Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS10040 and LRK53_RS10045 are separated by 9 nucleotides LRK53_RS10045 and LRK53_RS10050 overlap by 26 nucleotides LRK53_RS10050 and LRK53_RS10055 overlap by 4 nucleotides LRK53_RS10055 and LRK53_RS10060 are separated by 22 nucleotides
LRK53_RS10040: LRK53_RS10040 - DUF2282 domain-containing protein, at 2,247,157 to 2,247,453
_RS10040
LRK53_RS10045: LRK53_RS10045 - DUF692 domain-containing protein, at 2,247,463 to 2,248,329
_RS10045
LRK53_RS10050: LRK53_RS10050 - DNA-binding domain-containing protein, at 2,248,304 to 2,249,089
_RS10050
LRK53_RS10055: LRK53_RS10055 - DoxX family protein, at 2,249,086 to 2,249,607
_RS10055
LRK53_RS10060: LRK53_RS10060 - sigma-70 family RNA polymerase sigma factor, at 2,249,630 to 2,250,232
_RS10060
Position (kb)
2248
2249
2250 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2247.376 kb on - strand, within LRK53_RS10040 at 2247.585 kb on + strand, within LRK53_RS10045 at 2247.585 kb on + strand, within LRK53_RS10045 at 2247.585 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.595 kb on + strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.596 kb on - strand, within LRK53_RS10045 at 2247.636 kb on + strand, within LRK53_RS10045 at 2247.649 kb on + strand, within LRK53_RS10045 at 2247.650 kb on - strand, within LRK53_RS10045 at 2247.815 kb on + strand, within LRK53_RS10045 at 2247.826 kb on + strand, within LRK53_RS10045 at 2247.826 kb on + strand, within LRK53_RS10045 at 2247.826 kb on + strand, within LRK53_RS10045 at 2247.827 kb on - strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.828 kb on + strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.829 kb on - strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.919 kb on + strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.920 kb on - strand, within LRK53_RS10045 at 2247.974 kb on + strand, within LRK53_RS10045 at 2247.975 kb on - strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.018 kb on + strand, within LRK53_RS10045 at 2248.019 kb on - strand, within LRK53_RS10045 at 2248.019 kb on - strand, within LRK53_RS10045 at 2248.057 kb on + strand, within LRK53_RS10045 at 2248.057 kb on + strand, within LRK53_RS10045 at 2248.057 kb on + strand, within LRK53_RS10045 at 2248.058 kb on - strand, within LRK53_RS10045 at 2248.178 kb on + strand, within LRK53_RS10045 at 2248.178 kb on + strand, within LRK53_RS10045 at 2248.178 kb on + strand, within LRK53_RS10045 at 2248.178 kb on + strand, within LRK53_RS10045 at 2248.179 kb on - strand, within LRK53_RS10045 at 2248.179 kb on - strand, within LRK53_RS10045 at 2248.179 kb on - strand, within LRK53_RS10045 at 2248.179 kb on - strand, within LRK53_RS10045 at 2248.179 kb on - strand, within LRK53_RS10045 at 2248.190 kb on - strand, within LRK53_RS10045 at 2248.430 kb on + strand, within LRK53_RS10050 at 2248.430 kb on + strand, within LRK53_RS10050 at 2248.431 kb on - strand, within LRK53_RS10050 at 2248.431 kb on - strand, within LRK53_RS10050 at 2248.536 kb on - strand, within LRK53_RS10050 at 2248.634 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2248.881 kb on + strand, within LRK53_RS10050 at 2249.116 kb on + strand at 2249.117 kb on - strand at 2249.117 kb on - strand at 2249.119 kb on + strand at 2249.120 kb on - strand at 2249.238 kb on + strand, within LRK53_RS10055 at 2249.238 kb on + strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.239 kb on - strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.245 kb on + strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.246 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.264 kb on - strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.270 kb on + strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.271 kb on - strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.386 kb on + strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.387 kb on - strand, within LRK53_RS10055 at 2249.538 kb on + strand, within LRK53_RS10055 at 2249.539 kb on - strand, within LRK53_RS10055 at 2249.539 kb on - strand, within LRK53_RS10055 at 2249.587 kb on - strand at 2249.658 kb on + strand at 2249.659 kb on - strand at 2249.888 kb on + strand, within LRK53_RS10060 at 2249.888 kb on + strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2249.889 kb on - strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.029 kb on + strand, within LRK53_RS10060 at 2250.030 kb on - strand, within LRK53_RS10060 at 2250.030 kb on - strand, within LRK53_RS10060
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,247,376 - LRK53_RS10040 0.74 -0.4 2,247,585 + LRK53_RS10045 0.14 +0.0 2,247,585 + LRK53_RS10045 0.14 +0.1 2,247,585 + LRK53_RS10045 0.14 +2.0 2,247,595 + LRK53_RS10045 0.15 -0.1 2,247,595 + LRK53_RS10045 0.15 -0.3 2,247,595 + LRK53_RS10045 0.15 -0.7 2,247,595 + LRK53_RS10045 0.15 -0.2 2,247,595 + LRK53_RS10045 0.15 -1.1 2,247,595 + LRK53_RS10045 0.15 -2.3 2,247,595 + LRK53_RS10045 0.15 -1.0 2,247,595 + LRK53_RS10045 0.15 -2.0 2,247,595 + LRK53_RS10045 0.15 -0.4 2,247,596 - LRK53_RS10045 0.15 -1.1 2,247,596 - LRK53_RS10045 0.15 -3.2 2,247,596 - LRK53_RS10045 0.15 +0.4 2,247,596 - LRK53_RS10045 0.15 +0.5 2,247,596 - LRK53_RS10045 0.15 -0.4 2,247,596 - LRK53_RS10045 0.15 -2.4 2,247,596 - LRK53_RS10045 0.15 -0.3 2,247,596 - LRK53_RS10045 0.15 -1.0 2,247,636 + LRK53_RS10045 0.20 -0.2 2,247,649 + LRK53_RS10045 0.21 -2.0 2,247,650 - LRK53_RS10045 0.22 -0.5 2,247,815 + LRK53_RS10045 0.41 +0.4 2,247,826 + LRK53_RS10045 0.42 -0.1 2,247,826 + LRK53_RS10045 0.42 -0.1 2,247,826 + LRK53_RS10045 0.42 -0.1 2,247,827 - LRK53_RS10045 0.42 -1.0 2,247,828 + LRK53_RS10045 0.42 -0.8 2,247,828 + LRK53_RS10045 0.42 -2.5 2,247,828 + LRK53_RS10045 0.42 -0.4 2,247,828 + LRK53_RS10045 0.42 -0.3 2,247,828 + LRK53_RS10045 0.42 +0.4 2,247,828 + LRK53_RS10045 0.42 +2.6 2,247,829 - LRK53_RS10045 0.42 +0.8 2,247,829 - LRK53_RS10045 0.42 -0.8 2,247,829 - LRK53_RS10045 0.42 -0.4 2,247,829 - LRK53_RS10045 0.42 -0.5 2,247,829 - LRK53_RS10045 0.42 -0.4 2,247,829 - LRK53_RS10045 0.42 -1.0 2,247,829 - LRK53_RS10045 0.42 +0.7 2,247,829 - LRK53_RS10045 0.42 -0.6 2,247,919 + LRK53_RS10045 0.53 -2.8 2,247,919 + LRK53_RS10045 0.53 -1.3 2,247,919 + LRK53_RS10045 0.53 -0.4 2,247,919 + LRK53_RS10045 0.53 +1.0 2,247,919 + LRK53_RS10045 0.53 -0.4 2,247,919 + LRK53_RS10045 0.53 +0.6 2,247,920 - LRK53_RS10045 0.53 -0.6 2,247,920 - LRK53_RS10045 0.53 -0.4 2,247,920 - LRK53_RS10045 0.53 -0.2 2,247,920 - LRK53_RS10045 0.53 +0.6 2,247,920 - LRK53_RS10045 0.53 -1.1 2,247,920 - LRK53_RS10045 0.53 -0.9 2,247,974 + LRK53_RS10045 0.59 -0.9 2,247,975 - LRK53_RS10045 0.59 -1.0 2,248,018 + LRK53_RS10045 0.64 -0.4 2,248,018 + LRK53_RS10045 0.64 -1.3 2,248,018 + LRK53_RS10045 0.64 -1.0 2,248,018 + LRK53_RS10045 0.64 -0.9 2,248,018 + LRK53_RS10045 0.64 +0.6 2,248,018 + LRK53_RS10045 0.64 -0.2 2,248,019 - LRK53_RS10045 0.64 -1.4 2,248,019 - LRK53_RS10045 0.64 -0.6 2,248,057 + LRK53_RS10045 0.69 -1.3 2,248,057 + LRK53_RS10045 0.69 +1.1 2,248,057 + LRK53_RS10045 0.69 +0.4 2,248,058 - LRK53_RS10045 0.69 -0.2 2,248,178 + LRK53_RS10045 0.82 +0.1 2,248,178 + LRK53_RS10045 0.82 +0.0 2,248,178 + LRK53_RS10045 0.82 -0.0 2,248,178 + LRK53_RS10045 0.82 +1.5 2,248,179 - LRK53_RS10045 0.83 +0.4 2,248,179 - LRK53_RS10045 0.83 -1.8 2,248,179 - LRK53_RS10045 0.83 -0.6 2,248,179 - LRK53_RS10045 0.83 -1.0 2,248,179 - LRK53_RS10045 0.83 +0.2 2,248,190 - LRK53_RS10045 0.84 +0.3 2,248,430 + LRK53_RS10050 0.16 +0.3 2,248,430 + LRK53_RS10050 0.16 -0.2 2,248,431 - LRK53_RS10050 0.16 -2.7 2,248,431 - LRK53_RS10050 0.16 -1.0 2,248,536 - LRK53_RS10050 0.30 +0.2 2,248,634 + LRK53_RS10050 0.42 -1.8 2,248,881 + LRK53_RS10050 0.73 +0.6 2,248,881 + LRK53_RS10050 0.73 -1.2 2,248,881 + LRK53_RS10050 0.73 -1.2 2,249,116 + -1.1 2,249,117 - -2.0 2,249,117 - -1.0 2,249,119 + -0.3 2,249,120 - -1.1 2,249,238 + LRK53_RS10055 0.29 +0.2 2,249,238 + LRK53_RS10055 0.29 -3.1 2,249,239 - LRK53_RS10055 0.29 +0.6 2,249,239 - LRK53_RS10055 0.29 +0.1 2,249,239 - LRK53_RS10055 0.29 -1.0 2,249,239 - LRK53_RS10055 0.29 -1.6 2,249,245 + LRK53_RS10055 0.30 -0.1 2,249,245 + LRK53_RS10055 0.30 -0.2 2,249,245 + LRK53_RS10055 0.30 -1.7 2,249,245 + LRK53_RS10055 0.30 -1.6 2,249,245 + LRK53_RS10055 0.30 -1.5 2,249,246 - LRK53_RS10055 0.31 -1.2 2,249,246 - LRK53_RS10055 0.31 -1.2 2,249,246 - LRK53_RS10055 0.31 -0.4 2,249,246 - LRK53_RS10055 0.31 -1.3 2,249,246 - LRK53_RS10055 0.31 -0.8 2,249,246 - LRK53_RS10055 0.31 +1.6 2,249,246 - LRK53_RS10055 0.31 -0.5 2,249,246 - LRK53_RS10055 0.31 +0.8 2,249,246 - LRK53_RS10055 0.31 +0.9 2,249,246 - LRK53_RS10055 0.31 -0.1 2,249,246 - LRK53_RS10055 0.31 -1.0 2,249,264 - LRK53_RS10055 0.34 +0.0 2,249,264 - LRK53_RS10055 0.34 -0.6 2,249,264 - LRK53_RS10055 0.34 -0.2 2,249,264 - LRK53_RS10055 0.34 +1.6 2,249,270 + LRK53_RS10055 0.35 +1.2 2,249,270 + LRK53_RS10055 0.35 +0.5 2,249,270 + LRK53_RS10055 0.35 +0.3 2,249,270 + LRK53_RS10055 0.35 +0.2 2,249,270 + LRK53_RS10055 0.35 +0.6 2,249,270 + LRK53_RS10055 0.35 -0.1 2,249,270 + LRK53_RS10055 0.35 -0.6 2,249,271 - LRK53_RS10055 0.35 -0.4 2,249,271 - LRK53_RS10055 0.35 +0.0 2,249,271 - LRK53_RS10055 0.35 -0.6 2,249,271 - LRK53_RS10055 0.35 -1.3 2,249,271 - LRK53_RS10055 0.35 -1.2 2,249,386 + LRK53_RS10055 0.57 -0.8 2,249,386 + LRK53_RS10055 0.57 +0.6 2,249,386 + LRK53_RS10055 0.57 +0.0 2,249,386 + LRK53_RS10055 0.57 -0.4 2,249,386 + LRK53_RS10055 0.57 -0.4 2,249,386 + LRK53_RS10055 0.57 -0.8 2,249,386 + LRK53_RS10055 0.57 -0.9 2,249,386 + LRK53_RS10055 0.57 +2.1 2,249,386 + LRK53_RS10055 0.57 -2.0 2,249,386 + LRK53_RS10055 0.57 -0.5 2,249,386 + LRK53_RS10055 0.57 +0.0 2,249,387 - LRK53_RS10055 0.58 -1.3 2,249,387 - LRK53_RS10055 0.58 -2.8 2,249,387 - LRK53_RS10055 0.58 +0.0 2,249,387 - LRK53_RS10055 0.58 +0.5 2,249,387 - LRK53_RS10055 0.58 -1.4 2,249,387 - LRK53_RS10055 0.58 -0.8 2,249,387 - LRK53_RS10055 0.58 -1.2 2,249,387 - LRK53_RS10055 0.58 +2.0 2,249,387 - LRK53_RS10055 0.58 +0.2 2,249,387 - LRK53_RS10055 0.58 -0.4 2,249,538 + LRK53_RS10055 0.87 +0.4 2,249,539 - LRK53_RS10055 0.87 +1.0 2,249,539 - LRK53_RS10055 0.87 +0.2 2,249,587 - +1.0 2,249,658 + +2.1 2,249,659 - -1.0 2,249,888 + LRK53_RS10060 0.43 -0.6 2,249,888 + LRK53_RS10060 0.43 +2.0 2,249,889 - LRK53_RS10060 0.43 -2.6 2,249,889 - LRK53_RS10060 0.43 -0.5 2,249,889 - LRK53_RS10060 0.43 +0.4 2,250,029 + LRK53_RS10060 0.66 +0.7 2,250,029 + LRK53_RS10060 0.66 +0.2 2,250,029 + LRK53_RS10060 0.66 -0.0 2,250,029 + LRK53_RS10060 0.66 +0.9 2,250,029 + LRK53_RS10060 0.66 -0.2 2,250,030 - LRK53_RS10060 0.66 -1.1 2,250,030 - LRK53_RS10060 0.66 +0.1
Or see this region's nucleotide sequence