Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS12245

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS12235 and LRK53_RS12240 overlap by 8 nucleotidesLRK53_RS12240 and LRK53_RS12245 are separated by 82 nucleotidesLRK53_RS12245 and LRK53_RS12250 overlap by 1 nucleotidesLRK53_RS12250 and LRK53_RS12255 are separated by 15 nucleotides LRK53_RS12235: LRK53_RS12235 - ATP-dependent zinc metalloprotease FtsH, at 2,717,380 to 2,719,338 _RS12235 LRK53_RS12240: LRK53_RS12240 - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 2,719,331 to 2,719,984 _RS12240 LRK53_RS12245: LRK53_RS12245 - ribosome assembly RNA-binding protein YhbY, at 2,720,067 to 2,720,363 _RS12245 LRK53_RS12250: LRK53_RS12250 - Mth938-like domain-containing protein, at 2,720,363 to 2,720,740 _RS12250 LRK53_RS12255: LRK53_RS12255 - peptidoglycan DD-metalloendopeptidase family protein, at 2,720,756 to 2,721,754 _RS12255 Position (kb) 2720 2721Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2720.027 kb on - strandat 2720.027 kb on - strandat 2720.027 kb on - strandat 2720.330 kb on + strand, within LRK53_RS12245at 2720.330 kb on + strand, within LRK53_RS12245at 2720.331 kb on - strand, within LRK53_RS12245at 2720.331 kb on - strand, within LRK53_RS12245at 2720.331 kb on - strand, within LRK53_RS12245at 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.399 kb on + strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.400 kb on - strandat 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.565 kb on + strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.566 kb on - strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.568 kb on + strand, within LRK53_RS12250at 2720.569 kb on - strand, within LRK53_RS12250at 2720.569 kb on - strand, within LRK53_RS12250at 2720.569 kb on - strand, within LRK53_RS12250at 2720.569 kb on - strand, within LRK53_RS12250at 2720.569 kb on - strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.678 kb on + strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250at 2720.679 kb on - strand, within LRK53_RS12250

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,720,027 - +1.2
2,720,027 - -0.7
2,720,027 - +0.3
2,720,330 + LRK53_RS12245 0.89 +0.4
2,720,330 + LRK53_RS12245 0.89 -0.6
2,720,331 - LRK53_RS12245 0.89 -1.7
2,720,331 - LRK53_RS12245 0.89 +0.3
2,720,331 - LRK53_RS12245 0.89 +1.1
2,720,399 + -0.7
2,720,399 + +1.2
2,720,399 + -1.6
2,720,399 + -0.2
2,720,399 + -0.7
2,720,399 + -1.5
2,720,399 + -0.3
2,720,399 + -0.6
2,720,400 - +1.3
2,720,400 - -0.5
2,720,400 - +0.2
2,720,400 - -0.8
2,720,400 - -0.3
2,720,400 - +0.4
2,720,400 - -0.3
2,720,565 + LRK53_RS12250 0.53 +0.9
2,720,565 + LRK53_RS12250 0.53 -0.2
2,720,565 + LRK53_RS12250 0.53 -0.2
2,720,565 + LRK53_RS12250 0.53 +0.5
2,720,565 + LRK53_RS12250 0.53 +0.5
2,720,565 + LRK53_RS12250 0.53 +0.4
2,720,565 + LRK53_RS12250 0.53 -0.1
2,720,565 + LRK53_RS12250 0.53 -1.5
2,720,565 + LRK53_RS12250 0.53 -0.9
2,720,565 + LRK53_RS12250 0.53 -0.5
2,720,565 + LRK53_RS12250 0.53 +1.5
2,720,565 + LRK53_RS12250 0.53 +0.4
2,720,565 + LRK53_RS12250 0.53 -1.9
2,720,565 + LRK53_RS12250 0.53 +2.3
2,720,565 + LRK53_RS12250 0.53 -1.6
2,720,565 + LRK53_RS12250 0.53 +2.4
2,720,565 + LRK53_RS12250 0.53 +1.7
2,720,565 + LRK53_RS12250 0.53 +0.3
2,720,565 + LRK53_RS12250 0.53 -0.7
2,720,566 - LRK53_RS12250 0.54 -0.6
2,720,566 - LRK53_RS12250 0.54 +3.9
2,720,566 - LRK53_RS12250 0.54 +0.8
2,720,566 - LRK53_RS12250 0.54 -0.3
2,720,566 - LRK53_RS12250 0.54 -1.1
2,720,566 - LRK53_RS12250 0.54 +0.1
2,720,566 - LRK53_RS12250 0.54 +1.5
2,720,566 - LRK53_RS12250 0.54 -0.7
2,720,566 - LRK53_RS12250 0.54 +0.8
2,720,566 - LRK53_RS12250 0.54 +0.1
2,720,566 - LRK53_RS12250 0.54 +0.0
2,720,566 - LRK53_RS12250 0.54 -0.9
2,720,566 - LRK53_RS12250 0.54 -2.1
2,720,566 - LRK53_RS12250 0.54 +0.5
2,720,566 - LRK53_RS12250 0.54 +1.1
2,720,568 + LRK53_RS12250 0.54 -0.5
2,720,568 + LRK53_RS12250 0.54 -0.9
2,720,568 + LRK53_RS12250 0.54 +0.9
2,720,568 + LRK53_RS12250 0.54 -1.0
2,720,568 + LRK53_RS12250 0.54 -0.7
2,720,568 + LRK53_RS12250 0.54 +0.9
2,720,568 + LRK53_RS12250 0.54 +0.4
2,720,568 + LRK53_RS12250 0.54 -1.1
2,720,569 - LRK53_RS12250 0.54 -0.6
2,720,569 - LRK53_RS12250 0.54 -0.4
2,720,569 - LRK53_RS12250 0.54 -0.8
2,720,569 - LRK53_RS12250 0.54 +0.3
2,720,569 - LRK53_RS12250 0.54 -0.3
2,720,678 + LRK53_RS12250 0.83 -0.7
2,720,678 + LRK53_RS12250 0.83 +2.1
2,720,678 + LRK53_RS12250 0.83 +0.8
2,720,678 + LRK53_RS12250 0.83 -1.2
2,720,678 + LRK53_RS12250 0.83 -0.1
2,720,678 + LRK53_RS12250 0.83 +0.9
2,720,678 + LRK53_RS12250 0.83 -1.1
2,720,678 + LRK53_RS12250 0.83 -0.3
2,720,678 + LRK53_RS12250 0.83 +0.6
2,720,678 + LRK53_RS12250 0.83 +1.2
2,720,678 + LRK53_RS12250 0.83 -0.7
2,720,678 + LRK53_RS12250 0.83 +0.3
2,720,678 + LRK53_RS12250 0.83 +0.6
2,720,678 + LRK53_RS12250 0.83 +0.3
2,720,678 + LRK53_RS12250 0.83 +0.5
2,720,678 + LRK53_RS12250 0.83 -2.1
2,720,678 + LRK53_RS12250 0.83 +0.8
2,720,678 + LRK53_RS12250 0.83 +0.8
2,720,678 + LRK53_RS12250 0.83 -1.3
2,720,678 + LRK53_RS12250 0.83 -0.9
2,720,678 + LRK53_RS12250 0.83 -1.0
2,720,679 - LRK53_RS12250 0.84 -0.8
2,720,679 - LRK53_RS12250 0.84 -1.4
2,720,679 - LRK53_RS12250 0.84 +0.3
2,720,679 - LRK53_RS12250 0.84 -1.6
2,720,679 - LRK53_RS12250 0.84 -0.1
2,720,679 - LRK53_RS12250 0.84 -0.3
2,720,679 - LRK53_RS12250 0.84 +0.4
2,720,679 - LRK53_RS12250 0.84 -0.7
2,720,679 - LRK53_RS12250 0.84 -2.1
2,720,679 - LRK53_RS12250 0.84 +0.4
2,720,679 - LRK53_RS12250 0.84 -0.9
2,720,679 - LRK53_RS12250 0.84 +0.9
2,720,679 - LRK53_RS12250 0.84 +0.9
2,720,679 - LRK53_RS12250 0.84 -0.7
2,720,679 - LRK53_RS12250 0.84 -0.9
2,720,679 - LRK53_RS12250 0.84 +0.9
2,720,679 - LRK53_RS12250 0.84 -0.7
2,720,679 - LRK53_RS12250 0.84 -2.0
2,720,679 - LRK53_RS12250 0.84 -1.3
2,720,679 - LRK53_RS12250 0.84 +0.2
2,720,679 - LRK53_RS12250 0.84 -0.5
2,720,679 - LRK53_RS12250 0.84 -1.1
2,720,679 - LRK53_RS12250 0.84 -1.5
2,720,679 - LRK53_RS12250 0.84 +0.2
2,720,679 - LRK53_RS12250 0.84 -2.2
2,720,679 - LRK53_RS12250 0.84 +1.8
2,720,679 - LRK53_RS12250 0.84 +0.7
2,720,679 - LRK53_RS12250 0.84 -0.2
2,720,679 - LRK53_RS12250 0.84 +0.8
2,720,679 - LRK53_RS12250 0.84 +2.9
2,720,679 - LRK53_RS12250 0.84 +0.8

Or see this region's nucleotide sequence