Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS12795 and LRK53_RS12800 are separated by 122 nucleotides LRK53_RS12800 and LRK53_RS12805 are separated by 91 nucleotides
LRK53_RS12795: LRK53_RS12795 - quinone-dependent dihydroorotate dehydrogenase, at 2,829,633 to 2,830,670
_RS12795
LRK53_RS12800: LRK53_RS12800 - DUF4190 domain-containing protein, at 2,830,793 to 2,831,095
_RS12800
LRK53_RS12805: LRK53_RS12805 - aldehyde dehydrogenase family protein, at 2,831,187 to 2,832,722
_RS12805
Position (kb)
2830
2831
2832 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2830.667 kb on - strand at 2830.667 kb on - strand at 2830.667 kb on - strand at 2830.667 kb on - strand at 2830.878 kb on + strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2830.879 kb on - strand, within LRK53_RS12800 at 2831.088 kb on + strand at 2831.088 kb on + strand at 2831.088 kb on + strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.089 kb on - strand at 2831.139 kb on - strand at 2831.139 kb on - strand at 2831.139 kb on - strand at 2831.139 kb on - strand at 2831.139 kb on - strand at 2831.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,830,667 - +1.1 2,830,667 - -1.3 2,830,667 - -0.1 2,830,667 - -0.2 2,830,878 + LRK53_RS12800 0.28 -1.2 2,830,879 - LRK53_RS12800 0.28 -0.4 2,830,879 - LRK53_RS12800 0.28 -1.3 2,830,879 - LRK53_RS12800 0.28 -0.6 2,830,879 - LRK53_RS12800 0.28 +1.3 2,830,879 - LRK53_RS12800 0.28 -1.5 2,830,879 - LRK53_RS12800 0.28 -0.2 2,830,879 - LRK53_RS12800 0.28 +0.7 2,831,088 + +2.6 2,831,088 + -0.9 2,831,088 + -1.2 2,831,089 - -1.4 2,831,089 - -0.1 2,831,089 - +0.6 2,831,089 - -0.8 2,831,089 - -0.7 2,831,089 - +2.5 2,831,089 - -2.3 2,831,089 - +0.7 2,831,089 - -2.2 2,831,089 - -2.0 2,831,089 - -0.6 2,831,089 - -2.2 2,831,089 - -0.7 2,831,089 - +0.2 2,831,089 - -0.0 2,831,089 - +0.1 2,831,089 - -0.5 2,831,139 - -1.7 2,831,139 - +0.5 2,831,139 - +0.3 2,831,139 - -1.7 2,831,139 - -0.1 2,831,139 - +1.0
Or see this region's nucleotide sequence