Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10830

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS10820 and LRK53_RS10825 are separated by 333 nucleotidesLRK53_RS10825 and LRK53_RS10830 are separated by 30 nucleotidesLRK53_RS10830 and LRK53_RS10835 are separated by 109 nucleotides LRK53_RS10820: LRK53_RS10820 - DUF190 domain-containing protein, at 2,414,862 to 2,415,329 _RS10820 LRK53_RS10825: LRK53_RS10825 - DUF190 domain-containing protein, at 2,415,663 to 2,415,986 _RS10825 LRK53_RS10830: LRK53_RS10830 - hypothetical protein, at 2,416,017 to 2,417,291 _RS10830 LRK53_RS10835: LRK53_RS10835 - Tn3 family transposase, at 2,417,401 to 2,420,394 _RS10835 Position (kb) 2416 2417 2418Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2415.052 kb on + strand, within LRK53_RS10820at 2415.053 kb on - strand, within LRK53_RS10820at 2415.053 kb on - strand, within LRK53_RS10820at 2415.053 kb on - strand, within LRK53_RS10820at 2415.060 kb on + strand, within LRK53_RS10820at 2415.060 kb on + strand, within LRK53_RS10820at 2415.060 kb on + strand, within LRK53_RS10820at 2415.061 kb on - strand, within LRK53_RS10820at 2415.061 kb on - strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.095 kb on + strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.096 kb on - strand, within LRK53_RS10820at 2415.188 kb on + strand, within LRK53_RS10820at 2415.188 kb on + strand, within LRK53_RS10820at 2415.188 kb on + strand, within LRK53_RS10820at 2415.188 kb on + strand, within LRK53_RS10820at 2415.189 kb on - strand, within LRK53_RS10820at 2415.189 kb on - strand, within LRK53_RS10820at 2415.189 kb on - strand, within LRK53_RS10820at 2415.327 kb on + strandat 2415.327 kb on + strandat 2415.328 kb on - strandat 2415.328 kb on - strandat 2415.328 kb on - strandat 2415.328 kb on - strandat 2415.328 kb on - strandat 2415.348 kb on + strandat 2415.348 kb on + strandat 2415.349 kb on - strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.362 kb on + strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.363 kb on - strandat 2415.451 kb on - strandat 2415.451 kb on - strandat 2415.472 kb on + strandat 2415.472 kb on + strandat 2415.472 kb on + strandat 2415.687 kb on + strandat 2415.687 kb on + strandat 2415.688 kb on - strandat 2415.688 kb on - strandat 2415.726 kb on - strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.729 kb on + strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.730 kb on - strand, within LRK53_RS10825at 2415.801 kb on + strand, within LRK53_RS10825at 2415.801 kb on + strand, within LRK53_RS10825at 2415.801 kb on + strand, within LRK53_RS10825at 2415.802 kb on - strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.839 kb on + strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2415.840 kb on - strand, within LRK53_RS10825at 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.013 kb on + strandat 2416.014 kb on - strandat 2416.029 kb on - strandat 2416.029 kb on - strandat 2416.029 kb on - strandat 2416.223 kb on - strand, within LRK53_RS10830at 2416.319 kb on - strand, within LRK53_RS10830at 2416.505 kb on + strand, within LRK53_RS10830at 2416.506 kb on - strand, within LRK53_RS10830at 2416.531 kb on - strand, within LRK53_RS10830at 2416.572 kb on - strand, within LRK53_RS10830at 2416.572 kb on - strand, within LRK53_RS10830at 2416.572 kb on - strand, within LRK53_RS10830at 2416.572 kb on - strand, within LRK53_RS10830at 2416.572 kb on - strand, within LRK53_RS10830at 2416.643 kb on + strand, within LRK53_RS10830at 2416.644 kb on - strand, within LRK53_RS10830at 2416.644 kb on - strand, within LRK53_RS10830at 2416.873 kb on + strand, within LRK53_RS10830at 2416.874 kb on - strand, within LRK53_RS10830at 2416.874 kb on - strand, within LRK53_RS10830at 2416.874 kb on - strand, within LRK53_RS10830at 2416.874 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.014 kb on - strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.041 kb on + strand, within LRK53_RS10830at 2417.042 kb on - strand, within LRK53_RS10830at 2417.042 kb on - strand, within LRK53_RS10830at 2417.042 kb on - strand, within LRK53_RS10830at 2417.042 kb on - strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.045 kb on + strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.046 kb on - strand, within LRK53_RS10830at 2417.093 kb on + strand, within LRK53_RS10830at 2417.094 kb on - strand, within LRK53_RS10830at 2417.094 kb on - strand, within LRK53_RS10830at 2417.194 kb on + strandat 2417.194 kb on + strandat 2417.194 kb on + strandat 2417.194 kb on + strandat 2417.194 kb on + strandat 2417.194 kb on + strandat 2417.195 kb on - strandat 2417.195 kb on - strandat 2417.195 kb on - strandat 2417.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,415,052 + LRK53_RS10820 0.41 -0.9
2,415,053 - LRK53_RS10820 0.41 +2.4
2,415,053 - LRK53_RS10820 0.41 +1.6
2,415,053 - LRK53_RS10820 0.41 -0.2
2,415,060 + LRK53_RS10820 0.42 -0.7
2,415,060 + LRK53_RS10820 0.42 -0.4
2,415,060 + LRK53_RS10820 0.42 +0.5
2,415,061 - LRK53_RS10820 0.43 +0.9
2,415,061 - LRK53_RS10820 0.43 -0.4
2,415,095 + LRK53_RS10820 0.50 -1.5
2,415,095 + LRK53_RS10820 0.50 -0.1
2,415,095 + LRK53_RS10820 0.50 +1.2
2,415,095 + LRK53_RS10820 0.50 -0.1
2,415,095 + LRK53_RS10820 0.50 -1.5
2,415,095 + LRK53_RS10820 0.50 -1.8
2,415,095 + LRK53_RS10820 0.50 -1.3
2,415,096 - LRK53_RS10820 0.50 -0.6
2,415,096 - LRK53_RS10820 0.50 -1.0
2,415,096 - LRK53_RS10820 0.50 -0.0
2,415,096 - LRK53_RS10820 0.50 -0.9
2,415,096 - LRK53_RS10820 0.50 -1.0
2,415,096 - LRK53_RS10820 0.50 +0.6
2,415,096 - LRK53_RS10820 0.50 -0.2
2,415,096 - LRK53_RS10820 0.50 -0.4
2,415,188 + LRK53_RS10820 0.70 -0.4
2,415,188 + LRK53_RS10820 0.70 -0.8
2,415,188 + LRK53_RS10820 0.70 -0.2
2,415,188 + LRK53_RS10820 0.70 -1.5
2,415,189 - LRK53_RS10820 0.70 +2.0
2,415,189 - LRK53_RS10820 0.70 -0.9
2,415,189 - LRK53_RS10820 0.70 +0.4
2,415,327 + -1.1
2,415,327 + -1.3
2,415,328 - +0.1
2,415,328 - -0.1
2,415,328 - +0.6
2,415,328 - -0.5
2,415,328 - +0.8
2,415,348 + -0.8
2,415,348 + -2.2
2,415,349 - +1.9
2,415,362 + +0.5
2,415,362 + -1.1
2,415,362 + -1.4
2,415,362 + +0.9
2,415,362 + +0.0
2,415,362 + -0.6
2,415,362 + -1.1
2,415,362 + -1.0
2,415,362 + -0.2
2,415,362 + +2.6
2,415,362 + +0.4
2,415,362 + -2.3
2,415,363 - -0.7
2,415,363 - +0.5
2,415,363 - -0.2
2,415,363 - -2.2
2,415,363 - -0.9
2,415,363 - -1.2
2,415,363 - -0.3
2,415,363 - -0.1
2,415,451 - +0.4
2,415,451 - -1.9
2,415,472 + -0.9
2,415,472 + -2.4
2,415,472 + -1.4
2,415,687 + +0.3
2,415,687 + +0.4
2,415,688 - +1.4
2,415,688 - -0.6
2,415,726 - LRK53_RS10825 0.19 +2.0
2,415,729 + LRK53_RS10825 0.20 -1.3
2,415,729 + LRK53_RS10825 0.20 +1.8
2,415,729 + LRK53_RS10825 0.20 -1.2
2,415,729 + LRK53_RS10825 0.20 -0.6
2,415,729 + LRK53_RS10825 0.20 +0.9
2,415,729 + LRK53_RS10825 0.20 -1.3
2,415,730 - LRK53_RS10825 0.21 -2.3
2,415,730 - LRK53_RS10825 0.21 +1.1
2,415,730 - LRK53_RS10825 0.21 +1.9
2,415,730 - LRK53_RS10825 0.21 +1.4
2,415,730 - LRK53_RS10825 0.21 +1.9
2,415,730 - LRK53_RS10825 0.21 +0.3
2,415,730 - LRK53_RS10825 0.21 +0.3
2,415,730 - LRK53_RS10825 0.21 -0.8
2,415,801 + LRK53_RS10825 0.43 -0.0
2,415,801 + LRK53_RS10825 0.43 -0.6
2,415,801 + LRK53_RS10825 0.43 +0.3
2,415,802 - LRK53_RS10825 0.43 -0.9
2,415,839 + LRK53_RS10825 0.54 -0.3
2,415,839 + LRK53_RS10825 0.54 -0.5
2,415,839 + LRK53_RS10825 0.54 +0.0
2,415,839 + LRK53_RS10825 0.54 +0.1
2,415,839 + LRK53_RS10825 0.54 -2.4
2,415,839 + LRK53_RS10825 0.54 +0.8
2,415,839 + LRK53_RS10825 0.54 -1.2
2,415,839 + LRK53_RS10825 0.54 -0.0
2,415,839 + LRK53_RS10825 0.54 -0.4
2,415,839 + LRK53_RS10825 0.54 -0.6
2,415,839 + LRK53_RS10825 0.54 -0.1
2,415,839 + LRK53_RS10825 0.54 -1.7
2,415,839 + LRK53_RS10825 0.54 -0.5
2,415,839 + LRK53_RS10825 0.54 -2.0
2,415,839 + LRK53_RS10825 0.54 -0.5
2,415,839 + LRK53_RS10825 0.54 +0.8
2,415,839 + LRK53_RS10825 0.54 -3.2
2,415,839 + LRK53_RS10825 0.54 +0.1
2,415,839 + LRK53_RS10825 0.54 -0.2
2,415,840 - LRK53_RS10825 0.55 -0.2
2,415,840 - LRK53_RS10825 0.55 -2.3
2,415,840 - LRK53_RS10825 0.55 -1.3
2,415,840 - LRK53_RS10825 0.55 -0.4
2,415,840 - LRK53_RS10825 0.55 +0.4
2,415,840 - LRK53_RS10825 0.55 -1.3
2,415,840 - LRK53_RS10825 0.55 +0.6
2,416,013 + +1.2
2,416,013 + +1.4
2,416,013 + -1.0
2,416,013 + -0.4
2,416,013 + -1.4
2,416,013 + -2.2
2,416,013 + -0.2
2,416,013 + -0.4
2,416,014 - -2.3
2,416,029 - +0.1
2,416,029 - -1.4
2,416,029 - +1.3
2,416,223 - LRK53_RS10830 0.16 -1.3
2,416,319 - LRK53_RS10830 0.24 +0.8
2,416,505 + LRK53_RS10830 0.38 +0.2
2,416,506 - LRK53_RS10830 0.38 -0.7
2,416,531 - LRK53_RS10830 0.40 -1.4
2,416,572 - LRK53_RS10830 0.44 -1.4
2,416,572 - LRK53_RS10830 0.44 +0.3
2,416,572 - LRK53_RS10830 0.44 +0.7
2,416,572 - LRK53_RS10830 0.44 -1.3
2,416,572 - LRK53_RS10830 0.44 +0.1
2,416,643 + LRK53_RS10830 0.49 -0.0
2,416,644 - LRK53_RS10830 0.49 -0.1
2,416,644 - LRK53_RS10830 0.49 +1.7
2,416,873 + LRK53_RS10830 0.67 +1.1
2,416,874 - LRK53_RS10830 0.67 -0.8
2,416,874 - LRK53_RS10830 0.67 +3.2
2,416,874 - LRK53_RS10830 0.67 -0.5
2,416,874 - LRK53_RS10830 0.67 -0.8
2,417,014 - LRK53_RS10830 0.78 +1.2
2,417,014 - LRK53_RS10830 0.78 -0.4
2,417,014 - LRK53_RS10830 0.78 +0.8
2,417,014 - LRK53_RS10830 0.78 +1.5
2,417,014 - LRK53_RS10830 0.78 +0.8
2,417,014 - LRK53_RS10830 0.78 -1.7
2,417,041 + LRK53_RS10830 0.80 +2.1
2,417,041 + LRK53_RS10830 0.80 -0.4
2,417,041 + LRK53_RS10830 0.80 -0.2
2,417,041 + LRK53_RS10830 0.80 +0.1
2,417,041 + LRK53_RS10830 0.80 -3.4
2,417,041 + LRK53_RS10830 0.80 +0.5
2,417,042 - LRK53_RS10830 0.80 -2.6
2,417,042 - LRK53_RS10830 0.80 -0.4
2,417,042 - LRK53_RS10830 0.80 -0.1
2,417,042 - LRK53_RS10830 0.80 +0.2
2,417,045 + LRK53_RS10830 0.81 -0.9
2,417,045 + LRK53_RS10830 0.81 +3.2
2,417,045 + LRK53_RS10830 0.81 -0.7
2,417,045 + LRK53_RS10830 0.81 +1.6
2,417,045 + LRK53_RS10830 0.81 +1.5
2,417,045 + LRK53_RS10830 0.81 -0.2
2,417,045 + LRK53_RS10830 0.81 -0.1
2,417,046 - LRK53_RS10830 0.81 -1.3
2,417,046 - LRK53_RS10830 0.81 +0.6
2,417,046 - LRK53_RS10830 0.81 +0.7
2,417,046 - LRK53_RS10830 0.81 -0.0
2,417,046 - LRK53_RS10830 0.81 -0.8
2,417,046 - LRK53_RS10830 0.81 -0.2
2,417,046 - LRK53_RS10830 0.81 +1.0
2,417,046 - LRK53_RS10830 0.81 +0.1
2,417,093 + LRK53_RS10830 0.84 +0.3
2,417,094 - LRK53_RS10830 0.84 +0.1
2,417,094 - LRK53_RS10830 0.84 +0.1
2,417,194 + +1.2
2,417,194 + +0.7
2,417,194 + -1.0
2,417,194 + -0.6
2,417,194 + -1.8
2,417,194 + -0.5
2,417,195 - +0.6
2,417,195 - +0.7
2,417,195 - -2.4
2,417,280 - -0.0

Or see this region's nucleotide sequence