Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12325

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS12320 and LRK53_RS12325 are separated by 145 nucleotidesLRK53_RS12325 and LRK53_RS12330 are separated by 86 nucleotides LRK53_RS12320: LRK53_RS12320 - CTP synthase, at 2,732,362 to 2,734,032 _RS12320 LRK53_RS12325: LRK53_RS12325 - aminopeptidase P family protein, at 2,734,178 to 2,735,977 _RS12325 LRK53_RS12330: LRK53_RS12330 - cysteine synthase family protein, at 2,736,064 to 2,737,044 _RS12330 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2734.166 kb on + strandat 2734.166 kb on + strandat 2734.166 kb on + strandat 2734.166 kb on + strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.167 kb on - strandat 2734.248 kb on + strandat 2734.248 kb on + strandat 2734.248 kb on + strandat 2734.283 kb on + strandat 2734.284 kb on - strandat 2734.284 kb on - strandat 2734.284 kb on - strandat 2734.284 kb on - strandat 2734.284 kb on - strandat 2734.391 kb on + strand, within LRK53_RS12325at 2734.391 kb on + strand, within LRK53_RS12325at 2734.391 kb on + strand, within LRK53_RS12325at 2734.940 kb on + strand, within LRK53_RS12325at 2734.940 kb on + strand, within LRK53_RS12325at 2734.940 kb on + strand, within LRK53_RS12325at 2734.940 kb on + strand, within LRK53_RS12325at 2734.941 kb on - strand, within LRK53_RS12325at 2734.941 kb on - strand, within LRK53_RS12325at 2735.390 kb on + strand, within LRK53_RS12325at 2735.390 kb on + strand, within LRK53_RS12325at 2735.391 kb on - strand, within LRK53_RS12325at 2735.391 kb on - strand, within LRK53_RS12325at 2735.391 kb on - strand, within LRK53_RS12325at 2735.391 kb on - strand, within LRK53_RS12325at 2735.580 kb on - strand, within LRK53_RS12325at 2735.580 kb on - strand, within LRK53_RS12325at 2735.609 kb on + strand, within LRK53_RS12325at 2735.610 kb on - strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.717 kb on + strand, within LRK53_RS12325at 2735.718 kb on + strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.718 kb on - strand, within LRK53_RS12325at 2735.891 kb on + strandat 2735.891 kb on + strandat 2735.891 kb on + strandat 2735.891 kb on + strandat 2735.892 kb on - strandat 2735.892 kb on - strandat 2735.892 kb on - strandat 2735.892 kb on - strandat 2735.976 kb on - strandat 2735.976 kb on - strandat 2735.976 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2735.987 kb on - strandat 2736.113 kb on + strandat 2736.113 kb on + strandat 2736.113 kb on + strandat 2736.113 kb on + strandat 2736.113 kb on + strandat 2736.113 kb on + strandat 2736.114 kb on - strandat 2736.114 kb on - strandat 2736.114 kb on - strandat 2736.114 kb on - strandat 2736.125 kb on + strandat 2736.125 kb on + strandat 2736.125 kb on + strandat 2736.125 kb on + strandat 2736.125 kb on + strandat 2736.126 kb on - strandat 2736.126 kb on - strandat 2736.126 kb on - strandat 2736.242 kb on + strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.243 kb on - strand, within LRK53_RS12330at 2736.357 kb on + strand, within LRK53_RS12330at 2736.358 kb on - strand, within LRK53_RS12330at 2736.358 kb on - strand, within LRK53_RS12330at 2736.358 kb on - strand, within LRK53_RS12330at 2736.358 kb on - strand, within LRK53_RS12330at 2736.369 kb on + strand, within LRK53_RS12330at 2736.370 kb on - strand, within LRK53_RS12330at 2736.614 kb on + strand, within LRK53_RS12330at 2736.614 kb on + strand, within LRK53_RS12330at 2736.614 kb on + strand, within LRK53_RS12330at 2736.615 kb on - strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.875 kb on + strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.876 kb on - strand, within LRK53_RS12330at 2736.932 kb on + strand, within LRK53_RS12330at 2736.933 kb on - strand, within LRK53_RS12330

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,734,166 + -0.9
2,734,166 + -1.1
2,734,166 + +0.3
2,734,166 + -0.0
2,734,167 - +0.2
2,734,167 - +2.0
2,734,167 - +0.6
2,734,167 - -0.1
2,734,167 - +1.7
2,734,167 - -1.3
2,734,167 - -2.1
2,734,167 - +1.0
2,734,167 - -0.8
2,734,167 - +0.5
2,734,248 + +0.9
2,734,248 + +1.4
2,734,248 + -2.0
2,734,283 + -1.1
2,734,284 - -0.4
2,734,284 - -1.9
2,734,284 - -0.4
2,734,284 - -1.0
2,734,284 - +0.6
2,734,391 + LRK53_RS12325 0.12 -1.1
2,734,391 + LRK53_RS12325 0.12 +0.2
2,734,391 + LRK53_RS12325 0.12 -0.2
2,734,940 + LRK53_RS12325 0.42 -0.5
2,734,940 + LRK53_RS12325 0.42 -1.1
2,734,940 + LRK53_RS12325 0.42 -3.2
2,734,940 + LRK53_RS12325 0.42 -0.3
2,734,941 - LRK53_RS12325 0.42 -2.1
2,734,941 - LRK53_RS12325 0.42 -2.2
2,735,390 + LRK53_RS12325 0.67 -0.9
2,735,390 + LRK53_RS12325 0.67 +0.1
2,735,391 - LRK53_RS12325 0.67 +0.9
2,735,391 - LRK53_RS12325 0.67 -2.8
2,735,391 - LRK53_RS12325 0.67 -0.3
2,735,391 - LRK53_RS12325 0.67 +1.2
2,735,580 - LRK53_RS12325 0.78 -2.7
2,735,580 - LRK53_RS12325 0.78 -1.2
2,735,609 + LRK53_RS12325 0.80 -2.7
2,735,610 - LRK53_RS12325 0.80 -2.5
2,735,717 + LRK53_RS12325 0.85 -0.4
2,735,717 + LRK53_RS12325 0.85 -0.4
2,735,717 + LRK53_RS12325 0.85 -0.5
2,735,717 + LRK53_RS12325 0.85 -2.3
2,735,717 + LRK53_RS12325 0.85 -0.9
2,735,717 + LRK53_RS12325 0.85 -0.7
2,735,717 + LRK53_RS12325 0.85 -2.1
2,735,717 + LRK53_RS12325 0.85 -1.2
2,735,717 + LRK53_RS12325 0.85 +1.3
2,735,717 + LRK53_RS12325 0.85 -1.6
2,735,717 + LRK53_RS12325 0.85 -1.9
2,735,717 + LRK53_RS12325 0.85 -0.1
2,735,717 + LRK53_RS12325 0.85 -1.3
2,735,717 + LRK53_RS12325 0.85 -0.8
2,735,717 + LRK53_RS12325 0.85 +0.7
2,735,717 + LRK53_RS12325 0.85 -0.8
2,735,718 + LRK53_RS12325 0.86 +0.5
2,735,718 - LRK53_RS12325 0.86 -0.7
2,735,718 - LRK53_RS12325 0.86 -2.2
2,735,718 - LRK53_RS12325 0.86 -1.1
2,735,718 - LRK53_RS12325 0.86 -0.1
2,735,718 - LRK53_RS12325 0.86 +1.7
2,735,718 - LRK53_RS12325 0.86 -1.7
2,735,718 - LRK53_RS12325 0.86 -0.1
2,735,718 - LRK53_RS12325 0.86 -2.3
2,735,718 - LRK53_RS12325 0.86 -1.3
2,735,891 + -1.2
2,735,891 + -0.6
2,735,891 + +0.2
2,735,891 + +1.2
2,735,892 - -0.5
2,735,892 - +0.7
2,735,892 - -1.1
2,735,892 - +0.8
2,735,976 - +0.3
2,735,976 - -0.9
2,735,976 - +1.8
2,735,987 - -1.6
2,735,987 - -0.5
2,735,987 - +1.4
2,735,987 - -1.2
2,735,987 - -0.5
2,735,987 - +0.7
2,735,987 - +0.1
2,735,987 - -0.8
2,736,113 + -0.6
2,736,113 + -1.7
2,736,113 + +0.9
2,736,113 + -0.3
2,736,113 + -0.8
2,736,113 + +0.2
2,736,114 - -0.4
2,736,114 - +0.2
2,736,114 - +0.2
2,736,114 - -0.3
2,736,125 + -0.7
2,736,125 + -0.3
2,736,125 + -0.9
2,736,125 + -0.9
2,736,125 + -0.1
2,736,126 - +2.1
2,736,126 - -1.2
2,736,126 - -0.8
2,736,242 + LRK53_RS12330 0.18 +2.0
2,736,243 - LRK53_RS12330 0.18 -1.1
2,736,243 - LRK53_RS12330 0.18 +0.4
2,736,243 - LRK53_RS12330 0.18 -0.8
2,736,243 - LRK53_RS12330 0.18 +0.2
2,736,243 - LRK53_RS12330 0.18 -0.9
2,736,243 - LRK53_RS12330 0.18 -0.7
2,736,243 - LRK53_RS12330 0.18 -1.4
2,736,357 + LRK53_RS12330 0.30 -0.6
2,736,358 - LRK53_RS12330 0.30 -1.0
2,736,358 - LRK53_RS12330 0.30 -0.8
2,736,358 - LRK53_RS12330 0.30 +0.5
2,736,358 - LRK53_RS12330 0.30 -0.1
2,736,369 + LRK53_RS12330 0.31 -0.9
2,736,370 - LRK53_RS12330 0.31 +0.2
2,736,614 + LRK53_RS12330 0.56 -1.1
2,736,614 + LRK53_RS12330 0.56 -0.5
2,736,614 + LRK53_RS12330 0.56 -1.5
2,736,615 - LRK53_RS12330 0.56 -0.6
2,736,875 + LRK53_RS12330 0.83 -0.6
2,736,875 + LRK53_RS12330 0.83 -0.5
2,736,875 + LRK53_RS12330 0.83 -1.2
2,736,875 + LRK53_RS12330 0.83 +0.7
2,736,875 + LRK53_RS12330 0.83 +0.7
2,736,875 + LRK53_RS12330 0.83 +0.3
2,736,875 + LRK53_RS12330 0.83 -0.6
2,736,875 + LRK53_RS12330 0.83 +0.3
2,736,875 + LRK53_RS12330 0.83 -0.9
2,736,875 + LRK53_RS12330 0.83 -0.3
2,736,875 + LRK53_RS12330 0.83 -0.2
2,736,875 + LRK53_RS12330 0.83 -0.2
2,736,875 + LRK53_RS12330 0.83 +1.5
2,736,876 - LRK53_RS12330 0.83 +1.7
2,736,876 - LRK53_RS12330 0.83 +0.1
2,736,876 - LRK53_RS12330 0.83 -2.6
2,736,876 - LRK53_RS12330 0.83 -1.1
2,736,876 - LRK53_RS12330 0.83 -0.4
2,736,876 - LRK53_RS12330 0.83 -1.5
2,736,876 - LRK53_RS12330 0.83 +0.5
2,736,876 - LRK53_RS12330 0.83 -0.1
2,736,876 - LRK53_RS12330 0.83 +0.1
2,736,876 - LRK53_RS12330 0.83 -2.6
2,736,876 - LRK53_RS12330 0.83 -0.0
2,736,876 - LRK53_RS12330 0.83 -0.7
2,736,876 - LRK53_RS12330 0.83 -0.1
2,736,876 - LRK53_RS12330 0.83 -0.9
2,736,876 - LRK53_RS12330 0.83 -0.6
2,736,876 - LRK53_RS12330 0.83 -0.1
2,736,876 - LRK53_RS12330 0.83 +0.0
2,736,876 - LRK53_RS12330 0.83 -1.4
2,736,876 - LRK53_RS12330 0.83 -0.4
2,736,932 + LRK53_RS12330 0.88 -0.2
2,736,933 - LRK53_RS12330 0.89 +0.1

Or see this region's nucleotide sequence