,004,354 - -0.2
3,004,354 - +0.8
3,004,354 - +0.2
3,004,429 + -0.0

Or see this region's nucleotide sequence