Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11210 and LRK53_RS11215 are separated by 183 nucleotides LRK53_RS11215 and LRK53_RS11220 are separated by 105 nucleotides LRK53_RS11220 and LRK53_RS11225 are separated by 303 nucleotides
LRK53_RS11210: LRK53_RS11210 - 3-hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase family protein, at 2,500,693 to 2,503,080
_RS11210
LRK53_RS11215: LRK53_RS11215 - acetyl-CoA C-acyltransferase, at 2,503,264 to 2,504,469
_RS11215
LRK53_RS11220: LRK53_RS11220 - hypothetical protein, at 2,504,575 to 2,504,970
_RS11220
LRK53_RS11225: LRK53_RS11225 - hypothetical protein, at 2,505,274 to 2,506,281
_RS11225
Position (kb)
2503
2504
2505 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2502.278 kb on + strand, within LRK53_RS11210 at 2502.278 kb on + strand, within LRK53_RS11210 at 2502.278 kb on + strand, within LRK53_RS11210 at 2502.279 kb on - strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.514 kb on + strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.515 kb on - strand, within LRK53_RS11210 at 2502.730 kb on + strand, within LRK53_RS11210 at 2502.730 kb on + strand, within LRK53_RS11210 at 2502.731 kb on - strand, within LRK53_RS11210 at 2502.731 kb on - strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.742 kb on + strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.743 kb on - strand, within LRK53_RS11210 at 2502.746 kb on + strand, within LRK53_RS11210 at 2502.746 kb on + strand, within LRK53_RS11210 at 2502.746 kb on + strand, within LRK53_RS11210 at 2502.747 kb on - strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.799 kb on + strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.800 kb on - strand, within LRK53_RS11210 at 2502.877 kb on + strand at 2502.877 kb on + strand at 2502.878 kb on - strand at 2502.878 kb on - strand at 2502.878 kb on - strand at 2503.057 kb on - strand at 2503.286 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.288 kb on + strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.289 kb on - strand at 2503.982 kb on + strand, within LRK53_RS11215 at 2503.982 kb on + strand, within LRK53_RS11215 at 2503.982 kb on + strand, within LRK53_RS11215 at 2503.982 kb on + strand, within LRK53_RS11215 at 2503.983 kb on - strand, within LRK53_RS11215 at 2503.983 kb on - strand, within LRK53_RS11215 at 2503.983 kb on - strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.089 kb on + strand, within LRK53_RS11215 at 2504.090 kb on - strand, within LRK53_RS11215 at 2504.090 kb on - strand, within LRK53_RS11215 at 2504.090 kb on - strand, within LRK53_RS11215 at 2504.404 kb on + strand at 2504.404 kb on + strand at 2504.404 kb on + strand at 2504.405 kb on - strand at 2504.548 kb on - strand at 2504.576 kb on + strand at 2504.674 kb on + strand, within LRK53_RS11220 at 2504.674 kb on + strand, within LRK53_RS11220 at 2504.675 kb on - strand, within LRK53_RS11220 at 2504.675 kb on - strand, within LRK53_RS11220 at 2504.702 kb on - strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.708 kb on + strand, within LRK53_RS11220 at 2504.709 kb on - strand, within LRK53_RS11220 at 2504.709 kb on - strand, within LRK53_RS11220 at 2504.709 kb on - strand, within LRK53_RS11220 at 2504.709 kb on - strand, within LRK53_RS11220 at 2504.709 kb on - strand, within LRK53_RS11220 at 2504.735 kb on + strand, within LRK53_RS11220 at 2504.735 kb on + strand, within LRK53_RS11220 at 2504.735 kb on + strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.736 kb on - strand, within LRK53_RS11220 at 2504.738 kb on + strand, within LRK53_RS11220 at 2504.738 kb on + strand, within LRK53_RS11220 at 2504.738 kb on + strand, within LRK53_RS11220 at 2504.791 kb on + strand, within LRK53_RS11220 at 2504.792 kb on - strand, within LRK53_RS11220 at 2504.792 kb on - strand, within LRK53_RS11220 at 2504.792 kb on - strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.832 kb on + strand, within LRK53_RS11220 at 2504.833 kb on - strand, within LRK53_RS11220 at 2504.833 kb on - strand, within LRK53_RS11220 at 2504.833 kb on - strand, within LRK53_RS11220 at 2505.092 kb on - strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.158 kb on + strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.159 kb on - strand at 2505.195 kb on - strand at 2505.336 kb on - strand at 2505.336 kb on - strand at 2505.336 kb on - strand at 2505.366 kb on - strand at 2505.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,502,278 + LRK53_RS11210 0.66 -0.3 2,502,278 + LRK53_RS11210 0.66 -0.4 2,502,278 + LRK53_RS11210 0.66 -1.4 2,502,279 - LRK53_RS11210 0.66 +1.8 2,502,514 + LRK53_RS11210 0.76 -1.1 2,502,514 + LRK53_RS11210 0.76 -0.8 2,502,514 + LRK53_RS11210 0.76 +0.4 2,502,514 + LRK53_RS11210 0.76 +1.2 2,502,514 + LRK53_RS11210 0.76 -0.5 2,502,514 + LRK53_RS11210 0.76 -0.1 2,502,514 + LRK53_RS11210 0.76 -0.1 2,502,514 + LRK53_RS11210 0.76 +0.4 2,502,514 + LRK53_RS11210 0.76 -0.2 2,502,514 + LRK53_RS11210 0.76 +1.4 2,502,514 + LRK53_RS11210 0.76 -1.5 2,502,515 - LRK53_RS11210 0.76 +0.8 2,502,515 - LRK53_RS11210 0.76 -0.2 2,502,515 - LRK53_RS11210 0.76 -1.7 2,502,515 - LRK53_RS11210 0.76 +0.7 2,502,515 - LRK53_RS11210 0.76 -0.0 2,502,515 - LRK53_RS11210 0.76 -1.2 2,502,515 - LRK53_RS11210 0.76 -1.2 2,502,515 - LRK53_RS11210 0.76 -0.4 2,502,515 - LRK53_RS11210 0.76 -0.3 2,502,515 - LRK53_RS11210 0.76 +0.4 2,502,515 - LRK53_RS11210 0.76 -0.4 2,502,730 + LRK53_RS11210 0.85 +1.2 2,502,730 + LRK53_RS11210 0.85 -0.1 2,502,731 - LRK53_RS11210 0.85 -1.1 2,502,731 - LRK53_RS11210 0.85 -0.2 2,502,742 + LRK53_RS11210 0.86 -1.4 2,502,742 + LRK53_RS11210 0.86 +2.2 2,502,742 + LRK53_RS11210 0.86 +0.5 2,502,742 + LRK53_RS11210 0.86 -1.3 2,502,742 + LRK53_RS11210 0.86 +1.1 2,502,742 + LRK53_RS11210 0.86 -1.1 2,502,742 + LRK53_RS11210 0.86 -1.1 2,502,742 + LRK53_RS11210 0.86 -0.3 2,502,742 + LRK53_RS11210 0.86 +0.5 2,502,742 + LRK53_RS11210 0.86 -0.1 2,502,743 - LRK53_RS11210 0.86 -1.8 2,502,743 - LRK53_RS11210 0.86 +0.4 2,502,743 - LRK53_RS11210 0.86 +1.0 2,502,743 - LRK53_RS11210 0.86 -2.2 2,502,743 - LRK53_RS11210 0.86 -1.5 2,502,743 - LRK53_RS11210 0.86 -1.9 2,502,743 - LRK53_RS11210 0.86 -0.4 2,502,743 - LRK53_RS11210 0.86 +0.2 2,502,743 - LRK53_RS11210 0.86 +0.6 2,502,743 - LRK53_RS11210 0.86 +0.9 2,502,743 - LRK53_RS11210 0.86 -1.8 2,502,743 - LRK53_RS11210 0.86 -1.3 2,502,743 - LRK53_RS11210 0.86 -0.6 2,502,746 + LRK53_RS11210 0.86 +0.4 2,502,746 + LRK53_RS11210 0.86 -2.0 2,502,746 + LRK53_RS11210 0.86 -0.9 2,502,747 - LRK53_RS11210 0.86 -0.1 2,502,799 + LRK53_RS11210 0.88 +2.4 2,502,799 + LRK53_RS11210 0.88 -0.6 2,502,799 + LRK53_RS11210 0.88 -0.4 2,502,799 + LRK53_RS11210 0.88 -0.7 2,502,799 + LRK53_RS11210 0.88 +2.5 2,502,799 + LRK53_RS11210 0.88 -0.8 2,502,800 - LRK53_RS11210 0.88 -0.3 2,502,800 - LRK53_RS11210 0.88 -0.9 2,502,800 - LRK53_RS11210 0.88 -0.1 2,502,800 - LRK53_RS11210 0.88 -0.4 2,502,800 - LRK53_RS11210 0.88 -0.1 2,502,800 - LRK53_RS11210 0.88 +2.2 2,502,877 + +2.5 2,502,877 + -0.5 2,502,878 - -1.5 2,502,878 - -0.1 2,502,878 - -1.7 2,503,057 - -1.3 2,503,286 + -1.1 2,503,288 + -0.9 2,503,288 + -0.9 2,503,288 + -0.7 2,503,288 + +0.3 2,503,288 + -1.0 2,503,288 + -0.0 2,503,288 + -1.2 2,503,288 + -0.9 2,503,288 + -0.4 2,503,288 + -0.9 2,503,288 + -1.6 2,503,288 + +1.8 2,503,288 + -0.1 2,503,288 + +0.5 2,503,288 + -2.7 2,503,288 + -0.2 2,503,289 - -1.3 2,503,289 - -0.9 2,503,289 - -0.8 2,503,289 - -1.0 2,503,289 - -0.2 2,503,289 - -0.9 2,503,289 - +1.1 2,503,289 - -1.0 2,503,289 - -2.4 2,503,289 - -1.7 2,503,982 + LRK53_RS11215 0.60 -0.3 2,503,982 + LRK53_RS11215 0.60 +0.8 2,503,982 + LRK53_RS11215 0.60 -1.1 2,503,982 + LRK53_RS11215 0.60 -0.0 2,503,983 - LRK53_RS11215 0.60 -0.2 2,503,983 - LRK53_RS11215 0.60 -0.2 2,503,983 - LRK53_RS11215 0.60 +1.5 2,504,089 + LRK53_RS11215 0.68 +0.1 2,504,089 + LRK53_RS11215 0.68 -0.2 2,504,089 + LRK53_RS11215 0.68 -0.8 2,504,089 + LRK53_RS11215 0.68 +0.0 2,504,089 + LRK53_RS11215 0.68 +1.1 2,504,089 + LRK53_RS11215 0.68 -0.7 2,504,089 + LRK53_RS11215 0.68 +0.8 2,504,089 + LRK53_RS11215 0.68 +0.4 2,504,089 + LRK53_RS11215 0.68 +1.8 2,504,089 + LRK53_RS11215 0.68 -0.3 2,504,089 + LRK53_RS11215 0.68 -0.2 2,504,090 - LRK53_RS11215 0.68 -2.8 2,504,090 - LRK53_RS11215 0.68 +1.9 2,504,090 - LRK53_RS11215 0.68 +0.8 2,504,404 + -2.1 2,504,404 + -0.1 2,504,404 + +0.3 2,504,405 - -1.4 2,504,548 - -0.5 2,504,576 + +0.2 2,504,674 + LRK53_RS11220 0.25 -2.2 2,504,674 + LRK53_RS11220 0.25 -0.5 2,504,675 - LRK53_RS11220 0.25 -0.2 2,504,675 - LRK53_RS11220 0.25 -2.7 2,504,702 - LRK53_RS11220 0.32 -0.7 2,504,708 + LRK53_RS11220 0.34 +0.8 2,504,708 + LRK53_RS11220 0.34 -0.9 2,504,708 + LRK53_RS11220 0.34 -0.4 2,504,708 + LRK53_RS11220 0.34 +1.1 2,504,708 + LRK53_RS11220 0.34 -3.1 2,504,708 + LRK53_RS11220 0.34 +1.0 2,504,709 - LRK53_RS11220 0.34 -0.3 2,504,709 - LRK53_RS11220 0.34 -0.3 2,504,709 - LRK53_RS11220 0.34 -0.9 2,504,709 - LRK53_RS11220 0.34 -0.7 2,504,709 - LRK53_RS11220 0.34 -1.7 2,504,735 + LRK53_RS11220 0.40 +0.7 2,504,735 + LRK53_RS11220 0.40 -1.5 2,504,735 + LRK53_RS11220 0.40 -3.2 2,504,736 - LRK53_RS11220 0.41 -0.8 2,504,736 - LRK53_RS11220 0.41 +0.9 2,504,736 - LRK53_RS11220 0.41 -0.4 2,504,736 - LRK53_RS11220 0.41 +1.0 2,504,736 - LRK53_RS11220 0.41 +0.1 2,504,736 - LRK53_RS11220 0.41 -1.4 2,504,736 - LRK53_RS11220 0.41 -0.0 2,504,736 - LRK53_RS11220 0.41 -2.0 2,504,736 - LRK53_RS11220 0.41 +1.2 2,504,736 - LRK53_RS11220 0.41 +3.4 2,504,736 - LRK53_RS11220 0.41 +0.7 2,504,736 - LRK53_RS11220 0.41 +0.4 2,504,738 + LRK53_RS11220 0.41 +0.6 2,504,738 + LRK53_RS11220 0.41 -0.1 2,504,738 + LRK53_RS11220 0.41 -0.6 2,504,791 + LRK53_RS11220 0.55 -0.2 2,504,792 - LRK53_RS11220 0.55 +0.9 2,504,792 - LRK53_RS11220 0.55 +1.0 2,504,792 - LRK53_RS11220 0.55 -0.4 2,504,832 + LRK53_RS11220 0.65 +1.9 2,504,832 + LRK53_RS11220 0.65 -0.3 2,504,832 + LRK53_RS11220 0.65 -0.3 2,504,832 + LRK53_RS11220 0.65 +0.2 2,504,832 + LRK53_RS11220 0.65 -0.1 2,504,832 + LRK53_RS11220 0.65 -0.6 2,504,833 - LRK53_RS11220 0.65 -0.2 2,504,833 - LRK53_RS11220 0.65 -0.1 2,504,833 - LRK53_RS11220 0.65 -1.3 2,505,092 - -0.8 2,505,158 + -1.5 2,505,158 + +1.2 2,505,158 + -1.3 2,505,158 + -1.8 2,505,158 + -2.7 2,505,158 + -0.1 2,505,158 + +0.7 2,505,158 + -1.0 2,505,159 - -0.4 2,505,159 - -1.2 2,505,159 - +0.5 2,505,159 - +1.0 2,505,159 - -1.9 2,505,159 - +0.2 2,505,159 - -0.5 2,505,159 - -0.9 2,505,195 - -0.9 2,505,336 - -0.1 2,505,336 - -0.2 2,505,336 - -0.4 2,505,366 - -1.2 2,505,366 - +0.4
Or see this region's nucleotide sequence