Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS12730 and LRK53_RS12735 overlap by 4 nucleotides LRK53_RS12735 and LRK53_RS12740 are separated by 71 nucleotides LRK53_RS12740 and LRK53_RS12745 overlap by 4 nucleotides
LRK53_RS12730: LRK53_RS12730 - heme lyase CcmF/NrfE family subunit, at 2,814,363 to 2,816,342
_RS12730
LRK53_RS12735: LRK53_RS12735 - DsbE family thiol:disulfide interchange protein, at 2,816,339 to 2,816,881
_RS12735
LRK53_RS12740: LRK53_RS12740 - cytochrome c-type biogenesis protein CcmH, at 2,816,953 to 2,817,399
_RS12740
LRK53_RS12745: LRK53_RS12745 - cytochrome C biogenesis protein CcmI, at 2,817,396 to 2,818,448
_RS12745
Position (kb)
2816
2817
2818 Strain fitness (log2 ratio)
-2
-1
0
1 at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2816.948 kb on + strand at 2817.302 kb on + strand, within LRK53_RS12740 at 2817.302 kb on + strand, within LRK53_RS12740 at 2817.302 kb on + strand, within LRK53_RS12740 at 2817.302 kb on + strand, within LRK53_RS12740 at 2817.302 kb on + strand, within LRK53_RS12740 at 2817.561 kb on + strand, within LRK53_RS12745
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,816,948 + -0.2 2,816,948 + -0.5 2,816,948 + -0.6 2,816,948 + +1.3 2,816,948 + -2.5 2,816,948 + +1.5 2,816,948 + +0.1 2,816,948 + +0.2 2,816,948 + +0.2 2,817,302 + LRK53_RS12740 0.78 -0.6 2,817,302 + LRK53_RS12740 0.78 -1.8 2,817,302 + LRK53_RS12740 0.78 -1.4 2,817,302 + LRK53_RS12740 0.78 -0.4 2,817,302 + LRK53_RS12740 0.78 -2.2 2,817,561 + LRK53_RS12745 0.16 +1.4
Or see this region's nucleotide sequence