Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS10050

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS10040 and LRK53_RS10045 are separated by 9 nucleotidesLRK53_RS10045 and LRK53_RS10050 overlap by 26 nucleotidesLRK53_RS10050 and LRK53_RS10055 overlap by 4 nucleotidesLRK53_RS10055 and LRK53_RS10060 are separated by 22 nucleotides LRK53_RS10040: LRK53_RS10040 - DUF2282 domain-containing protein, at 2,247,157 to 2,247,453 _RS10040 LRK53_RS10045: LRK53_RS10045 - DUF692 domain-containing protein, at 2,247,463 to 2,248,329 _RS10045 LRK53_RS10050: LRK53_RS10050 - DNA-binding domain-containing protein, at 2,248,304 to 2,249,089 _RS10050 LRK53_RS10055: LRK53_RS10055 - DoxX family protein, at 2,249,086 to 2,249,607 _RS10055 LRK53_RS10060: LRK53_RS10060 - sigma-70 family RNA polymerase sigma factor, at 2,249,630 to 2,250,232 _RS10060 Position (kb) 2248 2249 2250Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2247.376 kb on - strand, within LRK53_RS10040at 2247.585 kb on + strand, within LRK53_RS10045at 2247.585 kb on + strand, within LRK53_RS10045at 2247.585 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.595 kb on + strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.596 kb on - strand, within LRK53_RS10045at 2247.636 kb on + strand, within LRK53_RS10045at 2247.649 kb on + strand, within LRK53_RS10045at 2247.650 kb on - strand, within LRK53_RS10045at 2247.815 kb on + strand, within LRK53_RS10045at 2247.826 kb on + strand, within LRK53_RS10045at 2247.826 kb on + strand, within LRK53_RS10045at 2247.826 kb on + strand, within LRK53_RS10045at 2247.827 kb on - strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.828 kb on + strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.829 kb on - strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.919 kb on + strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.920 kb on - strand, within LRK53_RS10045at 2247.974 kb on + strand, within LRK53_RS10045at 2247.975 kb on - strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.018 kb on + strand, within LRK53_RS10045at 2248.019 kb on - strand, within LRK53_RS10045at 2248.019 kb on - strand, within LRK53_RS10045at 2248.057 kb on + strand, within LRK53_RS10045at 2248.057 kb on + strand, within LRK53_RS10045at 2248.057 kb on + strand, within LRK53_RS10045at 2248.058 kb on - strand, within LRK53_RS10045at 2248.178 kb on + strand, within LRK53_RS10045at 2248.178 kb on + strand, within LRK53_RS10045at 2248.178 kb on + strand, within LRK53_RS10045at 2248.178 kb on + strand, within LRK53_RS10045at 2248.179 kb on - strand, within LRK53_RS10045at 2248.179 kb on - strand, within LRK53_RS10045at 2248.179 kb on - strand, within LRK53_RS10045at 2248.179 kb on - strand, within LRK53_RS10045at 2248.179 kb on - strand, within LRK53_RS10045at 2248.190 kb on - strand, within LRK53_RS10045at 2248.430 kb on + strand, within LRK53_RS10050at 2248.430 kb on + strand, within LRK53_RS10050at 2248.431 kb on - strand, within LRK53_RS10050at 2248.431 kb on - strand, within LRK53_RS10050at 2248.536 kb on - strand, within LRK53_RS10050at 2248.634 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2248.881 kb on + strand, within LRK53_RS10050at 2249.116 kb on + strandat 2249.117 kb on - strandat 2249.117 kb on - strandat 2249.119 kb on + strandat 2249.120 kb on - strandat 2249.238 kb on + strand, within LRK53_RS10055at 2249.238 kb on + strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.239 kb on - strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.245 kb on + strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.246 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.264 kb on - strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.270 kb on + strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.271 kb on - strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.386 kb on + strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.387 kb on - strand, within LRK53_RS10055at 2249.538 kb on + strand, within LRK53_RS10055at 2249.539 kb on - strand, within LRK53_RS10055at 2249.539 kb on - strand, within LRK53_RS10055at 2249.587 kb on - strandat 2249.658 kb on + strandat 2249.659 kb on - strandat 2249.888 kb on + strand, within LRK53_RS10060at 2249.888 kb on + strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2249.889 kb on - strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.029 kb on + strand, within LRK53_RS10060at 2250.030 kb on - strand, within LRK53_RS10060at 2250.030 kb on - strand, within LRK53_RS10060

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,247,376 - LRK53_RS10040 0.74 -0.4
2,247,585 + LRK53_RS10045 0.14 +0.0
2,247,585 + LRK53_RS10045 0.14 +0.1
2,247,585 + LRK53_RS10045 0.14 +2.0
2,247,595 + LRK53_RS10045 0.15 -0.1
2,247,595 + LRK53_RS10045 0.15 -0.3
2,247,595 + LRK53_RS10045 0.15 -0.7
2,247,595 + LRK53_RS10045 0.15 -0.2
2,247,595 + LRK53_RS10045 0.15 -1.1
2,247,595 + LRK53_RS10045 0.15 -2.3
2,247,595 + LRK53_RS10045 0.15 -1.0
2,247,595 + LRK53_RS10045 0.15 -2.0
2,247,595 + LRK53_RS10045 0.15 -0.4
2,247,596 - LRK53_RS10045 0.15 -1.1
2,247,596 - LRK53_RS10045 0.15 -3.2
2,247,596 - LRK53_RS10045 0.15 +0.4
2,247,596 - LRK53_RS10045 0.15 +0.5
2,247,596 - LRK53_RS10045 0.15 -0.4
2,247,596 - LRK53_RS10045 0.15 -2.4
2,247,596 - LRK53_RS10045 0.15 -0.3
2,247,596 - LRK53_RS10045 0.15 -1.0
2,247,636 + LRK53_RS10045 0.20 -0.2
2,247,649 + LRK53_RS10045 0.21 -2.0
2,247,650 - LRK53_RS10045 0.22 -0.5
2,247,815 + LRK53_RS10045 0.41 +0.4
2,247,826 + LRK53_RS10045 0.42 -0.1
2,247,826 + LRK53_RS10045 0.42 -0.1
2,247,826 + LRK53_RS10045 0.42 -0.1
2,247,827 - LRK53_RS10045 0.42 -1.0
2,247,828 + LRK53_RS10045 0.42 -0.8
2,247,828 + LRK53_RS10045 0.42 -2.5
2,247,828 + LRK53_RS10045 0.42 -0.4
2,247,828 + LRK53_RS10045 0.42 -0.3
2,247,828 + LRK53_RS10045 0.42 +0.4
2,247,828 + LRK53_RS10045 0.42 +2.6
2,247,829 - LRK53_RS10045 0.42 +0.8
2,247,829 - LRK53_RS10045 0.42 -0.8
2,247,829 - LRK53_RS10045 0.42 -0.4
2,247,829 - LRK53_RS10045 0.42 -0.5
2,247,829 - LRK53_RS10045 0.42 -0.4
2,247,829 - LRK53_RS10045 0.42 -1.0
2,247,829 - LRK53_RS10045 0.42 +0.7
2,247,829 - LRK53_RS10045 0.42 -0.6
2,247,919 + LRK53_RS10045 0.53 -2.8
2,247,919 + LRK53_RS10045 0.53 -1.3
2,247,919 + LRK53_RS10045 0.53 -0.4
2,247,919 + LRK53_RS10045 0.53 +1.0
2,247,919 + LRK53_RS10045 0.53 -0.4
2,247,919 + LRK53_RS10045 0.53 +0.6
2,247,920 - LRK53_RS10045 0.53 -0.6
2,247,920 - LRK53_RS10045 0.53 -0.4
2,247,920 - LRK53_RS10045 0.53 -0.2
2,247,920 - LRK53_RS10045 0.53 +0.6
2,247,920 - LRK53_RS10045 0.53 -1.1
2,247,920 - LRK53_RS10045 0.53 -0.9
2,247,974 + LRK53_RS10045 0.59 -0.9
2,247,975 - LRK53_RS10045 0.59 -1.0
2,248,018 + LRK53_RS10045 0.64 -0.4
2,248,018 + LRK53_RS10045 0.64 -1.3
2,248,018 + LRK53_RS10045 0.64 -1.0
2,248,018 + LRK53_RS10045 0.64 -0.9
2,248,018 + LRK53_RS10045 0.64 +0.6
2,248,018 + LRK53_RS10045 0.64 -0.2
2,248,019 - LRK53_RS10045 0.64 -1.4
2,248,019 - LRK53_RS10045 0.64 -0.6
2,248,057 + LRK53_RS10045 0.69 -1.3
2,248,057 + LRK53_RS10045 0.69 +1.1
2,248,057 + LRK53_RS10045 0.69 +0.4
2,248,058 - LRK53_RS10045 0.69 -0.2
2,248,178 + LRK53_RS10045 0.82 +0.1
2,248,178 + LRK53_RS10045 0.82 +0.0
2,248,178 + LRK53_RS10045 0.82 -0.0
2,248,178 + LRK53_RS10045 0.82 +1.5
2,248,179 - LRK53_RS10045 0.83 +0.4
2,248,179 - LRK53_RS10045 0.83 -1.8
2,248,179 - LRK53_RS10045 0.83 -0.6
2,248,179 - LRK53_RS10045 0.83 -1.0
2,248,179 - LRK53_RS10045 0.83 +0.2
2,248,190 - LRK53_RS10045 0.84 +0.3
2,248,430 + LRK53_RS10050 0.16 +0.3
2,248,430 + LRK53_RS10050 0.16 -0.2
2,248,431 - LRK53_RS10050 0.16 -2.7
2,248,431 - LRK53_RS10050 0.16 -1.0
2,248,536 - LRK53_RS10050 0.30 +0.2
2,248,634 + LRK53_RS10050 0.42 -1.8
2,248,881 + LRK53_RS10050 0.73 +0.6
2,248,881 + LRK53_RS10050 0.73 -1.2
2,248,881 + LRK53_RS10050 0.73 -1.2
2,249,116 + -1.1
2,249,117 - -2.0
2,249,117 - -1.0
2,249,119 + -0.3
2,249,120 - -1.1
2,249,238 + LRK53_RS10055 0.29 +0.2
2,249,238 + LRK53_RS10055 0.29 -3.1
2,249,239 - LRK53_RS10055 0.29 +0.6
2,249,239 - LRK53_RS10055 0.29 +0.1
2,249,239 - LRK53_RS10055 0.29 -1.0
2,249,239 - LRK53_RS10055 0.29 -1.6
2,249,245 + LRK53_RS10055 0.30 -0.1
2,249,245 + LRK53_RS10055 0.30 -0.2
2,249,245 + LRK53_RS10055 0.30 -1.7
2,249,245 + LRK53_RS10055 0.30 -1.6
2,249,245 + LRK53_RS10055 0.30 -1.5
2,249,246 - LRK53_RS10055 0.31 -1.2
2,249,246 - LRK53_RS10055 0.31 -1.2
2,249,246 - LRK53_RS10055 0.31 -0.4
2,249,246 - LRK53_RS10055 0.31 -1.3
2,249,246 - LRK53_RS10055 0.31 -0.8
2,249,246 - LRK53_RS10055 0.31 +1.6
2,249,246 - LRK53_RS10055 0.31 -0.5
2,249,246 - LRK53_RS10055 0.31 +0.8
2,249,246 - LRK53_RS10055 0.31 +0.9
2,249,246 - LRK53_RS10055 0.31 -0.1
2,249,246 - LRK53_RS10055 0.31 -1.0
2,249,264 - LRK53_RS10055 0.34 +0.0
2,249,264 - LRK53_RS10055 0.34 -0.6
2,249,264 - LRK53_RS10055 0.34 -0.2
2,249,264 - LRK53_RS10055 0.34 +1.6
2,249,270 + LRK53_RS10055 0.35 +1.2
2,249,270 + LRK53_RS10055 0.35 +0.5
2,249,270 + LRK53_RS10055 0.35 +0.3
2,249,270 + LRK53_RS10055 0.35 +0.2
2,249,270 + LRK53_RS10055 0.35 +0.6
2,249,270 + LRK53_RS10055 0.35 -0.1
2,249,270 + LRK53_RS10055 0.35 -0.6
2,249,271 - LRK53_RS10055 0.35 -0.4
2,249,271 - LRK53_RS10055 0.35 +0.0
2,249,271 - LRK53_RS10055 0.35 -0.6
2,249,271 - LRK53_RS10055 0.35 -1.3
2,249,271 - LRK53_RS10055 0.35 -1.2
2,249,386 + LRK53_RS10055 0.57 -0.8
2,249,386 + LRK53_RS10055 0.57 +0.6
2,249,386 + LRK53_RS10055 0.57 +0.0
2,249,386 + LRK53_RS10055 0.57 -0.4
2,249,386 + LRK53_RS10055 0.57 -0.4
2,249,386 + LRK53_RS10055 0.57 -0.8
2,249,386 + LRK53_RS10055 0.57 -0.9
2,249,386 + LRK53_RS10055 0.57 +2.1
2,249,386 + LRK53_RS10055 0.57 -2.0
2,249,386 + LRK53_RS10055 0.57 -0.5
2,249,386 + LRK53_RS10055 0.57 +0.0
2,249,387 - LRK53_RS10055 0.58 -1.3
2,249,387 - LRK53_RS10055 0.58 -2.8
2,249,387 - LRK53_RS10055 0.58 +0.0
2,249,387 - LRK53_RS10055 0.58 +0.5
2,249,387 - LRK53_RS10055 0.58 -1.4
2,249,387 - LRK53_RS10055 0.58 -0.8
2,249,387 - LRK53_RS10055 0.58 -1.2
2,249,387 - LRK53_RS10055 0.58 +2.0
2,249,387 - LRK53_RS10055 0.58 +0.2
2,249,387 - LRK53_RS10055 0.58 -0.4
2,249,538 + LRK53_RS10055 0.87 +0.4
2,249,539 - LRK53_RS10055 0.87 +1.0
2,249,539 - LRK53_RS10055 0.87 +0.2
2,249,587 - +1.0
2,249,658 + +2.1
2,249,659 - -1.0
2,249,888 + LRK53_RS10060 0.43 -0.6
2,249,888 + LRK53_RS10060 0.43 +2.0
2,249,889 - LRK53_RS10060 0.43 -2.6
2,249,889 - LRK53_RS10060 0.43 -0.5
2,249,889 - LRK53_RS10060 0.43 +0.4
2,250,029 + LRK53_RS10060 0.66 +0.7
2,250,029 + LRK53_RS10060 0.66 +0.2
2,250,029 + LRK53_RS10060 0.66 -0.0
2,250,029 + LRK53_RS10060 0.66 +0.9
2,250,029 + LRK53_RS10060 0.66 -0.2
2,250,030 - LRK53_RS10060 0.66 -1.1
2,250,030 - LRK53_RS10060 0.66 +0.1

Or see this region's nucleotide sequence