Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11215

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11210 and LRK53_RS11215 are separated by 183 nucleotidesLRK53_RS11215 and LRK53_RS11220 are separated by 105 nucleotidesLRK53_RS11220 and LRK53_RS11225 are separated by 303 nucleotides LRK53_RS11210: LRK53_RS11210 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 2,500,693 to 2,503,080 _RS11210 LRK53_RS11215: LRK53_RS11215 - acetyl-CoA C-acyltransferase, at 2,503,264 to 2,504,469 _RS11215 LRK53_RS11220: LRK53_RS11220 - hypothetical protein, at 2,504,575 to 2,504,970 _RS11220 LRK53_RS11225: LRK53_RS11225 - hypothetical protein, at 2,505,274 to 2,506,281 _RS11225 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2502.278 kb on + strand, within LRK53_RS11210at 2502.278 kb on + strand, within LRK53_RS11210at 2502.278 kb on + strand, within LRK53_RS11210at 2502.279 kb on - strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.514 kb on + strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.515 kb on - strand, within LRK53_RS11210at 2502.730 kb on + strand, within LRK53_RS11210at 2502.730 kb on + strand, within LRK53_RS11210at 2502.731 kb on - strand, within LRK53_RS11210at 2502.731 kb on - strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.742 kb on + strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.743 kb on - strand, within LRK53_RS11210at 2502.746 kb on + strand, within LRK53_RS11210at 2502.746 kb on + strand, within LRK53_RS11210at 2502.746 kb on + strand, within LRK53_RS11210at 2502.747 kb on - strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.799 kb on + strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.800 kb on - strand, within LRK53_RS11210at 2502.877 kb on + strandat 2502.877 kb on + strandat 2502.878 kb on - strandat 2502.878 kb on - strandat 2502.878 kb on - strandat 2503.057 kb on - strandat 2503.286 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.288 kb on + strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.289 kb on - strandat 2503.982 kb on + strand, within LRK53_RS11215at 2503.982 kb on + strand, within LRK53_RS11215at 2503.982 kb on + strand, within LRK53_RS11215at 2503.982 kb on + strand, within LRK53_RS11215at 2503.983 kb on - strand, within LRK53_RS11215at 2503.983 kb on - strand, within LRK53_RS11215at 2503.983 kb on - strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.089 kb on + strand, within LRK53_RS11215at 2504.090 kb on - strand, within LRK53_RS11215at 2504.090 kb on - strand, within LRK53_RS11215at 2504.090 kb on - strand, within LRK53_RS11215at 2504.404 kb on + strandat 2504.404 kb on + strandat 2504.404 kb on + strandat 2504.405 kb on - strandat 2504.548 kb on - strandat 2504.576 kb on + strandat 2504.674 kb on + strand, within LRK53_RS11220at 2504.674 kb on + strand, within LRK53_RS11220at 2504.675 kb on - strand, within LRK53_RS11220at 2504.675 kb on - strand, within LRK53_RS11220at 2504.702 kb on - strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.708 kb on + strand, within LRK53_RS11220at 2504.709 kb on - strand, within LRK53_RS11220at 2504.709 kb on - strand, within LRK53_RS11220at 2504.709 kb on - strand, within LRK53_RS11220at 2504.709 kb on - strand, within LRK53_RS11220at 2504.709 kb on - strand, within LRK53_RS11220at 2504.735 kb on + strand, within LRK53_RS11220at 2504.735 kb on + strand, within LRK53_RS11220at 2504.735 kb on + strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.736 kb on - strand, within LRK53_RS11220at 2504.738 kb on + strand, within LRK53_RS11220at 2504.738 kb on + strand, within LRK53_RS11220at 2504.738 kb on + strand, within LRK53_RS11220at 2504.791 kb on + strand, within LRK53_RS11220at 2504.792 kb on - strand, within LRK53_RS11220at 2504.792 kb on - strand, within LRK53_RS11220at 2504.792 kb on - strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.832 kb on + strand, within LRK53_RS11220at 2504.833 kb on - strand, within LRK53_RS11220at 2504.833 kb on - strand, within LRK53_RS11220at 2504.833 kb on - strand, within LRK53_RS11220at 2505.092 kb on - strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.158 kb on + strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.159 kb on - strandat 2505.195 kb on - strandat 2505.336 kb on - strandat 2505.336 kb on - strandat 2505.336 kb on - strandat 2505.366 kb on - strandat 2505.366 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,502,278 + LRK53_RS11210 0.66 -0.3
2,502,278 + LRK53_RS11210 0.66 -0.4
2,502,278 + LRK53_RS11210 0.66 -1.4
2,502,279 - LRK53_RS11210 0.66 +1.8
2,502,514 + LRK53_RS11210 0.76 -1.1
2,502,514 + LRK53_RS11210 0.76 -0.8
2,502,514 + LRK53_RS11210 0.76 +0.4
2,502,514 + LRK53_RS11210 0.76 +1.2
2,502,514 + LRK53_RS11210 0.76 -0.5
2,502,514 + LRK53_RS11210 0.76 -0.1
2,502,514 + LRK53_RS11210 0.76 -0.1
2,502,514 + LRK53_RS11210 0.76 +0.4
2,502,514 + LRK53_RS11210 0.76 -0.2
2,502,514 + LRK53_RS11210 0.76 +1.4
2,502,514 + LRK53_RS11210 0.76 -1.5
2,502,515 - LRK53_RS11210 0.76 +0.8
2,502,515 - LRK53_RS11210 0.76 -0.2
2,502,515 - LRK53_RS11210 0.76 -1.7
2,502,515 - LRK53_RS11210 0.76 +0.7
2,502,515 - LRK53_RS11210 0.76 -0.0
2,502,515 - LRK53_RS11210 0.76 -1.2
2,502,515 - LRK53_RS11210 0.76 -1.2
2,502,515 - LRK53_RS11210 0.76 -0.4
2,502,515 - LRK53_RS11210 0.76 -0.3
2,502,515 - LRK53_RS11210 0.76 +0.4
2,502,515 - LRK53_RS11210 0.76 -0.4
2,502,730 + LRK53_RS11210 0.85 +1.2
2,502,730 + LRK53_RS11210 0.85 -0.1
2,502,731 - LRK53_RS11210 0.85 -1.1
2,502,731 - LRK53_RS11210 0.85 -0.2
2,502,742 + LRK53_RS11210 0.86 -1.4
2,502,742 + LRK53_RS11210 0.86 +2.2
2,502,742 + LRK53_RS11210 0.86 +0.5
2,502,742 + LRK53_RS11210 0.86 -1.3
2,502,742 + LRK53_RS11210 0.86 +1.1
2,502,742 + LRK53_RS11210 0.86 -1.1
2,502,742 + LRK53_RS11210 0.86 -1.1
2,502,742 + LRK53_RS11210 0.86 -0.3
2,502,742 + LRK53_RS11210 0.86 +0.5
2,502,742 + LRK53_RS11210 0.86 -0.1
2,502,743 - LRK53_RS11210 0.86 -1.8
2,502,743 - LRK53_RS11210 0.86 +0.4
2,502,743 - LRK53_RS11210 0.86 +1.0
2,502,743 - LRK53_RS11210 0.86 -2.2
2,502,743 - LRK53_RS11210 0.86 -1.5
2,502,743 - LRK53_RS11210 0.86 -1.9
2,502,743 - LRK53_RS11210 0.86 -0.4
2,502,743 - LRK53_RS11210 0.86 +0.2
2,502,743 - LRK53_RS11210 0.86 +0.6
2,502,743 - LRK53_RS11210 0.86 +0.9
2,502,743 - LRK53_RS11210 0.86 -1.8
2,502,743 - LRK53_RS11210 0.86 -1.3
2,502,743 - LRK53_RS11210 0.86 -0.6
2,502,746 + LRK53_RS11210 0.86 +0.4
2,502,746 + LRK53_RS11210 0.86 -2.0
2,502,746 + LRK53_RS11210 0.86 -0.9
2,502,747 - LRK53_RS11210 0.86 -0.1
2,502,799 + LRK53_RS11210 0.88 +2.4
2,502,799 + LRK53_RS11210 0.88 -0.6
2,502,799 + LRK53_RS11210 0.88 -0.4
2,502,799 + LRK53_RS11210 0.88 -0.7
2,502,799 + LRK53_RS11210 0.88 +2.5
2,502,799 + LRK53_RS11210 0.88 -0.8
2,502,800 - LRK53_RS11210 0.88 -0.3
2,502,800 - LRK53_RS11210 0.88 -0.9
2,502,800 - LRK53_RS11210 0.88 -0.1
2,502,800 - LRK53_RS11210 0.88 -0.4
2,502,800 - LRK53_RS11210 0.88 -0.1
2,502,800 - LRK53_RS11210 0.88 +2.2
2,502,877 + +2.5
2,502,877 + -0.5
2,502,878 - -1.5
2,502,878 - -0.1
2,502,878 - -1.7
2,503,057 - -1.3
2,503,286 + -1.1
2,503,288 + -0.9
2,503,288 + -0.9
2,503,288 + -0.7
2,503,288 + +0.3
2,503,288 + -1.0
2,503,288 + -0.0
2,503,288 + -1.2
2,503,288 + -0.9
2,503,288 + -0.4
2,503,288 + -0.9
2,503,288 + -1.6
2,503,288 + +1.8
2,503,288 + -0.1
2,503,288 + +0.5
2,503,288 + -2.7
2,503,288 + -0.2
2,503,289 - -1.3
2,503,289 - -0.9
2,503,289 - -0.8
2,503,289 - -1.0
2,503,289 - -0.2
2,503,289 - -0.9
2,503,289 - +1.1
2,503,289 - -1.0
2,503,289 - -2.4
2,503,289 - -1.7
2,503,982 + LRK53_RS11215 0.60 -0.3
2,503,982 + LRK53_RS11215 0.60 +0.8
2,503,982 + LRK53_RS11215 0.60 -1.1
2,503,982 + LRK53_RS11215 0.60 -0.0
2,503,983 - LRK53_RS11215 0.60 -0.2
2,503,983 - LRK53_RS11215 0.60 -0.2
2,503,983 - LRK53_RS11215 0.60 +1.5
2,504,089 + LRK53_RS11215 0.68 +0.1
2,504,089 + LRK53_RS11215 0.68 -0.2
2,504,089 + LRK53_RS11215 0.68 -0.8
2,504,089 + LRK53_RS11215 0.68 +0.0
2,504,089 + LRK53_RS11215 0.68 +1.1
2,504,089 + LRK53_RS11215 0.68 -0.7
2,504,089 + LRK53_RS11215 0.68 +0.8
2,504,089 + LRK53_RS11215 0.68 +0.4
2,504,089 + LRK53_RS11215 0.68 +1.8
2,504,089 + LRK53_RS11215 0.68 -0.3
2,504,089 + LRK53_RS11215 0.68 -0.2
2,504,090 - LRK53_RS11215 0.68 -2.8
2,504,090 - LRK53_RS11215 0.68 +1.9
2,504,090 - LRK53_RS11215 0.68 +0.8
2,504,404 + -2.1
2,504,404 + -0.1
2,504,404 + +0.3
2,504,405 - -1.4
2,504,548 - -0.5
2,504,576 + +0.2
2,504,674 + LRK53_RS11220 0.25 -2.2
2,504,674 + LRK53_RS11220 0.25 -0.5
2,504,675 - LRK53_RS11220 0.25 -0.2
2,504,675 - LRK53_RS11220 0.25 -2.7
2,504,702 - LRK53_RS11220 0.32 -0.7
2,504,708 + LRK53_RS11220 0.34 +0.8
2,504,708 + LRK53_RS11220 0.34 -0.9
2,504,708 + LRK53_RS11220 0.34 -0.4
2,504,708 + LRK53_RS11220 0.34 +1.1
2,504,708 + LRK53_RS11220 0.34 -3.1
2,504,708 + LRK53_RS11220 0.34 +1.0
2,504,709 - LRK53_RS11220 0.34 -0.3
2,504,709 - LRK53_RS11220 0.34 -0.3
2,504,709 - LRK53_RS11220 0.34 -0.9
2,504,709 - LRK53_RS11220 0.34 -0.7
2,504,709 - LRK53_RS11220 0.34 -1.7
2,504,735 + LRK53_RS11220 0.40 +0.7
2,504,735 + LRK53_RS11220 0.40 -1.5
2,504,735 + LRK53_RS11220 0.40 -3.2
2,504,736 - LRK53_RS11220 0.41 -0.8
2,504,736 - LRK53_RS11220 0.41 +0.9
2,504,736 - LRK53_RS11220 0.41 -0.4
2,504,736 - LRK53_RS11220 0.41 +1.0
2,504,736 - LRK53_RS11220 0.41 +0.1
2,504,736 - LRK53_RS11220 0.41 -1.4
2,504,736 - LRK53_RS11220 0.41 -0.0
2,504,736 - LRK53_RS11220 0.41 -2.0
2,504,736 - LRK53_RS11220 0.41 +1.2
2,504,736 - LRK53_RS11220 0.41 +3.4
2,504,736 - LRK53_RS11220 0.41 +0.7
2,504,736 - LRK53_RS11220 0.41 +0.4
2,504,738 + LRK53_RS11220 0.41 +0.6
2,504,738 + LRK53_RS11220 0.41 -0.1
2,504,738 + LRK53_RS11220 0.41 -0.6
2,504,791 + LRK53_RS11220 0.55 -0.2
2,504,792 - LRK53_RS11220 0.55 +0.9
2,504,792 - LRK53_RS11220 0.55 +1.0
2,504,792 - LRK53_RS11220 0.55 -0.4
2,504,832 + LRK53_RS11220 0.65 +1.9
2,504,832 + LRK53_RS11220 0.65 -0.3
2,504,832 + LRK53_RS11220 0.65 -0.3
2,504,832 + LRK53_RS11220 0.65 +0.2
2,504,832 + LRK53_RS11220 0.65 -0.1
2,504,832 + LRK53_RS11220 0.65 -0.6
2,504,833 - LRK53_RS11220 0.65 -0.2
2,504,833 - LRK53_RS11220 0.65 -0.1
2,504,833 - LRK53_RS11220 0.65 -1.3
2,505,092 - -0.8
2,505,158 + -1.5
2,505,158 + +1.2
2,505,158 + -1.3
2,505,158 + -1.8
2,505,158 + -2.7
2,505,158 + -0.1
2,505,158 + +0.7
2,505,158 + -1.0
2,505,159 - -0.4
2,505,159 - -1.2
2,505,159 - +0.5
2,505,159 - +1.0
2,505,159 - -1.9
2,505,159 - +0.2
2,505,159 - -0.5
2,505,159 - -0.9
2,505,195 - -0.9
2,505,336 - -0.1
2,505,336 - -0.2
2,505,336 - -0.4
2,505,366 - -1.2
2,505,366 - +0.4

Or see this region's nucleotide sequence