Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS12320 and LRK53_RS12325 are separated by 145 nucleotides LRK53_RS12325 and LRK53_RS12330 are separated by 86 nucleotides
LRK53_RS12320: LRK53_RS12320 - CTP synthase, at 2,732,362 to 2,734,032
_RS12320
LRK53_RS12325: LRK53_RS12325 - aminopeptidase P family protein, at 2,734,178 to 2,735,977
_RS12325
LRK53_RS12330: LRK53_RS12330 - cysteine synthase family protein, at 2,736,064 to 2,737,044
_RS12330
Position (kb)
2734
2735
2736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2734.166 kb on + strand at 2734.166 kb on + strand at 2734.166 kb on + strand at 2734.166 kb on + strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.167 kb on - strand at 2734.248 kb on + strand at 2734.248 kb on + strand at 2734.248 kb on + strand at 2734.283 kb on + strand at 2734.284 kb on - strand at 2734.284 kb on - strand at 2734.284 kb on - strand at 2734.284 kb on - strand at 2734.284 kb on - strand at 2734.391 kb on + strand, within LRK53_RS12325 at 2734.391 kb on + strand, within LRK53_RS12325 at 2734.391 kb on + strand, within LRK53_RS12325 at 2734.940 kb on + strand, within LRK53_RS12325 at 2734.940 kb on + strand, within LRK53_RS12325 at 2734.940 kb on + strand, within LRK53_RS12325 at 2734.940 kb on + strand, within LRK53_RS12325 at 2734.941 kb on - strand, within LRK53_RS12325 at 2734.941 kb on - strand, within LRK53_RS12325 at 2735.390 kb on + strand, within LRK53_RS12325 at 2735.390 kb on + strand, within LRK53_RS12325 at 2735.391 kb on - strand, within LRK53_RS12325 at 2735.391 kb on - strand, within LRK53_RS12325 at 2735.391 kb on - strand, within LRK53_RS12325 at 2735.391 kb on - strand, within LRK53_RS12325 at 2735.580 kb on - strand, within LRK53_RS12325 at 2735.580 kb on - strand, within LRK53_RS12325 at 2735.609 kb on + strand, within LRK53_RS12325 at 2735.610 kb on - strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.717 kb on + strand, within LRK53_RS12325 at 2735.718 kb on + strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.718 kb on - strand, within LRK53_RS12325 at 2735.891 kb on + strand at 2735.891 kb on + strand at 2735.891 kb on + strand at 2735.891 kb on + strand at 2735.892 kb on - strand at 2735.892 kb on - strand at 2735.892 kb on - strand at 2735.892 kb on - strand at 2735.976 kb on - strand at 2735.976 kb on - strand at 2735.976 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2735.987 kb on - strand at 2736.113 kb on + strand at 2736.113 kb on + strand at 2736.113 kb on + strand at 2736.113 kb on + strand at 2736.113 kb on + strand at 2736.113 kb on + strand at 2736.114 kb on - strand at 2736.114 kb on - strand at 2736.114 kb on - strand at 2736.114 kb on - strand at 2736.125 kb on + strand at 2736.125 kb on + strand at 2736.125 kb on + strand at 2736.125 kb on + strand at 2736.125 kb on + strand at 2736.126 kb on - strand at 2736.126 kb on - strand at 2736.126 kb on - strand at 2736.242 kb on + strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.243 kb on - strand, within LRK53_RS12330 at 2736.357 kb on + strand, within LRK53_RS12330 at 2736.358 kb on - strand, within LRK53_RS12330 at 2736.358 kb on - strand, within LRK53_RS12330 at 2736.358 kb on - strand, within LRK53_RS12330 at 2736.358 kb on - strand, within LRK53_RS12330 at 2736.369 kb on + strand, within LRK53_RS12330 at 2736.370 kb on - strand, within LRK53_RS12330 at 2736.614 kb on + strand, within LRK53_RS12330 at 2736.614 kb on + strand, within LRK53_RS12330 at 2736.614 kb on + strand, within LRK53_RS12330 at 2736.615 kb on - strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.875 kb on + strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.876 kb on - strand, within LRK53_RS12330 at 2736.932 kb on + strand, within LRK53_RS12330 at 2736.933 kb on - strand, within LRK53_RS12330
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,734,166 + -0.9 2,734,166 + -1.1 2,734,166 + +0.3 2,734,166 + -0.0 2,734,167 - +0.2 2,734,167 - +2.0 2,734,167 - +0.6 2,734,167 - -0.1 2,734,167 - +1.7 2,734,167 - -1.3 2,734,167 - -2.1 2,734,167 - +1.0 2,734,167 - -0.8 2,734,167 - +0.5 2,734,248 + +0.9 2,734,248 + +1.4 2,734,248 + -2.0 2,734,283 + -1.1 2,734,284 - -0.4 2,734,284 - -1.9 2,734,284 - -0.4 2,734,284 - -1.0 2,734,284 - +0.6 2,734,391 + LRK53_RS12325 0.12 -1.1 2,734,391 + LRK53_RS12325 0.12 +0.2 2,734,391 + LRK53_RS12325 0.12 -0.2 2,734,940 + LRK53_RS12325 0.42 -0.5 2,734,940 + LRK53_RS12325 0.42 -1.1 2,734,940 + LRK53_RS12325 0.42 -3.2 2,734,940 + LRK53_RS12325 0.42 -0.3 2,734,941 - LRK53_RS12325 0.42 -2.1 2,734,941 - LRK53_RS12325 0.42 -2.2 2,735,390 + LRK53_RS12325 0.67 -0.9 2,735,390 + LRK53_RS12325 0.67 +0.1 2,735,391 - LRK53_RS12325 0.67 +0.9 2,735,391 - LRK53_RS12325 0.67 -2.8 2,735,391 - LRK53_RS12325 0.67 -0.3 2,735,391 - LRK53_RS12325 0.67 +1.2 2,735,580 - LRK53_RS12325 0.78 -2.7 2,735,580 - LRK53_RS12325 0.78 -1.2 2,735,609 + LRK53_RS12325 0.80 -2.7 2,735,610 - LRK53_RS12325 0.80 -2.5 2,735,717 + LRK53_RS12325 0.85 -0.4 2,735,717 + LRK53_RS12325 0.85 -0.4 2,735,717 + LRK53_RS12325 0.85 -0.5 2,735,717 + LRK53_RS12325 0.85 -2.3 2,735,717 + LRK53_RS12325 0.85 -0.9 2,735,717 + LRK53_RS12325 0.85 -0.7 2,735,717 + LRK53_RS12325 0.85 -2.1 2,735,717 + LRK53_RS12325 0.85 -1.2 2,735,717 + LRK53_RS12325 0.85 +1.3 2,735,717 + LRK53_RS12325 0.85 -1.6 2,735,717 + LRK53_RS12325 0.85 -1.9 2,735,717 + LRK53_RS12325 0.85 -0.1 2,735,717 + LRK53_RS12325 0.85 -1.3 2,735,717 + LRK53_RS12325 0.85 -0.8 2,735,717 + LRK53_RS12325 0.85 +0.7 2,735,717 + LRK53_RS12325 0.85 -0.8 2,735,718 + LRK53_RS12325 0.86 +0.5 2,735,718 - LRK53_RS12325 0.86 -0.7 2,735,718 - LRK53_RS12325 0.86 -2.2 2,735,718 - LRK53_RS12325 0.86 -1.1 2,735,718 - LRK53_RS12325 0.86 -0.1 2,735,718 - LRK53_RS12325 0.86 +1.7 2,735,718 - LRK53_RS12325 0.86 -1.7 2,735,718 - LRK53_RS12325 0.86 -0.1 2,735,718 - LRK53_RS12325 0.86 -2.3 2,735,718 - LRK53_RS12325 0.86 -1.3 2,735,891 + -1.2 2,735,891 + -0.6 2,735,891 + +0.2 2,735,891 + +1.2 2,735,892 - -0.5 2,735,892 - +0.7 2,735,892 - -1.1 2,735,892 - +0.8 2,735,976 - +0.3 2,735,976 - -0.9 2,735,976 - +1.8 2,735,987 - -1.6 2,735,987 - -0.5 2,735,987 - +1.4 2,735,987 - -1.2 2,735,987 - -0.5 2,735,987 - +0.7 2,735,987 - +0.1 2,735,987 - -0.8 2,736,113 + -0.6 2,736,113 + -1.7 2,736,113 + +0.9 2,736,113 + -0.3 2,736,113 + -0.8 2,736,113 + +0.2 2,736,114 - -0.4 2,736,114 - +0.2 2,736,114 - +0.2 2,736,114 - -0.3 2,736,125 + -0.7 2,736,125 + -0.3 2,736,125 + -0.9 2,736,125 + -0.9 2,736,125 + -0.1 2,736,126 - +2.1 2,736,126 - -1.2 2,736,126 - -0.8 2,736,242 + LRK53_RS12330 0.18 +2.0 2,736,243 - LRK53_RS12330 0.18 -1.1 2,736,243 - LRK53_RS12330 0.18 +0.4 2,736,243 - LRK53_RS12330 0.18 -0.8 2,736,243 - LRK53_RS12330 0.18 +0.2 2,736,243 - LRK53_RS12330 0.18 -0.9 2,736,243 - LRK53_RS12330 0.18 -0.7 2,736,243 - LRK53_RS12330 0.18 -1.4 2,736,357 + LRK53_RS12330 0.30 -0.6 2,736,358 - LRK53_RS12330 0.30 -1.0 2,736,358 - LRK53_RS12330 0.30 -0.8 2,736,358 - LRK53_RS12330 0.30 +0.5 2,736,358 - LRK53_RS12330 0.30 -0.1 2,736,369 + LRK53_RS12330 0.31 -0.9 2,736,370 - LRK53_RS12330 0.31 +0.2 2,736,614 + LRK53_RS12330 0.56 -1.1 2,736,614 + LRK53_RS12330 0.56 -0.5 2,736,614 + LRK53_RS12330 0.56 -1.5 2,736,615 - LRK53_RS12330 0.56 -0.6 2,736,875 + LRK53_RS12330 0.83 -0.6 2,736,875 + LRK53_RS12330 0.83 -0.5 2,736,875 + LRK53_RS12330 0.83 -1.2 2,736,875 + LRK53_RS12330 0.83 +0.7 2,736,875 + LRK53_RS12330 0.83 +0.7 2,736,875 + LRK53_RS12330 0.83 +0.3 2,736,875 + LRK53_RS12330 0.83 -0.6 2,736,875 + LRK53_RS12330 0.83 +0.3 2,736,875 + LRK53_RS12330 0.83 -0.9 2,736,875 + LRK53_RS12330 0.83 -0.3 2,736,875 + LRK53_RS12330 0.83 -0.2 2,736,875 + LRK53_RS12330 0.83 -0.2 2,736,875 + LRK53_RS12330 0.83 +1.5 2,736,876 - LRK53_RS12330 0.83 +1.7 2,736,876 - LRK53_RS12330 0.83 +0.1 2,736,876 - LRK53_RS12330 0.83 -2.6 2,736,876 - LRK53_RS12330 0.83 -1.1 2,736,876 - LRK53_RS12330 0.83 -0.4 2,736,876 - LRK53_RS12330 0.83 -1.5 2,736,876 - LRK53_RS12330 0.83 +0.5 2,736,876 - LRK53_RS12330 0.83 -0.1 2,736,876 - LRK53_RS12330 0.83 +0.1 2,736,876 - LRK53_RS12330 0.83 -2.6 2,736,876 - LRK53_RS12330 0.83 -0.0 2,736,876 - LRK53_RS12330 0.83 -0.7 2,736,876 - LRK53_RS12330 0.83 -0.1 2,736,876 - LRK53_RS12330 0.83 -0.9 2,736,876 - LRK53_RS12330 0.83 -0.6 2,736,876 - LRK53_RS12330 0.83 -0.1 2,736,876 - LRK53_RS12330 0.83 +0.0 2,736,876 - LRK53_RS12330 0.83 -1.4 2,736,876 - LRK53_RS12330 0.83 -0.4 2,736,932 + LRK53_RS12330 0.88 -0.2 2,736,933 - LRK53_RS12330 0.89 +0.1
Or see this region's nucleotide sequence