Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS12235 and LRK53_RS12240 overlap by 8 nucleotides LRK53_RS12240 and LRK53_RS12245 are separated by 82 nucleotides LRK53_RS12245 and LRK53_RS12250 overlap by 1 nucleotides LRK53_RS12250 and LRK53_RS12255 are separated by 15 nucleotides
LRK53_RS12235: LRK53_RS12235 - ATP-dependent zinc metalloprotease FtsH, at 2,717,380 to 2,719,338
_RS12235
LRK53_RS12240: LRK53_RS12240 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 2,719,331 to 2,719,984
_RS12240
LRK53_RS12245: LRK53_RS12245 - ribosome assembly RNA-binding protein YhbY, at 2,720,067 to 2,720,363
_RS12245
LRK53_RS12250: LRK53_RS12250 - Mth938-like domain-containing protein, at 2,720,363 to 2,720,740
_RS12250
LRK53_RS12255: LRK53_RS12255 - peptidoglycan DD-metalloendopeptidase family protein, at 2,720,756 to 2,721,754
_RS12255
Position (kb)
2720
2721 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 2720.027 kb on - strand at 2720.027 kb on - strand at 2720.027 kb on - strand at 2720.330 kb on + strand, within LRK53_RS12245 at 2720.330 kb on + strand, within LRK53_RS12245 at 2720.331 kb on - strand, within LRK53_RS12245 at 2720.331 kb on - strand, within LRK53_RS12245 at 2720.331 kb on - strand, within LRK53_RS12245 at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.399 kb on + strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.400 kb on - strand at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.565 kb on + strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.566 kb on - strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.568 kb on + strand, within LRK53_RS12250 at 2720.569 kb on - strand, within LRK53_RS12250 at 2720.569 kb on - strand, within LRK53_RS12250 at 2720.569 kb on - strand, within LRK53_RS12250 at 2720.569 kb on - strand, within LRK53_RS12250 at 2720.569 kb on - strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.678 kb on + strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250 at 2720.679 kb on - strand, within LRK53_RS12250
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,720,027 - +1.2 2,720,027 - -0.7 2,720,027 - +0.3 2,720,330 + LRK53_RS12245 0.89 +0.4 2,720,330 + LRK53_RS12245 0.89 -0.6 2,720,331 - LRK53_RS12245 0.89 -1.7 2,720,331 - LRK53_RS12245 0.89 +0.3 2,720,331 - LRK53_RS12245 0.89 +1.1 2,720,399 + -0.7 2,720,399 + +1.2 2,720,399 + -1.6 2,720,399 + -0.2 2,720,399 + -0.7 2,720,399 + -1.5 2,720,399 + -0.3 2,720,399 + -0.6 2,720,400 - +1.3 2,720,400 - -0.5 2,720,400 - +0.2 2,720,400 - -0.8 2,720,400 - -0.3 2,720,400 - +0.4 2,720,400 - -0.3 2,720,565 + LRK53_RS12250 0.53 +0.9 2,720,565 + LRK53_RS12250 0.53 -0.2 2,720,565 + LRK53_RS12250 0.53 -0.2 2,720,565 + LRK53_RS12250 0.53 +0.5 2,720,565 + LRK53_RS12250 0.53 +0.5 2,720,565 + LRK53_RS12250 0.53 +0.4 2,720,565 + LRK53_RS12250 0.53 -0.1 2,720,565 + LRK53_RS12250 0.53 -1.5 2,720,565 + LRK53_RS12250 0.53 -0.9 2,720,565 + LRK53_RS12250 0.53 -0.5 2,720,565 + LRK53_RS12250 0.53 +1.5 2,720,565 + LRK53_RS12250 0.53 +0.4 2,720,565 + LRK53_RS12250 0.53 -1.9 2,720,565 + LRK53_RS12250 0.53 +2.3 2,720,565 + LRK53_RS12250 0.53 -1.6 2,720,565 + LRK53_RS12250 0.53 +2.4 2,720,565 + LRK53_RS12250 0.53 +1.7 2,720,565 + LRK53_RS12250 0.53 +0.3 2,720,565 + LRK53_RS12250 0.53 -0.7 2,720,566 - LRK53_RS12250 0.54 -0.6 2,720,566 - LRK53_RS12250 0.54 +3.9 2,720,566 - LRK53_RS12250 0.54 +0.8 2,720,566 - LRK53_RS12250 0.54 -0.3 2,720,566 - LRK53_RS12250 0.54 -1.1 2,720,566 - LRK53_RS12250 0.54 +0.1 2,720,566 - LRK53_RS12250 0.54 +1.5 2,720,566 - LRK53_RS12250 0.54 -0.7 2,720,566 - LRK53_RS12250 0.54 +0.8 2,720,566 - LRK53_RS12250 0.54 +0.1 2,720,566 - LRK53_RS12250 0.54 +0.0 2,720,566 - LRK53_RS12250 0.54 -0.9 2,720,566 - LRK53_RS12250 0.54 -2.1 2,720,566 - LRK53_RS12250 0.54 +0.5 2,720,566 - LRK53_RS12250 0.54 +1.1 2,720,568 + LRK53_RS12250 0.54 -0.5 2,720,568 + LRK53_RS12250 0.54 -0.9 2,720,568 + LRK53_RS12250 0.54 +0.9 2,720,568 + LRK53_RS12250 0.54 -1.0 2,720,568 + LRK53_RS12250 0.54 -0.7 2,720,568 + LRK53_RS12250 0.54 +0.9 2,720,568 + LRK53_RS12250 0.54 +0.4 2,720,568 + LRK53_RS12250 0.54 -1.1 2,720,569 - LRK53_RS12250 0.54 -0.6 2,720,569 - LRK53_RS12250 0.54 -0.4 2,720,569 - LRK53_RS12250 0.54 -0.8 2,720,569 - LRK53_RS12250 0.54 +0.3 2,720,569 - LRK53_RS12250 0.54 -0.3 2,720,678 + LRK53_RS12250 0.83 -0.7 2,720,678 + LRK53_RS12250 0.83 +2.1 2,720,678 + LRK53_RS12250 0.83 +0.8 2,720,678 + LRK53_RS12250 0.83 -1.2 2,720,678 + LRK53_RS12250 0.83 -0.1 2,720,678 + LRK53_RS12250 0.83 +0.9 2,720,678 + LRK53_RS12250 0.83 -1.1 2,720,678 + LRK53_RS12250 0.83 -0.3 2,720,678 + LRK53_RS12250 0.83 +0.6 2,720,678 + LRK53_RS12250 0.83 +1.2 2,720,678 + LRK53_RS12250 0.83 -0.7 2,720,678 + LRK53_RS12250 0.83 +0.3 2,720,678 + LRK53_RS12250 0.83 +0.6 2,720,678 + LRK53_RS12250 0.83 +0.3 2,720,678 + LRK53_RS12250 0.83 +0.5 2,720,678 + LRK53_RS12250 0.83 -2.1 2,720,678 + LRK53_RS12250 0.83 +0.8 2,720,678 + LRK53_RS12250 0.83 +0.8 2,720,678 + LRK53_RS12250 0.83 -1.3 2,720,678 + LRK53_RS12250 0.83 -0.9 2,720,678 + LRK53_RS12250 0.83 -1.0 2,720,679 - LRK53_RS12250 0.84 -0.8 2,720,679 - LRK53_RS12250 0.84 -1.4 2,720,679 - LRK53_RS12250 0.84 +0.3 2,720,679 - LRK53_RS12250 0.84 -1.6 2,720,679 - LRK53_RS12250 0.84 -0.1 2,720,679 - LRK53_RS12250 0.84 -0.3 2,720,679 - LRK53_RS12250 0.84 +0.4 2,720,679 - LRK53_RS12250 0.84 -0.7 2,720,679 - LRK53_RS12250 0.84 -2.1 2,720,679 - LRK53_RS12250 0.84 +0.4 2,720,679 - LRK53_RS12250 0.84 -0.9 2,720,679 - LRK53_RS12250 0.84 +0.9 2,720,679 - LRK53_RS12250 0.84 +0.9 2,720,679 - LRK53_RS12250 0.84 -0.7 2,720,679 - LRK53_RS12250 0.84 -0.9 2,720,679 - LRK53_RS12250 0.84 +0.9 2,720,679 - LRK53_RS12250 0.84 -0.7 2,720,679 - LRK53_RS12250 0.84 -2.0 2,720,679 - LRK53_RS12250 0.84 -1.3 2,720,679 - LRK53_RS12250 0.84 +0.2 2,720,679 - LRK53_RS12250 0.84 -0.5 2,720,679 - LRK53_RS12250 0.84 -1.1 2,720,679 - LRK53_RS12250 0.84 -1.5 2,720,679 - LRK53_RS12250 0.84 +0.2 2,720,679 - LRK53_RS12250 0.84 -2.2 2,720,679 - LRK53_RS12250 0.84 +1.8 2,720,679 - LRK53_RS12250 0.84 +0.7 2,720,679 - LRK53_RS12250 0.84 -0.2 2,720,679 - LRK53_RS12250 0.84 +0.8 2,720,679 - LRK53_RS12250 0.84 +2.9 2,720,679 - LRK53_RS12250 0.84 +0.8
Or see this region's nucleotide sequence