Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11000 and LRK53_RS11005 are separated by 103 nucleotides LRK53_RS11005 and LRK53_RS11010 are separated by 211 nucleotides
LRK53_RS11000: LRK53_RS11000 - LTA synthase family protein, at 2,456,806 to 2,458,755
_RS11000
LRK53_RS11005: LRK53_RS11005 - Tn3 family resolvase, at 2,458,859 to 2,458,996
_RS11005
LRK53_RS11010: LRK53_RS11010 - Tn3 family transposase, at 2,459,208 to 2,462,309
_RS11010
Position (kb)
2458
2459 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2457.907 kb on + strand, within LRK53_RS11000 at 2457.907 kb on + strand, within LRK53_RS11000 at 2457.907 kb on + strand, within LRK53_RS11000 at 2457.908 kb on - strand, within LRK53_RS11000 at 2457.940 kb on + strand, within LRK53_RS11000 at 2457.941 kb on - strand, within LRK53_RS11000 at 2457.958 kb on + strand, within LRK53_RS11000 at 2457.959 kb on - strand, within LRK53_RS11000 at 2457.979 kb on + strand, within LRK53_RS11000 at 2458.153 kb on + strand, within LRK53_RS11000 at 2458.153 kb on + strand, within LRK53_RS11000 at 2458.154 kb on - strand, within LRK53_RS11000 at 2458.213 kb on + strand, within LRK53_RS11000 at 2458.214 kb on - strand, within LRK53_RS11000 at 2458.214 kb on - strand, within LRK53_RS11000 at 2458.214 kb on - strand, within LRK53_RS11000 at 2458.214 kb on - strand, within LRK53_RS11000 at 2458.264 kb on + strand, within LRK53_RS11000 at 2458.264 kb on + strand, within LRK53_RS11000 at 2458.280 kb on + strand, within LRK53_RS11000 at 2458.281 kb on - strand, within LRK53_RS11000 at 2458.281 kb on - strand, within LRK53_RS11000 at 2458.531 kb on + strand, within LRK53_RS11000 at 2458.571 kb on + strand at 2458.572 kb on - strand at 2458.662 kb on - strand at 2458.662 kb on - strand at 2458.662 kb on - strand at 2458.682 kb on - strand at 2458.682 kb on - strand at 2458.753 kb on + strand at 2458.753 kb on + strand at 2458.882 kb on + strand, within LRK53_RS11005 at 2458.883 kb on - strand, within LRK53_RS11005 at 2458.883 kb on - strand, within LRK53_RS11005 at 2458.883 kb on - strand, within LRK53_RS11005 at 2458.895 kb on + strand, within LRK53_RS11005 at 2458.896 kb on - strand, within LRK53_RS11005 at 2458.896 kb on - strand, within LRK53_RS11005 at 2458.896 kb on - strand, within LRK53_RS11005 at 2458.997 kb on + strand at 2459.053 kb on + strand at 2459.053 kb on + strand at 2459.053 kb on + strand at 2459.053 kb on + strand at 2459.135 kb on + strand at 2459.135 kb on + strand at 2459.135 kb on + strand at 2459.135 kb on + strand at 2459.136 kb on - strand at 2459.136 kb on - strand at 2459.271 kb on + strand at 2459.272 kb on - strand at 2459.272 kb on - strand at 2459.310 kb on + strand at 2459.310 kb on + strand at 2459.310 kb on + strand at 2459.310 kb on + strand at 2459.311 kb on - strand at 2459.373 kb on + strand at 2459.373 kb on + strand at 2459.374 kb on - strand at 2459.395 kb on - strand at 2459.395 kb on - strand at 2459.473 kb on - strand at 2459.643 kb on + strand, within LRK53_RS11010 at 2459.643 kb on + strand, within LRK53_RS11010 at 2459.644 kb on - strand, within LRK53_RS11010 at 2459.668 kb on - strand, within LRK53_RS11010 at 2459.836 kb on - strand, within LRK53_RS11010 at 2459.836 kb on - strand, within LRK53_RS11010 at 2459.878 kb on - strand, within LRK53_RS11010 at 2459.878 kb on - strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.985 kb on + strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.986 kb on - strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.988 kb on + strand, within LRK53_RS11010 at 2459.989 kb on - strand, within LRK53_RS11010 at 2459.989 kb on - strand, within LRK53_RS11010 at 2459.989 kb on - strand, within LRK53_RS11010 at 2459.989 kb on - strand, within LRK53_RS11010 at 2459.989 kb on - strand, within LRK53_RS11010
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,457,907 + LRK53_RS11000 0.56 +1.0 2,457,907 + LRK53_RS11000 0.56 -2.0 2,457,907 + LRK53_RS11000 0.56 +0.3 2,457,908 - LRK53_RS11000 0.57 +0.6 2,457,940 + LRK53_RS11000 0.58 -0.2 2,457,941 - LRK53_RS11000 0.58 -0.9 2,457,958 + LRK53_RS11000 0.59 -1.0 2,457,959 - LRK53_RS11000 0.59 +2.4 2,457,979 + LRK53_RS11000 0.60 +0.2 2,458,153 + LRK53_RS11000 0.69 -0.3 2,458,153 + LRK53_RS11000 0.69 +0.2 2,458,154 - LRK53_RS11000 0.69 +0.2 2,458,213 + LRK53_RS11000 0.72 +0.9 2,458,214 - LRK53_RS11000 0.72 -0.5 2,458,214 - LRK53_RS11000 0.72 +1.2 2,458,214 - LRK53_RS11000 0.72 +0.2 2,458,214 - LRK53_RS11000 0.72 +0.5 2,458,264 + LRK53_RS11000 0.75 +0.3 2,458,264 + LRK53_RS11000 0.75 -1.2 2,458,280 + LRK53_RS11000 0.76 -0.5 2,458,281 - LRK53_RS11000 0.76 +0.1 2,458,281 - LRK53_RS11000 0.76 -1.1 2,458,531 + LRK53_RS11000 0.88 -1.6 2,458,571 + +0.3 2,458,572 - -1.7 2,458,662 - +0.1 2,458,662 - -1.1 2,458,662 - -0.8 2,458,682 - +0.2 2,458,682 - -0.2 2,458,753 + -1.7 2,458,753 + -0.4 2,458,882 + LRK53_RS11005 0.17 -0.4 2,458,883 - LRK53_RS11005 0.17 +0.5 2,458,883 - LRK53_RS11005 0.17 +0.3 2,458,883 - LRK53_RS11005 0.17 +0.9 2,458,895 + LRK53_RS11005 0.26 +2.0 2,458,896 - LRK53_RS11005 0.27 +1.3 2,458,896 - LRK53_RS11005 0.27 +0.1 2,458,896 - LRK53_RS11005 0.27 -2.9 2,458,997 + +0.4 2,459,053 + -0.8 2,459,053 + +1.8 2,459,053 + -0.9 2,459,053 + -1.5 2,459,135 + +1.5 2,459,135 + +0.3 2,459,135 + +0.3 2,459,135 + +0.1 2,459,136 - -0.2 2,459,136 - -0.4 2,459,271 + -2.7 2,459,272 - +0.6 2,459,272 - -0.3 2,459,310 + +0.0 2,459,310 + -0.5 2,459,310 + -0.4 2,459,310 + -1.2 2,459,311 - -0.2 2,459,373 + -0.1 2,459,373 + -0.2 2,459,374 - +0.2 2,459,395 - -0.4 2,459,395 - +0.4 2,459,473 - -2.0 2,459,643 + LRK53_RS11010 0.14 +0.1 2,459,643 + LRK53_RS11010 0.14 +0.1 2,459,644 - LRK53_RS11010 0.14 +1.2 2,459,668 - LRK53_RS11010 0.15 -0.7 2,459,836 - LRK53_RS11010 0.20 +1.2 2,459,836 - LRK53_RS11010 0.20 -0.5 2,459,878 - LRK53_RS11010 0.22 +0.2 2,459,878 - LRK53_RS11010 0.22 -0.3 2,459,985 + LRK53_RS11010 0.25 -0.4 2,459,985 + LRK53_RS11010 0.25 -2.1 2,459,985 + LRK53_RS11010 0.25 -1.2 2,459,985 + LRK53_RS11010 0.25 -0.6 2,459,985 + LRK53_RS11010 0.25 +0.2 2,459,985 + LRK53_RS11010 0.25 +2.4 2,459,985 + LRK53_RS11010 0.25 -0.3 2,459,986 - LRK53_RS11010 0.25 -1.3 2,459,986 - LRK53_RS11010 0.25 -1.6 2,459,986 - LRK53_RS11010 0.25 -1.3 2,459,986 - LRK53_RS11010 0.25 -1.4 2,459,986 - LRK53_RS11010 0.25 +0.2 2,459,986 - LRK53_RS11010 0.25 -1.5 2,459,986 - LRK53_RS11010 0.25 -1.9 2,459,988 + LRK53_RS11010 0.25 +0.4 2,459,988 + LRK53_RS11010 0.25 -0.1 2,459,988 + LRK53_RS11010 0.25 -1.3 2,459,988 + LRK53_RS11010 0.25 -0.8 2,459,988 + LRK53_RS11010 0.25 +0.1 2,459,988 + LRK53_RS11010 0.25 +0.3 2,459,988 + LRK53_RS11010 0.25 +0.3 2,459,989 - LRK53_RS11010 0.25 +0.3 2,459,989 - LRK53_RS11010 0.25 +0.7 2,459,989 - LRK53_RS11010 0.25 -0.6 2,459,989 - LRK53_RS11010 0.25 +0.1 2,459,989 - LRK53_RS11010 0.25 -2.3
Or see this region's nucleotide sequence