Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11005

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS11000 and LRK53_RS11005 are separated by 103 nucleotidesLRK53_RS11005 and LRK53_RS11010 are separated by 211 nucleotides LRK53_RS11000: LRK53_RS11000 - LTA synthase family protein, at 2,456,806 to 2,458,755 _RS11000 LRK53_RS11005: LRK53_RS11005 - Tn3 family resolvase, at 2,458,859 to 2,458,996 _RS11005 LRK53_RS11010: LRK53_RS11010 - Tn3 family transposase, at 2,459,208 to 2,462,309 _RS11010 Position (kb) 2458 2459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2457.907 kb on + strand, within LRK53_RS11000at 2457.907 kb on + strand, within LRK53_RS11000at 2457.907 kb on + strand, within LRK53_RS11000at 2457.908 kb on - strand, within LRK53_RS11000at 2457.940 kb on + strand, within LRK53_RS11000at 2457.941 kb on - strand, within LRK53_RS11000at 2457.958 kb on + strand, within LRK53_RS11000at 2457.959 kb on - strand, within LRK53_RS11000at 2457.979 kb on + strand, within LRK53_RS11000at 2458.153 kb on + strand, within LRK53_RS11000at 2458.153 kb on + strand, within LRK53_RS11000at 2458.154 kb on - strand, within LRK53_RS11000at 2458.213 kb on + strand, within LRK53_RS11000at 2458.214 kb on - strand, within LRK53_RS11000at 2458.214 kb on - strand, within LRK53_RS11000at 2458.214 kb on - strand, within LRK53_RS11000at 2458.214 kb on - strand, within LRK53_RS11000at 2458.264 kb on + strand, within LRK53_RS11000at 2458.264 kb on + strand, within LRK53_RS11000at 2458.280 kb on + strand, within LRK53_RS11000at 2458.281 kb on - strand, within LRK53_RS11000at 2458.281 kb on - strand, within LRK53_RS11000at 2458.531 kb on + strand, within LRK53_RS11000at 2458.571 kb on + strandat 2458.572 kb on - strandat 2458.662 kb on - strandat 2458.662 kb on - strandat 2458.662 kb on - strandat 2458.682 kb on - strandat 2458.682 kb on - strandat 2458.753 kb on + strandat 2458.753 kb on + strandat 2458.882 kb on + strand, within LRK53_RS11005at 2458.883 kb on - strand, within LRK53_RS11005at 2458.883 kb on - strand, within LRK53_RS11005at 2458.883 kb on - strand, within LRK53_RS11005at 2458.895 kb on + strand, within LRK53_RS11005at 2458.896 kb on - strand, within LRK53_RS11005at 2458.896 kb on - strand, within LRK53_RS11005at 2458.896 kb on - strand, within LRK53_RS11005at 2458.997 kb on + strandat 2459.053 kb on + strandat 2459.053 kb on + strandat 2459.053 kb on + strandat 2459.053 kb on + strandat 2459.135 kb on + strandat 2459.135 kb on + strandat 2459.135 kb on + strandat 2459.135 kb on + strandat 2459.136 kb on - strandat 2459.136 kb on - strandat 2459.271 kb on + strandat 2459.272 kb on - strandat 2459.272 kb on - strandat 2459.310 kb on + strandat 2459.310 kb on + strandat 2459.310 kb on + strandat 2459.310 kb on + strandat 2459.311 kb on - strandat 2459.373 kb on + strandat 2459.373 kb on + strandat 2459.374 kb on - strandat 2459.395 kb on - strandat 2459.395 kb on - strandat 2459.473 kb on - strandat 2459.643 kb on + strand, within LRK53_RS11010at 2459.643 kb on + strand, within LRK53_RS11010at 2459.644 kb on - strand, within LRK53_RS11010at 2459.668 kb on - strand, within LRK53_RS11010at 2459.836 kb on - strand, within LRK53_RS11010at 2459.836 kb on - strand, within LRK53_RS11010at 2459.878 kb on - strand, within LRK53_RS11010at 2459.878 kb on - strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.985 kb on + strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.986 kb on - strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.988 kb on + strand, within LRK53_RS11010at 2459.989 kb on - strand, within LRK53_RS11010at 2459.989 kb on - strand, within LRK53_RS11010at 2459.989 kb on - strand, within LRK53_RS11010at 2459.989 kb on - strand, within LRK53_RS11010at 2459.989 kb on - strand, within LRK53_RS11010

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,457,907 + LRK53_RS11000 0.56 +1.0
2,457,907 + LRK53_RS11000 0.56 -2.0
2,457,907 + LRK53_RS11000 0.56 +0.3
2,457,908 - LRK53_RS11000 0.57 +0.6
2,457,940 + LRK53_RS11000 0.58 -0.2
2,457,941 - LRK53_RS11000 0.58 -0.9
2,457,958 + LRK53_RS11000 0.59 -1.0
2,457,959 - LRK53_RS11000 0.59 +2.4
2,457,979 + LRK53_RS11000 0.60 +0.2
2,458,153 + LRK53_RS11000 0.69 -0.3
2,458,153 + LRK53_RS11000 0.69 +0.2
2,458,154 - LRK53_RS11000 0.69 +0.2
2,458,213 + LRK53_RS11000 0.72 +0.9
2,458,214 - LRK53_RS11000 0.72 -0.5
2,458,214 - LRK53_RS11000 0.72 +1.2
2,458,214 - LRK53_RS11000 0.72 +0.2
2,458,214 - LRK53_RS11000 0.72 +0.5
2,458,264 + LRK53_RS11000 0.75 +0.3
2,458,264 + LRK53_RS11000 0.75 -1.2
2,458,280 + LRK53_RS11000 0.76 -0.5
2,458,281 - LRK53_RS11000 0.76 +0.1
2,458,281 - LRK53_RS11000 0.76 -1.1
2,458,531 + LRK53_RS11000 0.88 -1.6
2,458,571 + +0.3
2,458,572 - -1.7
2,458,662 - +0.1
2,458,662 - -1.1
2,458,662 - -0.8
2,458,682 - +0.2
2,458,682 - -0.2
2,458,753 + -1.7
2,458,753 + -0.4
2,458,882 + LRK53_RS11005 0.17 -0.4
2,458,883 - LRK53_RS11005 0.17 +0.5
2,458,883 - LRK53_RS11005 0.17 +0.3
2,458,883 - LRK53_RS11005 0.17 +0.9
2,458,895 + LRK53_RS11005 0.26 +2.0
2,458,896 - LRK53_RS11005 0.27 +1.3
2,458,896 - LRK53_RS11005 0.27 +0.1
2,458,896 - LRK53_RS11005 0.27 -2.9
2,458,997 + +0.4
2,459,053 + -0.8
2,459,053 + +1.8
2,459,053 + -0.9
2,459,053 + -1.5
2,459,135 + +1.5
2,459,135 + +0.3
2,459,135 + +0.3
2,459,135 + +0.1
2,459,136 - -0.2
2,459,136 - -0.4
2,459,271 + -2.7
2,459,272 - +0.6
2,459,272 - -0.3
2,459,310 + +0.0
2,459,310 + -0.5
2,459,310 + -0.4
2,459,310 + -1.2
2,459,311 - -0.2
2,459,373 + -0.1
2,459,373 + -0.2
2,459,374 - +0.2
2,459,395 - -0.4
2,459,395 - +0.4
2,459,473 - -2.0
2,459,643 + LRK53_RS11010 0.14 +0.1
2,459,643 + LRK53_RS11010 0.14 +0.1
2,459,644 - LRK53_RS11010 0.14 +1.2
2,459,668 - LRK53_RS11010 0.15 -0.7
2,459,836 - LRK53_RS11010 0.20 +1.2
2,459,836 - LRK53_RS11010 0.20 -0.5
2,459,878 - LRK53_RS11010 0.22 +0.2
2,459,878 - LRK53_RS11010 0.22 -0.3
2,459,985 + LRK53_RS11010 0.25 -0.4
2,459,985 + LRK53_RS11010 0.25 -2.1
2,459,985 + LRK53_RS11010 0.25 -1.2
2,459,985 + LRK53_RS11010 0.25 -0.6
2,459,985 + LRK53_RS11010 0.25 +0.2
2,459,985 + LRK53_RS11010 0.25 +2.4
2,459,985 + LRK53_RS11010 0.25 -0.3
2,459,986 - LRK53_RS11010 0.25 -1.3
2,459,986 - LRK53_RS11010 0.25 -1.6
2,459,986 - LRK53_RS11010 0.25 -1.3
2,459,986 - LRK53_RS11010 0.25 -1.4
2,459,986 - LRK53_RS11010 0.25 +0.2
2,459,986 - LRK53_RS11010 0.25 -1.5
2,459,986 - LRK53_RS11010 0.25 -1.9
2,459,988 + LRK53_RS11010 0.25 +0.4
2,459,988 + LRK53_RS11010 0.25 -0.1
2,459,988 + LRK53_RS11010 0.25 -1.3
2,459,988 + LRK53_RS11010 0.25 -0.8
2,459,988 + LRK53_RS11010 0.25 +0.1
2,459,988 + LRK53_RS11010 0.25 +0.3
2,459,988 + LRK53_RS11010 0.25 +0.3
2,459,989 - LRK53_RS11010 0.25 +0.3
2,459,989 - LRK53_RS11010 0.25 +0.7
2,459,989 - LRK53_RS11010 0.25 -0.6
2,459,989 - LRK53_RS11010 0.25 +0.1
2,459,989 - LRK53_RS11010 0.25 -2.3

Or see this region's nucleotide sequence