Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10060

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS10050 and LRK53_RS10055 overlap by 4 nucleotidesLRK53_RS10055 and LRK53_RS10060 are separated by 22 nucleotidesLRK53_RS10060 and LRK53_RS10065 are separated by 25 nucleotides LRK53_RS10050: LRK53_RS10050 - DNA-binding domain-containing protein, at 2,248,304 to 2,249,089 _RS10050 LRK53_RS10055: LRK53_RS10055 - DoxX family protein, at 2,249,086 to 2,249,607 _RS10055 LRK53_RS10060: LRK53_RS10060 - sigma-70 family RNA polymerase sigma factor, at 2,249,630 to 2,250,232 _RS10060 LRK53_RS10065: LRK53_RS10065 - bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase, at 2,250,258 to 2,252,399 _RS10065 Position (kb) 2249 2250 2251Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2248.634 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2249.116 kb on + strandat 2249.117 kb on - strandat 2249.117 kb on - strandat 2249.119 kb on + strandat 2249.120 kb on - strandat 2249.238 kb on + strand, within LRK53_RS10055at 2249.238 kb on + strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.538 kb on + strand, within LRK53_RS10055at 2249.539 kb on - strand, within LRK53_RS10055at 2249.539 kb on - strand, within LRK53_RS10055at 2249.587 kb on - strandat 2249.658 kb on + strandat 2249.659 kb on - strandat 2249.888 kb on + strand, within LRK53_RS10060at 2249.888 kb on + strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.030 kb on - strand, within LRK53_RS10060at 2250.030 kb on - strand, within LRK53_RS10060at 2250.093 kb on - strand, within LRK53_RS10060at 2250.128 kb on + strand, within LRK53_RS10060at 2250.128 kb on + strand, within LRK53_RS10060at 2250.128 kb on + strand, within LRK53_RS10060at 2250.128 kb on + strand, within LRK53_RS10060at 2250.129 kb on - strand, within LRK53_RS10060at 2250.218 kb on + strandat 2250.218 kb on + strandat 2250.218 kb on + strandat 2250.218 kb on + strandat 2250.218 kb on + strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.219 kb on - strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.444 kb on + strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.445 kb on - strandat 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.527 kb on + strand, within LRK53_RS10065at 2250.528 kb on - strand, within LRK53_RS10065at 2250.528 kb on - strand, within LRK53_RS10065at 2250.528 kb on - strand, within LRK53_RS10065at 2250.528 kb on - strand, within LRK53_RS10065at 2250.528 kb on - strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.672 kb on + strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.673 kb on - strand, within LRK53_RS10065at 2250.686 kb on - strand, within LRK53_RS10065at 2250.762 kb on + strand, within LRK53_RS10065at 2250.763 kb on - strand, within LRK53_RS10065at 2250.948 kb on + strand, within LRK53_RS10065at 2250.948 kb on + strand, within LRK53_RS10065at 2250.948 kb on + strand, within LRK53_RS10065at 2250.948 kb on + strand, within LRK53_RS10065at 2250.949 kb on - strand, within LRK53_RS10065at 2250.949 kb on - strand, within LRK53_RS10065at 2250.949 kb on - strand, within LRK53_RS10065at 2250.949 kb on - strand, within LRK53_RS10065at 2250.991 kb on + strand, within LRK53_RS10065at 2250.991 kb on + strand, within LRK53_RS10065at 2250.992 kb on - strand, within LRK53_RS10065at 2250.992 kb on - strand, within LRK53_RS10065at 2251.029 kb on + strand, within LRK53_RS10065at 2251.029 kb on + strand, within LRK53_RS10065at 2251.029 kb on + strand, within LRK53_RS10065at 2251.029 kb on + strand, within LRK53_RS10065at 2251.030 kb on - strand, within LRK53_RS10065at 2251.030 kb on - strand, within LRK53_RS10065at 2251.030 kb on - strand, within LRK53_RS10065at 2251.030 kb on - strand, within LRK53_RS10065at 2251.058 kb on + strand, within LRK53_RS10065at 2251.100 kb on + strand, within LRK53_RS10065

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,248,634 + LRK53_RS10050 0.42 -1.8
2,248,881 + LRK53_RS10050 0.73 +0.6
2,248,881 + LRK53_RS10050 0.73 -1.2
2,248,881 + LRK53_RS10050 0.73 -1.2
2,249,116 + -1.1
2,249,117 - -2.0
2,249,117 - -1.0
2,249,119 + -0.3
2,249,120 - -1.1
2,249,238 + LRK53_RS10055 0.29 +0.2
2,249,238 + LRK53_RS10055 0.29 -3.1
2,249,239 - LRK53_RS10055 0.29 +0.6
2,249,239 - LRK53_RS10055 0.29 +0.1
2,249,239 - LRK53_RS10055 0.29 -1.0
2,249,239 - LRK53_RS10055 0.29 -1.6
2,249,245 + LRK53_RS10055 0.30 -0.1
2,249,245 + LRK53_RS10055 0.30 -0.2
2,249,245 + LRK53_RS10055 0.30 -1.7
2,249,245 + LRK53_RS10055 0.30 -1.6
2,249,245 + LRK53_RS10055 0.30 -1.5
2,249,246 - LRK53_RS10055 0.31 -1.2
2,249,246 - LRK53_RS10055 0.31 -1.2
2,249,246 - LRK53_RS10055 0.31 -0.4
2,249,246 - LRK53_RS10055 0.31 -1.3
2,249,246 - LRK53_RS10055 0.31 -0.8
2,249,246 - LRK53_RS10055 0.31 +1.6
2,249,246 - LRK53_RS10055 0.31 -0.5
2,249,246 - LRK53_RS10055 0.31 +0.8
2,249,246 - LRK53_RS10055 0.31 +0.9
2,249,246 - LRK53_RS10055 0.31 -0.1
2,249,246 - LRK53_RS10055 0.31 -1.0
2,249,264 - LRK53_RS10055 0.34 +0.0
2,249,264 - LRK53_RS10055 0.34 -0.6
2,249,264 - LRK53_RS10055 0.34 -0.2
2,249,264 - LRK53_RS10055 0.34 +1.6
2,249,270 + LRK53_RS10055 0.35 +1.2
2,249,270 + LRK53_RS10055 0.35 +0.5
2,249,270 + LRK53_RS10055 0.35 +0.3
2,249,270 + LRK53_RS10055 0.35 +0.2
2,249,270 + LRK53_RS10055 0.35 +0.6
2,249,270 + LRK53_RS10055 0.35 -0.1
2,249,270 + LRK53_RS10055 0.35 -0.6
2,249,271 - LRK53_RS10055 0.35 -0.4
2,249,271 - LRK53_RS10055 0.35 +0.0
2,249,271 - LRK53_RS10055 0.35 -0.6
2,249,271 - LRK53_RS10055 0.35 -1.3
2,249,271 - LRK53_RS10055 0.35 -1.2
2,249,386 + LRK53_RS10055 0.57 -0.8
2,249,386 + LRK53_RS10055 0.57 +0.6
2,249,386 + LRK53_RS10055 0.57 +0.0
2,249,386 + LRK53_RS10055 0.57 -0.4
2,249,386 + LRK53_RS10055 0.57 -0.4
2,249,386 + LRK53_RS10055 0.57 -0.8
2,249,386 + LRK53_RS10055 0.57 -0.9
2,249,386 + LRK53_RS10055 0.57 +2.1
2,249,386 + LRK53_RS10055 0.57 -2.0
2,249,386 + LRK53_RS10055 0.57 -0.5
2,249,386 + LRK53_RS10055 0.57 +0.0
2,249,387 - LRK53_RS10055 0.58 -1.3
2,249,387 - LRK53_RS10055 0.58 -2.8
2,249,387 - LRK53_RS10055 0.58 +0.0
2,249,387 - LRK53_RS10055 0.58 +0.5
2,249,387 - LRK53_RS10055 0.58 -1.4
2,249,387 - LRK53_RS10055 0.58 -0.8
2,249,387 - LRK53_RS10055 0.58 -1.2
2,249,387 - LRK53_RS10055 0.58 +2.0
2,249,387 - LRK53_RS10055 0.58 +0.2
2,249,387 - LRK53_RS10055 0.58 -0.4
2,249,538 + LRK53_RS10055 0.87 +0.4
2,249,539 - LRK53_RS10055 0.87 +1.0
2,249,539 - LRK53_RS10055 0.87 +0.2
2,249,587 - +1.0
2,249,658 + +2.1
2,249,659 - -1.0
2,249,888 + LRK53_RS10060 0.43 -0.6
2,249,888 + LRK53_RS10060 0.43 +2.0
2,249,889 - LRK53_RS10060 0.43 -2.6
2,249,889 - LRK53_RS10060 0.43 -0.5
2,249,889 - LRK53_RS10060 0.43 +0.4
2,250,029 + LRK53_RS10060 0.66 +0.7
2,250,029 + LRK53_RS10060 0.66 +0.2
2,250,029 + LRK53_RS10060 0.66 -0.0
2,250,029 + LRK53_RS10060 0.66 +0.9
2,250,029 + LRK53_RS10060 0.66 -0.2
2,250,030 - LRK53_RS10060 0.66 -1.1
2,250,030 - LRK53_RS10060 0.66 +0.1
2,250,093 - LRK53_RS10060 0.77 +0.6
2,250,128 + LRK53_RS10060 0.83 -0.8
2,250,128 + LRK53_RS10060 0.83 -1.9
2,250,128 + LRK53_RS10060 0.83 +1.0
2,250,128 + LRK53_RS10060 0.83 +0.6
2,250,129 - LRK53_RS10060 0.83 -1.5
2,250,218 + -0.4
2,250,218 + -0.3
2,250,218 + +0.1
2,250,218 + +1.0
2,250,218 + -1.3
2,250,219 - +0.7
2,250,219 - +0.0
2,250,219 - +1.6
2,250,219 - +0.1
2,250,219 - -0.2
2,250,219 - -0.5
2,250,219 - -1.0
2,250,219 - -1.3
2,250,219 - -0.8
2,250,444 + -1.1
2,250,444 + -0.9
2,250,444 + -0.4
2,250,444 + -0.7
2,250,444 + +1.4
2,250,444 + -1.0
2,250,444 + -1.6
2,250,444 + +2.1
2,250,444 + -1.6
2,250,444 + -0.6
2,250,444 + -0.5
2,250,444 + +0.0
2,250,444 + -1.2
2,250,444 + -0.4
2,250,444 + -0.2
2,250,444 + +0.5
2,250,444 + -2.1
2,250,444 + +0.8
2,250,444 + +2.4
2,250,444 + -0.8
2,250,444 + -2.3
2,250,444 + -1.9
2,250,444 + -1.6
2,250,444 + -1.6
2,250,444 + -0.8
2,250,444 + -0.3
2,250,444 + +0.8
2,250,444 + +1.2
2,250,444 + +0.2
2,250,444 + +0.2
2,250,444 + +0.6
2,250,444 + -0.9
2,250,444 + -0.2
2,250,444 + -1.0
2,250,444 + +0.6
2,250,444 + -1.2
2,250,444 + +0.3
2,250,444 + -3.8
2,250,444 + -0.5
2,250,445 - -0.0
2,250,445 - -0.9
2,250,445 - -1.7
2,250,445 - -0.3
2,250,445 - -0.2
2,250,445 - +0.0
2,250,445 - +0.3
2,250,445 - -0.9
2,250,445 - +0.1
2,250,445 - -1.2
2,250,445 - -0.4
2,250,445 - -2.6
2,250,445 - -0.6
2,250,445 - -0.5
2,250,445 - +1.2
2,250,445 - -0.7
2,250,445 - -1.1
2,250,445 - -0.6
2,250,445 - +0.6
2,250,445 - +0.8
2,250,445 - -3.4
2,250,445 - -3.5
2,250,445 - +0.1
2,250,445 - +0.4
2,250,527 + LRK53_RS10065 0.13 +1.6
2,250,527 + LRK53_RS10065 0.13 -0.2
2,250,527 + LRK53_RS10065 0.13 -0.1
2,250,527 + LRK53_RS10065 0.13 -0.6
2,250,527 + LRK53_RS10065 0.13 +2.4
2,250,527 + LRK53_RS10065 0.13 -1.1
2,250,527 + LRK53_RS10065 0.13 +0.0
2,250,527 + LRK53_RS10065 0.13 -1.1
2,250,528 - LRK53_RS10065 0.13 -0.8
2,250,528 - LRK53_RS10065 0.13 +0.3
2,250,528 - LRK53_RS10065 0.13 -0.3
2,250,528 - LRK53_RS10065 0.13 -0.5
2,250,528 - LRK53_RS10065 0.13 +0.3
2,250,672 + LRK53_RS10065 0.19 +0.8
2,250,672 + LRK53_RS10065 0.19 -0.6
2,250,672 + LRK53_RS10065 0.19 -1.6
2,250,672 + LRK53_RS10065 0.19 +0.7
2,250,672 + LRK53_RS10065 0.19 -1.8
2,250,672 + LRK53_RS10065 0.19 +0.2
2,250,672 + LRK53_RS10065 0.19 -0.0
2,250,672 + LRK53_RS10065 0.19 -1.3
2,250,673 - LRK53_RS10065 0.19 -2.0
2,250,673 - LRK53_RS10065 0.19 +0.2
2,250,673 - LRK53_RS10065 0.19 +0.0
2,250,673 - LRK53_RS10065 0.19 -0.5
2,250,673 - LRK53_RS10065 0.19 +0.4
2,250,673 - LRK53_RS10065 0.19 -0.2
2,250,673 - LRK53_RS10065 0.19 +1.1
2,250,686 - LRK53_RS10065 0.20 -0.5
2,250,762 + LRK53_RS10065 0.24 +1.6
2,250,763 - LRK53_RS10065 0.24 -1.4
2,250,948 + LRK53_RS10065 0.32 +0.4
2,250,948 + LRK53_RS10065 0.32 -0.3
2,250,948 + LRK53_RS10065 0.32 -0.2
2,250,948 + LRK53_RS10065 0.32 -1.9
2,250,949 - LRK53_RS10065 0.32 +1.8
2,250,949 - LRK53_RS10065 0.32 +0.4
2,250,949 - LRK53_RS10065 0.32 -0.4
2,250,949 - LRK53_RS10065 0.32 +0.5
2,250,991 + LRK53_RS10065 0.34 +0.4
2,250,991 + LRK53_RS10065 0.34 +0.7
2,250,992 - LRK53_RS10065 0.34 +0.1
2,250,992 - LRK53_RS10065 0.34 +1.4
2,251,029 + LRK53_RS10065 0.36 +0.7
2,251,029 + LRK53_RS10065 0.36 +0.7
2,251,029 + LRK53_RS10065 0.36 -0.9
2,251,029 + LRK53_RS10065 0.36 -0.0
2,251,030 - LRK53_RS10065 0.36 +0.5
2,251,030 - LRK53_RS10065 0.36 -0.2
2,251,030 - LRK53_RS10065 0.36 -1.7
2,251,030 - LRK53_RS10065 0.36 -0.2
2,251,058 + LRK53_RS10065 0.37 -2.8
2,251,100 + LRK53_RS10065 0.39 +2.7

Or see this region's nucleotide sequence