Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10820 and LRK53_RS10825 are separated by 333 nucleotides LRK53_RS10825 and LRK53_RS10830 are separated by 30 nucleotides LRK53_RS10830 and LRK53_RS10835 are separated by 109 nucleotides
LRK53_RS10820: LRK53_RS10820 - DUF190 domain-containing protein, at 2,414,862 to 2,415,329
_RS10820
LRK53_RS10825: LRK53_RS10825 - DUF190 domain-containing protein, at 2,415,663 to 2,415,986
_RS10825
LRK53_RS10830: LRK53_RS10830 - hypothetical protein, at 2,416,017 to 2,417,291
_RS10830
LRK53_RS10835: LRK53_RS10835 - Tn3 family transposase, at 2,417,401 to 2,420,394
_RS10835
Position (kb)
2416
2417
2418 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2415.052 kb on + strand, within LRK53_RS10820 at 2415.053 kb on - strand, within LRK53_RS10820 at 2415.053 kb on - strand, within LRK53_RS10820 at 2415.053 kb on - strand, within LRK53_RS10820 at 2415.060 kb on + strand, within LRK53_RS10820 at 2415.060 kb on + strand, within LRK53_RS10820 at 2415.060 kb on + strand, within LRK53_RS10820 at 2415.061 kb on - strand, within LRK53_RS10820 at 2415.061 kb on - strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.095 kb on + strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.096 kb on - strand, within LRK53_RS10820 at 2415.188 kb on + strand, within LRK53_RS10820 at 2415.188 kb on + strand, within LRK53_RS10820 at 2415.188 kb on + strand, within LRK53_RS10820 at 2415.188 kb on + strand, within LRK53_RS10820 at 2415.189 kb on - strand, within LRK53_RS10820 at 2415.189 kb on - strand, within LRK53_RS10820 at 2415.189 kb on - strand, within LRK53_RS10820 at 2415.327 kb on + strand at 2415.327 kb on + strand at 2415.328 kb on - strand at 2415.328 kb on - strand at 2415.328 kb on - strand at 2415.328 kb on - strand at 2415.328 kb on - strand at 2415.348 kb on + strand at 2415.348 kb on + strand at 2415.349 kb on - strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.362 kb on + strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.363 kb on - strand at 2415.451 kb on - strand at 2415.451 kb on - strand at 2415.472 kb on + strand at 2415.472 kb on + strand at 2415.472 kb on + strand at 2415.687 kb on + strand at 2415.687 kb on + strand at 2415.688 kb on - strand at 2415.688 kb on - strand at 2415.726 kb on - strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.729 kb on + strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.730 kb on - strand, within LRK53_RS10825 at 2415.801 kb on + strand, within LRK53_RS10825 at 2415.801 kb on + strand, within LRK53_RS10825 at 2415.801 kb on + strand, within LRK53_RS10825 at 2415.802 kb on - strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.839 kb on + strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2415.840 kb on - strand, within LRK53_RS10825 at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.013 kb on + strand at 2416.014 kb on - strand at 2416.029 kb on - strand at 2416.029 kb on - strand at 2416.029 kb on - strand at 2416.223 kb on - strand, within LRK53_RS10830 at 2416.319 kb on - strand, within LRK53_RS10830 at 2416.505 kb on + strand, within LRK53_RS10830 at 2416.506 kb on - strand, within LRK53_RS10830 at 2416.531 kb on - strand, within LRK53_RS10830 at 2416.572 kb on - strand, within LRK53_RS10830 at 2416.572 kb on - strand, within LRK53_RS10830 at 2416.572 kb on - strand, within LRK53_RS10830 at 2416.572 kb on - strand, within LRK53_RS10830 at 2416.572 kb on - strand, within LRK53_RS10830 at 2416.643 kb on + strand, within LRK53_RS10830 at 2416.644 kb on - strand, within LRK53_RS10830 at 2416.644 kb on - strand, within LRK53_RS10830 at 2416.873 kb on + strand, within LRK53_RS10830 at 2416.874 kb on - strand, within LRK53_RS10830 at 2416.874 kb on - strand, within LRK53_RS10830 at 2416.874 kb on - strand, within LRK53_RS10830 at 2416.874 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.014 kb on - strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.041 kb on + strand, within LRK53_RS10830 at 2417.042 kb on - strand, within LRK53_RS10830 at 2417.042 kb on - strand, within LRK53_RS10830 at 2417.042 kb on - strand, within LRK53_RS10830 at 2417.042 kb on - strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.045 kb on + strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.046 kb on - strand, within LRK53_RS10830 at 2417.093 kb on + strand, within LRK53_RS10830 at 2417.094 kb on - strand, within LRK53_RS10830 at 2417.094 kb on - strand, within LRK53_RS10830 at 2417.194 kb on + strand at 2417.194 kb on + strand at 2417.194 kb on + strand at 2417.194 kb on + strand at 2417.194 kb on + strand at 2417.194 kb on + strand at 2417.195 kb on - strand at 2417.195 kb on - strand at 2417.195 kb on - strand at 2417.280 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,415,052 + LRK53_RS10820 0.41 -0.9 2,415,053 - LRK53_RS10820 0.41 +2.4 2,415,053 - LRK53_RS10820 0.41 +1.6 2,415,053 - LRK53_RS10820 0.41 -0.2 2,415,060 + LRK53_RS10820 0.42 -0.7 2,415,060 + LRK53_RS10820 0.42 -0.4 2,415,060 + LRK53_RS10820 0.42 +0.5 2,415,061 - LRK53_RS10820 0.43 +0.9 2,415,061 - LRK53_RS10820 0.43 -0.4 2,415,095 + LRK53_RS10820 0.50 -1.5 2,415,095 + LRK53_RS10820 0.50 -0.1 2,415,095 + LRK53_RS10820 0.50 +1.2 2,415,095 + LRK53_RS10820 0.50 -0.1 2,415,095 + LRK53_RS10820 0.50 -1.5 2,415,095 + LRK53_RS10820 0.50 -1.8 2,415,095 + LRK53_RS10820 0.50 -1.3 2,415,096 - LRK53_RS10820 0.50 -0.6 2,415,096 - LRK53_RS10820 0.50 -1.0 2,415,096 - LRK53_RS10820 0.50 -0.0 2,415,096 - LRK53_RS10820 0.50 -0.9 2,415,096 - LRK53_RS10820 0.50 -1.0 2,415,096 - LRK53_RS10820 0.50 +0.6 2,415,096 - LRK53_RS10820 0.50 -0.2 2,415,096 - LRK53_RS10820 0.50 -0.4 2,415,188 + LRK53_RS10820 0.70 -0.4 2,415,188 + LRK53_RS10820 0.70 -0.8 2,415,188 + LRK53_RS10820 0.70 -0.2 2,415,188 + LRK53_RS10820 0.70 -1.5 2,415,189 - LRK53_RS10820 0.70 +2.0 2,415,189 - LRK53_RS10820 0.70 -0.9 2,415,189 - LRK53_RS10820 0.70 +0.4 2,415,327 + -1.1 2,415,327 + -1.3 2,415,328 - +0.1 2,415,328 - -0.1 2,415,328 - +0.6 2,415,328 - -0.5 2,415,328 - +0.8 2,415,348 + -0.8 2,415,348 + -2.2 2,415,349 - +1.9 2,415,362 + +0.5 2,415,362 + -1.1 2,415,362 + -1.4 2,415,362 + +0.9 2,415,362 + +0.0 2,415,362 + -0.6 2,415,362 + -1.1 2,415,362 + -1.0 2,415,362 + -0.2 2,415,362 + +2.6 2,415,362 + +0.4 2,415,362 + -2.3 2,415,363 - -0.7 2,415,363 - +0.5 2,415,363 - -0.2 2,415,363 - -2.2 2,415,363 - -0.9 2,415,363 - -1.2 2,415,363 - -0.3 2,415,363 - -0.1 2,415,451 - +0.4 2,415,451 - -1.9 2,415,472 + -0.9 2,415,472 + -2.4 2,415,472 + -1.4 2,415,687 + +0.3 2,415,687 + +0.4 2,415,688 - +1.4 2,415,688 - -0.6 2,415,726 - LRK53_RS10825 0.19 +2.0 2,415,729 + LRK53_RS10825 0.20 -1.3 2,415,729 + LRK53_RS10825 0.20 +1.8 2,415,729 + LRK53_RS10825 0.20 -1.2 2,415,729 + LRK53_RS10825 0.20 -0.6 2,415,729 + LRK53_RS10825 0.20 +0.9 2,415,729 + LRK53_RS10825 0.20 -1.3 2,415,730 - LRK53_RS10825 0.21 -2.3 2,415,730 - LRK53_RS10825 0.21 +1.1 2,415,730 - LRK53_RS10825 0.21 +1.9 2,415,730 - LRK53_RS10825 0.21 +1.4 2,415,730 - LRK53_RS10825 0.21 +1.9 2,415,730 - LRK53_RS10825 0.21 +0.3 2,415,730 - LRK53_RS10825 0.21 +0.3 2,415,730 - LRK53_RS10825 0.21 -0.8 2,415,801 + LRK53_RS10825 0.43 -0.0 2,415,801 + LRK53_RS10825 0.43 -0.6 2,415,801 + LRK53_RS10825 0.43 +0.3 2,415,802 - LRK53_RS10825 0.43 -0.9 2,415,839 + LRK53_RS10825 0.54 -0.3 2,415,839 + LRK53_RS10825 0.54 -0.5 2,415,839 + LRK53_RS10825 0.54 +0.0 2,415,839 + LRK53_RS10825 0.54 +0.1 2,415,839 + LRK53_RS10825 0.54 -2.4 2,415,839 + LRK53_RS10825 0.54 +0.8 2,415,839 + LRK53_RS10825 0.54 -1.2 2,415,839 + LRK53_RS10825 0.54 -0.0 2,415,839 + LRK53_RS10825 0.54 -0.4 2,415,839 + LRK53_RS10825 0.54 -0.6 2,415,839 + LRK53_RS10825 0.54 -0.1 2,415,839 + LRK53_RS10825 0.54 -1.7 2,415,839 + LRK53_RS10825 0.54 -0.5 2,415,839 + LRK53_RS10825 0.54 -2.0 2,415,839 + LRK53_RS10825 0.54 -0.5 2,415,839 + LRK53_RS10825 0.54 +0.8 2,415,839 + LRK53_RS10825 0.54 -3.2 2,415,839 + LRK53_RS10825 0.54 +0.1 2,415,839 + LRK53_RS10825 0.54 -0.2 2,415,840 - LRK53_RS10825 0.55 -0.2 2,415,840 - LRK53_RS10825 0.55 -2.3 2,415,840 - LRK53_RS10825 0.55 -1.3 2,415,840 - LRK53_RS10825 0.55 -0.4 2,415,840 - LRK53_RS10825 0.55 +0.4 2,415,840 - LRK53_RS10825 0.55 -1.3 2,415,840 - LRK53_RS10825 0.55 +0.6 2,416,013 + +1.2 2,416,013 + +1.4 2,416,013 + -1.0 2,416,013 + -0.4 2,416,013 + -1.4 2,416,013 + -2.2 2,416,013 + -0.2 2,416,013 + -0.4 2,416,014 - -2.3 2,416,029 - +0.1 2,416,029 - -1.4 2,416,029 - +1.3 2,416,223 - LRK53_RS10830 0.16 -1.3 2,416,319 - LRK53_RS10830 0.24 +0.8 2,416,505 + LRK53_RS10830 0.38 +0.2 2,416,506 - LRK53_RS10830 0.38 -0.7 2,416,531 - LRK53_RS10830 0.40 -1.4 2,416,572 - LRK53_RS10830 0.44 -1.4 2,416,572 - LRK53_RS10830 0.44 +0.3 2,416,572 - LRK53_RS10830 0.44 +0.7 2,416,572 - LRK53_RS10830 0.44 -1.3 2,416,572 - LRK53_RS10830 0.44 +0.1 2,416,643 + LRK53_RS10830 0.49 -0.0 2,416,644 - LRK53_RS10830 0.49 -0.1 2,416,644 - LRK53_RS10830 0.49 +1.7 2,416,873 + LRK53_RS10830 0.67 +1.1 2,416,874 - LRK53_RS10830 0.67 -0.8 2,416,874 - LRK53_RS10830 0.67 +3.2 2,416,874 - LRK53_RS10830 0.67 -0.5 2,416,874 - LRK53_RS10830 0.67 -0.8 2,417,014 - LRK53_RS10830 0.78 +1.2 2,417,014 - LRK53_RS10830 0.78 -0.4 2,417,014 - LRK53_RS10830 0.78 +0.8 2,417,014 - LRK53_RS10830 0.78 +1.5 2,417,014 - LRK53_RS10830 0.78 +0.8 2,417,014 - LRK53_RS10830 0.78 -1.7 2,417,041 + LRK53_RS10830 0.80 +2.1 2,417,041 + LRK53_RS10830 0.80 -0.4 2,417,041 + LRK53_RS10830 0.80 -0.2 2,417,041 + LRK53_RS10830 0.80 +0.1 2,417,041 + LRK53_RS10830 0.80 -3.4 2,417,041 + LRK53_RS10830 0.80 +0.5 2,417,042 - LRK53_RS10830 0.80 -2.6 2,417,042 - LRK53_RS10830 0.80 -0.4 2,417,042 - LRK53_RS10830 0.80 -0.1 2,417,042 - LRK53_RS10830 0.80 +0.2 2,417,045 + LRK53_RS10830 0.81 -0.9 2,417,045 + LRK53_RS10830 0.81 +3.2 2,417,045 + LRK53_RS10830 0.81 -0.7 2,417,045 + LRK53_RS10830 0.81 +1.6 2,417,045 + LRK53_RS10830 0.81 +1.5 2,417,045 + LRK53_RS10830 0.81 -0.2 2,417,045 + LRK53_RS10830 0.81 -0.1 2,417,046 - LRK53_RS10830 0.81 -1.3 2,417,046 - LRK53_RS10830 0.81 +0.6 2,417,046 - LRK53_RS10830 0.81 +0.7 2,417,046 - LRK53_RS10830 0.81 -0.0 2,417,046 - LRK53_RS10830 0.81 -0.8 2,417,046 - LRK53_RS10830 0.81 -0.2 2,417,046 - LRK53_RS10830 0.81 +1.0 2,417,046 - LRK53_RS10830 0.81 +0.1 2,417,093 + LRK53_RS10830 0.84 +0.3 2,417,094 - LRK53_RS10830 0.84 +0.1 2,417,094 - LRK53_RS10830 0.84 +0.1 2,417,194 + +1.2 2,417,194 + +0.7 2,417,194 + -1.0 2,417,194 + -0.6 2,417,194 + -1.8 2,417,194 + -0.5 2,417,195 - +0.6 2,417,195 - +0.7 2,417,195 - -2.4 2,417,280 - -0.0
Or see this region's nucleotide sequence