Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10050 and LRK53_RS10055 overlap by 4 nucleotides LRK53_RS10055 and LRK53_RS10060 are separated by 22 nucleotides LRK53_RS10060 and LRK53_RS10065 are separated by 25 nucleotides
LRK53_RS10050: LRK53_RS10050 - DNA-binding domain-containing protein, at 2,248,304 to 2,249,089
_RS10050
LRK53_RS10055: LRK53_RS10055 - DoxX family protein, at 2,249,086 to 2,249,607
_RS10055
LRK53_RS10060: LRK53_RS10060 - sigma-70 family RNA polymerase sigma factor, at 2,249,630 to 2,250,232
_RS10060
LRK53_RS10065: LRK53_RS10065 - bifunctional TVP38/TMEM64 family protein/FAD-dependent oxidoreductase, at 2,250,258 to 2,252,399
_RS10065
Position (kb)
2249
2250
2251 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2248.634 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2249.116 kb on + strand at 2249.117 kb on - strand at 2249.117 kb on - strand at 2249.119 kb on + strand at 2249.120 kb on - strand at 2249.238 kb on + strand, within LRK53_RS10055 at 2249.238 kb on + strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.538 kb on + strand, within LRK53_RS10055 at 2249.539 kb on - strand, within LRK53_RS10055 at 2249.539 kb on - strand, within LRK53_RS10055 at 2249.587 kb on - strand at 2249.658 kb on + strand at 2249.659 kb on - strand at 2249.888 kb on + strand, within LRK53_RS10060 at 2249.888 kb on + strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.030 kb on - strand, within LRK53_RS10060 at 2250.030 kb on - strand, within LRK53_RS10060 at 2250.093 kb on - strand, within LRK53_RS10060 at 2250.128 kb on + strand, within LRK53_RS10060 at 2250.128 kb on + strand, within LRK53_RS10060 at 2250.128 kb on + strand, within LRK53_RS10060 at 2250.128 kb on + strand, within LRK53_RS10060 at 2250.129 kb on - strand, within LRK53_RS10060 at 2250.218 kb on + strand at 2250.218 kb on + strand at 2250.218 kb on + strand at 2250.218 kb on + strand at 2250.218 kb on + strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.219 kb on - strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.444 kb on + strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.445 kb on - strand at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.527 kb on + strand, within LRK53_RS10065 at 2250.528 kb on - strand, within LRK53_RS10065 at 2250.528 kb on - strand, within LRK53_RS10065 at 2250.528 kb on - strand, within LRK53_RS10065 at 2250.528 kb on - strand, within LRK53_RS10065 at 2250.528 kb on - strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.672 kb on + strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.673 kb on - strand, within LRK53_RS10065 at 2250.686 kb on - strand, within LRK53_RS10065 at 2250.762 kb on + strand, within LRK53_RS10065 at 2250.763 kb on - strand, within LRK53_RS10065 at 2250.948 kb on + strand, within LRK53_RS10065 at 2250.948 kb on + strand, within LRK53_RS10065 at 2250.948 kb on + strand, within LRK53_RS10065 at 2250.948 kb on + strand, within LRK53_RS10065 at 2250.949 kb on - strand, within LRK53_RS10065 at 2250.949 kb on - strand, within LRK53_RS10065 at 2250.949 kb on - strand, within LRK53_RS10065 at 2250.949 kb on - strand, within LRK53_RS10065 at 2250.991 kb on + strand, within LRK53_RS10065 at 2250.991 kb on + strand, within LRK53_RS10065 at 2250.992 kb on - strand, within LRK53_RS10065 at 2250.992 kb on - strand, within LRK53_RS10065 at 2251.029 kb on + strand, within LRK53_RS10065 at 2251.029 kb on + strand, within LRK53_RS10065 at 2251.029 kb on + strand, within LRK53_RS10065 at 2251.029 kb on + strand, within LRK53_RS10065 at 2251.030 kb on - strand, within LRK53_RS10065 at 2251.030 kb on - strand, within LRK53_RS10065 at 2251.030 kb on - strand, within LRK53_RS10065 at 2251.030 kb on - strand, within LRK53_RS10065 at 2251.058 kb on + strand, within LRK53_RS10065 at 2251.100 kb on + strand, within LRK53_RS10065
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,248,634 + LRK53_RS10050 0.42 -1.8 2,248,881 + LRK53_RS10050 0.73 +0.6 2,248,881 + LRK53_RS10050 0.73 -1.2 2,248,881 + LRK53_RS10050 0.73 -1.2 2,249,116 + -1.1 2,249,117 - -2.0 2,249,117 - -1.0 2,249,119 + -0.3 2,249,120 - -1.1 2,249,238 + LRK53_RS10055 0.29 +0.2 2,249,238 + LRK53_RS10055 0.29 -3.1 2,249,239 - LRK53_RS10055 0.29 +0.6 2,249,239 - LRK53_RS10055 0.29 +0.1 2,249,239 - LRK53_RS10055 0.29 -1.0 2,249,239 - LRK53_RS10055 0.29 -1.6 2,249,245 + LRK53_RS10055 0.30 -0.1 2,249,245 + LRK53_RS10055 0.30 -0.2 2,249,245 + LRK53_RS10055 0.30 -1.7 2,249,245 + LRK53_RS10055 0.30 -1.6 2,249,245 + LRK53_RS10055 0.30 -1.5 2,249,246 - LRK53_RS10055 0.31 -1.2 2,249,246 - LRK53_RS10055 0.31 -1.2 2,249,246 - LRK53_RS10055 0.31 -0.4 2,249,246 - LRK53_RS10055 0.31 -1.3 2,249,246 - LRK53_RS10055 0.31 -0.8 2,249,246 - LRK53_RS10055 0.31 +1.6 2,249,246 - LRK53_RS10055 0.31 -0.5 2,249,246 - LRK53_RS10055 0.31 +0.8 2,249,246 - LRK53_RS10055 0.31 +0.9 2,249,246 - LRK53_RS10055 0.31 -0.1 2,249,246 - LRK53_RS10055 0.31 -1.0 2,249,264 - LRK53_RS10055 0.34 +0.0 2,249,264 - LRK53_RS10055 0.34 -0.6 2,249,264 - LRK53_RS10055 0.34 -0.2 2,249,264 - LRK53_RS10055 0.34 +1.6 2,249,270 + LRK53_RS10055 0.35 +1.2 2,249,270 + LRK53_RS10055 0.35 +0.5 2,249,270 + LRK53_RS10055 0.35 +0.3 2,249,270 + LRK53_RS10055 0.35 +0.2 2,249,270 + LRK53_RS10055 0.35 +0.6 2,249,270 + LRK53_RS10055 0.35 -0.1 2,249,270 + LRK53_RS10055 0.35 -0.6 2,249,271 - LRK53_RS10055 0.35 -0.4 2,249,271 - LRK53_RS10055 0.35 +0.0 2,249,271 - LRK53_RS10055 0.35 -0.6 2,249,271 - LRK53_RS10055 0.35 -1.3 2,249,271 - LRK53_RS10055 0.35 -1.2 2,249,386 + LRK53_RS10055 0.57 -0.8 2,249,386 + LRK53_RS10055 0.57 +0.6 2,249,386 + LRK53_RS10055 0.57 +0.0 2,249,386 + LRK53_RS10055 0.57 -0.4 2,249,386 + LRK53_RS10055 0.57 -0.4 2,249,386 + LRK53_RS10055 0.57 -0.8 2,249,386 + LRK53_RS10055 0.57 -0.9 2,249,386 + LRK53_RS10055 0.57 +2.1 2,249,386 + LRK53_RS10055 0.57 -2.0 2,249,386 + LRK53_RS10055 0.57 -0.5 2,249,386 + LRK53_RS10055 0.57 +0.0 2,249,387 - LRK53_RS10055 0.58 -1.3 2,249,387 - LRK53_RS10055 0.58 -2.8 2,249,387 - LRK53_RS10055 0.58 +0.0 2,249,387 - LRK53_RS10055 0.58 +0.5 2,249,387 - LRK53_RS10055 0.58 -1.4 2,249,387 - LRK53_RS10055 0.58 -0.8 2,249,387 - LRK53_RS10055 0.58 -1.2 2,249,387 - LRK53_RS10055 0.58 +2.0 2,249,387 - LRK53_RS10055 0.58 +0.2 2,249,387 - LRK53_RS10055 0.58 -0.4 2,249,538 + LRK53_RS10055 0.87 +0.4 2,249,539 - LRK53_RS10055 0.87 +1.0 2,249,539 - LRK53_RS10055 0.87 +0.2 2,249,587 - +1.0 2,249,658 + +2.1 2,249,659 - -1.0 2,249,888 + LRK53_RS10060 0.43 -0.6 2,249,888 + LRK53_RS10060 0.43 +2.0 2,249,889 - LRK53_RS10060 0.43 -2.6 2,249,889 - LRK53_RS10060 0.43 -0.5 2,249,889 - LRK53_RS10060 0.43 +0.4 2,250,029 + LRK53_RS10060 0.66 +0.7 2,250,029 + LRK53_RS10060 0.66 +0.2 2,250,029 + LRK53_RS10060 0.66 -0.0 2,250,029 + LRK53_RS10060 0.66 +0.9 2,250,029 + LRK53_RS10060 0.66 -0.2 2,250,030 - LRK53_RS10060 0.66 -1.1 2,250,030 - LRK53_RS10060 0.66 +0.1 2,250,093 - LRK53_RS10060 0.77 +0.6 2,250,128 + LRK53_RS10060 0.83 -0.8 2,250,128 + LRK53_RS10060 0.83 -1.9 2,250,128 + LRK53_RS10060 0.83 +1.0 2,250,128 + LRK53_RS10060 0.83 +0.6 2,250,129 - LRK53_RS10060 0.83 -1.5 2,250,218 + -0.4 2,250,218 + -0.3 2,250,218 + +0.1 2,250,218 + +1.0 2,250,218 + -1.3 2,250,219 - +0.7 2,250,219 - +0.0 2,250,219 - +1.6 2,250,219 - +0.1 2,250,219 - -0.2 2,250,219 - -0.5 2,250,219 - -1.0 2,250,219 - -1.3 2,250,219 - -0.8 2,250,444 + -1.1 2,250,444 + -0.9 2,250,444 + -0.4 2,250,444 + -0.7 2,250,444 + +1.4 2,250,444 + -1.0 2,250,444 + -1.6 2,250,444 + +2.1 2,250,444 + -1.6 2,250,444 + -0.6 2,250,444 + -0.5 2,250,444 + +0.0 2,250,444 + -1.2 2,250,444 + -0.4 2,250,444 + -0.2 2,250,444 + +0.5 2,250,444 + -2.1 2,250,444 + +0.8 2,250,444 + +2.4 2,250,444 + -0.8 2,250,444 + -2.3 2,250,444 + -1.9 2,250,444 + -1.6 2,250,444 + -1.6 2,250,444 + -0.8 2,250,444 + -0.3 2,250,444 + +0.8 2,250,444 + +1.2 2,250,444 + +0.2 2,250,444 + +0.2 2,250,444 + +0.6 2,250,444 + -0.9 2,250,444 + -0.2 2,250,444 + -1.0 2,250,444 + +0.6 2,250,444 + -1.2 2,250,444 + +0.3 2,250,444 + -3.8 2,250,444 + -0.5 2,250,445 - -0.0 2,250,445 - -0.9 2,250,445 - -1.7 2,250,445 - -0.3 2,250,445 - -0.2 2,250,445 - +0.0 2,250,445 - +0.3 2,250,445 - -0.9 2,250,445 - +0.1 2,250,445 - -1.2 2,250,445 - -0.4 2,250,445 - -2.6 2,250,445 - -0.6 2,250,445 - -0.5 2,250,445 - +1.2 2,250,445 - -0.7 2,250,445 - -1.1 2,250,445 - -0.6 2,250,445 - +0.6 2,250,445 - +0.8 2,250,445 - -3.4 2,250,445 - -3.5 2,250,445 - +0.1 2,250,445 - +0.4 2,250,527 + LRK53_RS10065 0.13 +1.6 2,250,527 + LRK53_RS10065 0.13 -0.2 2,250,527 + LRK53_RS10065 0.13 -0.1 2,250,527 + LRK53_RS10065 0.13 -0.6 2,250,527 + LRK53_RS10065 0.13 +2.4 2,250,527 + LRK53_RS10065 0.13 -1.1 2,250,527 + LRK53_RS10065 0.13 +0.0 2,250,527 + LRK53_RS10065 0.13 -1.1 2,250,528 - LRK53_RS10065 0.13 -0.8 2,250,528 - LRK53_RS10065 0.13 +0.3 2,250,528 - LRK53_RS10065 0.13 -0.3 2,250,528 - LRK53_RS10065 0.13 -0.5 2,250,528 - LRK53_RS10065 0.13 +0.3 2,250,672 + LRK53_RS10065 0.19 +0.8 2,250,672 + LRK53_RS10065 0.19 -0.6 2,250,672 + LRK53_RS10065 0.19 -1.6 2,250,672 + LRK53_RS10065 0.19 +0.7 2,250,672 + LRK53_RS10065 0.19 -1.8 2,250,672 + LRK53_RS10065 0.19 +0.2 2,250,672 + LRK53_RS10065 0.19 -0.0 2,250,672 + LRK53_RS10065 0.19 -1.3 2,250,673 - LRK53_RS10065 0.19 -2.0 2,250,673 - LRK53_RS10065 0.19 +0.2 2,250,673 - LRK53_RS10065 0.19 +0.0 2,250,673 - LRK53_RS10065 0.19 -0.5 2,250,673 - LRK53_RS10065 0.19 +0.4 2,250,673 - LRK53_RS10065 0.19 -0.2 2,250,673 - LRK53_RS10065 0.19 +1.1 2,250,686 - LRK53_RS10065 0.20 -0.5 2,250,762 + LRK53_RS10065 0.24 +1.6 2,250,763 - LRK53_RS10065 0.24 -1.4 2,250,948 + LRK53_RS10065 0.32 +0.4 2,250,948 + LRK53_RS10065 0.32 -0.3 2,250,948 + LRK53_RS10065 0.32 -0.2 2,250,948 + LRK53_RS10065 0.32 -1.9 2,250,949 - LRK53_RS10065 0.32 +1.8 2,250,949 - LRK53_RS10065 0.32 +0.4 2,250,949 - LRK53_RS10065 0.32 -0.4 2,250,949 - LRK53_RS10065 0.32 +0.5 2,250,991 + LRK53_RS10065 0.34 +0.4 2,250,991 + LRK53_RS10065 0.34 +0.7 2,250,992 - LRK53_RS10065 0.34 +0.1 2,250,992 - LRK53_RS10065 0.34 +1.4 2,251,029 + LRK53_RS10065 0.36 +0.7 2,251,029 + LRK53_RS10065 0.36 +0.7 2,251,029 + LRK53_RS10065 0.36 -0.9 2,251,029 + LRK53_RS10065 0.36 -0.0 2,251,030 - LRK53_RS10065 0.36 +0.5 2,251,030 - LRK53_RS10065 0.36 -0.2 2,251,030 - LRK53_RS10065 0.36 -1.7 2,251,030 - LRK53_RS10065 0.36 -0.2 2,251,058 + LRK53_RS10065 0.37 -2.8 2,251,100 + LRK53_RS10065 0.39 +2.7
Or see this region's nucleotide sequence