Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09890 and LRK53_RS09895 overlap by 4 nucleotides LRK53_RS09895 and LRK53_RS09900 are separated by 533 nucleotides LRK53_RS09900 and LRK53_RS09905 overlap by 1 nucleotides LRK53_RS09905 and LRK53_RS09910 are separated by 12 nucleotides
LRK53_RS09890: LRK53_RS09890 - peptide-methionine (S)-S-oxide reductase MsrA, at 2,221,510 to 2,222,019
_RS09890
LRK53_RS09895: LRK53_RS09895 - peptide-methionine (R)-S-oxide reductase MsrB, at 2,222,016 to 2,222,465
_RS09895
LRK53_RS09900: LRK53_RS09900 - transcriptional repressor LexA, at 2,222,999 to 2,223,619
_RS09900
LRK53_RS09905: LRK53_RS09905 - translesion DNA synthesis-associated protein ImuA, at 2,223,619 to 2,224,242
_RS09905
LRK53_RS09910: LRK53_RS09910 - DNA polymerase Y family protein, at 2,224,255 to 2,225,658
_RS09910
Position (kb)
2222
2223
2224 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2222.045 kb on - strand at 2222.045 kb on - strand at 2222.113 kb on + strand, within LRK53_RS09895 at 2222.114 kb on - strand, within LRK53_RS09895 at 2222.114 kb on - strand, within LRK53_RS09895 at 2222.114 kb on - strand, within LRK53_RS09895 at 2222.216 kb on + strand, within LRK53_RS09895 at 2222.216 kb on + strand, within LRK53_RS09895 at 2222.217 kb on - strand, within LRK53_RS09895 at 2222.217 kb on - strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.335 kb on + strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.336 kb on - strand, within LRK53_RS09895 at 2222.362 kb on + strand, within LRK53_RS09895 at 2222.362 kb on + strand, within LRK53_RS09895 at 2222.363 kb on - strand, within LRK53_RS09895 at 2222.363 kb on - strand, within LRK53_RS09895 at 2222.363 kb on - strand, within LRK53_RS09895 at 2222.363 kb on - strand, within LRK53_RS09895 at 2222.363 kb on - strand, within LRK53_RS09895 at 2222.456 kb on - strand at 2222.456 kb on - strand at 2222.456 kb on - strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.522 kb on + strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.523 kb on - strand at 2222.630 kb on + strand at 2222.631 kb on - strand at 2222.631 kb on - strand at 2222.631 kb on - strand at 2222.742 kb on + strand at 2222.749 kb on - strand at 2222.750 kb on + strand at 2222.958 kb on + strand at 2222.975 kb on + strand at 2222.975 kb on + strand at 2222.975 kb on + strand at 2222.976 kb on - strand at 2222.976 kb on - strand at 2222.980 kb on - strand at 2222.989 kb on + strand at 2222.989 kb on + strand at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.319 kb on - strand, within LRK53_RS09900 at 2223.350 kb on + strand, within LRK53_RS09900 at 2223.350 kb on + strand, within LRK53_RS09900 at 2223.350 kb on + strand, within LRK53_RS09900 at 2223.351 kb on - strand, within LRK53_RS09900 at 2223.351 kb on - strand, within LRK53_RS09900 at 2223.351 kb on - strand, within LRK53_RS09900 at 2223.497 kb on + strand, within LRK53_RS09900 at 2223.497 kb on + strand, within LRK53_RS09900 at 2223.498 kb on - strand, within LRK53_RS09900 at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.593 kb on + strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.594 kb on - strand at 2223.877 kb on + strand, within LRK53_RS09905 at 2223.877 kb on + strand, within LRK53_RS09905 at 2223.877 kb on + strand, within LRK53_RS09905 at 2223.877 kb on + strand, within LRK53_RS09905 at 2223.878 kb on - strand, within LRK53_RS09905 at 2223.878 kb on - strand, within LRK53_RS09905 at 2224.422 kb on + strand, within LRK53_RS09910 at 2224.578 kb on + strand, within LRK53_RS09910 at 2224.578 kb on + strand, within LRK53_RS09910 at 2224.578 kb on + strand, within LRK53_RS09910 at 2224.578 kb on + strand, within LRK53_RS09910 at 2224.578 kb on + strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910 at 2224.579 kb on - strand, within LRK53_RS09910
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,222,045 - +0.9 2,222,045 - -1.6 2,222,113 + LRK53_RS09895 0.22 -0.5 2,222,114 - LRK53_RS09895 0.22 -0.4 2,222,114 - LRK53_RS09895 0.22 -0.6 2,222,114 - LRK53_RS09895 0.22 -0.8 2,222,216 + LRK53_RS09895 0.44 -0.4 2,222,216 + LRK53_RS09895 0.44 -1.4 2,222,217 - LRK53_RS09895 0.45 -0.5 2,222,217 - LRK53_RS09895 0.45 -0.7 2,222,335 + LRK53_RS09895 0.71 -0.8 2,222,335 + LRK53_RS09895 0.71 -1.9 2,222,335 + LRK53_RS09895 0.71 -1.6 2,222,335 + LRK53_RS09895 0.71 -1.8 2,222,335 + LRK53_RS09895 0.71 +0.1 2,222,335 + LRK53_RS09895 0.71 -1.1 2,222,335 + LRK53_RS09895 0.71 -0.0 2,222,336 - LRK53_RS09895 0.71 -0.2 2,222,336 - LRK53_RS09895 0.71 +1.6 2,222,336 - LRK53_RS09895 0.71 +0.5 2,222,336 - LRK53_RS09895 0.71 -0.2 2,222,336 - LRK53_RS09895 0.71 +1.0 2,222,336 - LRK53_RS09895 0.71 -1.4 2,222,336 - LRK53_RS09895 0.71 -0.8 2,222,336 - LRK53_RS09895 0.71 -0.8 2,222,336 - LRK53_RS09895 0.71 +1.4 2,222,336 - LRK53_RS09895 0.71 -1.6 2,222,336 - LRK53_RS09895 0.71 -0.9 2,222,336 - LRK53_RS09895 0.71 -0.5 2,222,336 - LRK53_RS09895 0.71 -1.2 2,222,336 - LRK53_RS09895 0.71 -0.1 2,222,362 + LRK53_RS09895 0.77 -1.3 2,222,362 + LRK53_RS09895 0.77 +1.0 2,222,363 - LRK53_RS09895 0.77 +1.1 2,222,363 - LRK53_RS09895 0.77 +0.2 2,222,363 - LRK53_RS09895 0.77 -1.4 2,222,363 - LRK53_RS09895 0.77 -0.7 2,222,363 - LRK53_RS09895 0.77 -0.4 2,222,456 - -1.4 2,222,456 - +0.3 2,222,456 - -1.4 2,222,522 + +0.8 2,222,522 + +1.2 2,222,522 + -1.1 2,222,522 + -0.7 2,222,522 + -0.7 2,222,522 + +0.2 2,222,522 + -1.8 2,222,522 + +0.3 2,222,523 - -0.4 2,222,523 - +0.3 2,222,523 - +0.1 2,222,523 - +0.0 2,222,523 - -0.9 2,222,523 - -2.0 2,222,523 - -1.6 2,222,523 - -0.9 2,222,523 - -0.4 2,222,523 - -0.8 2,222,523 - -0.7 2,222,523 - -1.2 2,222,523 - -1.3 2,222,523 - +2.4 2,222,523 - -0.5 2,222,523 - +0.3 2,222,523 - +0.4 2,222,523 - +0.4 2,222,523 - -0.9 2,222,523 - -0.2 2,222,523 - -1.5 2,222,523 - -0.9 2,222,523 - -0.4 2,222,523 - -0.4 2,222,523 - +0.4 2,222,630 + -1.6 2,222,631 - +0.7 2,222,631 - -1.7 2,222,631 - +1.2 2,222,742 + -1.4 2,222,749 - +0.2 2,222,750 + -0.1 2,222,958 + -0.5 2,222,975 + -0.8 2,222,975 + -0.3 2,222,975 + +1.2 2,222,976 - -0.6 2,222,976 - +1.4 2,222,980 - -0.6 2,222,989 + +0.8 2,222,989 + -0.3 2,223,319 - LRK53_RS09900 0.52 -1.7 2,223,319 - LRK53_RS09900 0.52 -1.2 2,223,319 - LRK53_RS09900 0.52 -2.1 2,223,319 - LRK53_RS09900 0.52 +0.7 2,223,319 - LRK53_RS09900 0.52 -0.5 2,223,319 - LRK53_RS09900 0.52 +0.8 2,223,319 - LRK53_RS09900 0.52 +2.2 2,223,350 + LRK53_RS09900 0.57 -0.2 2,223,350 + LRK53_RS09900 0.57 +1.1 2,223,350 + LRK53_RS09900 0.57 +1.6 2,223,351 - LRK53_RS09900 0.57 +1.4 2,223,351 - LRK53_RS09900 0.57 -1.6 2,223,351 - LRK53_RS09900 0.57 +1.8 2,223,497 + LRK53_RS09900 0.80 +0.2 2,223,497 + LRK53_RS09900 0.80 -0.9 2,223,498 - LRK53_RS09900 0.80 -0.8 2,223,593 + -1.2 2,223,593 + +0.4 2,223,593 + +2.6 2,223,593 + +1.6 2,223,593 + +0.0 2,223,593 + +0.2 2,223,593 + +0.8 2,223,593 + -0.1 2,223,593 + -0.8 2,223,593 + -2.3 2,223,593 + -0.4 2,223,594 - -1.7 2,223,594 - -1.9 2,223,594 - +0.4 2,223,594 - -0.5 2,223,594 - -0.9 2,223,594 - -1.1 2,223,594 - +2.6 2,223,594 - -0.2 2,223,594 - -3.1 2,223,877 + LRK53_RS09905 0.41 +1.8 2,223,877 + LRK53_RS09905 0.41 -0.9 2,223,877 + LRK53_RS09905 0.41 -0.4 2,223,877 + LRK53_RS09905 0.41 +0.4 2,223,878 - LRK53_RS09905 0.42 -1.1 2,223,878 - LRK53_RS09905 0.42 +0.6 2,224,422 + LRK53_RS09910 0.12 +0.3 2,224,578 + LRK53_RS09910 0.23 -0.4 2,224,578 + LRK53_RS09910 0.23 -0.2 2,224,578 + LRK53_RS09910 0.23 +1.6 2,224,578 + LRK53_RS09910 0.23 +0.4 2,224,578 + LRK53_RS09910 0.23 +0.3 2,224,579 - LRK53_RS09910 0.23 -0.4 2,224,579 - LRK53_RS09910 0.23 +0.9 2,224,579 - LRK53_RS09910 0.23 +0.1 2,224,579 - LRK53_RS09910 0.23 +1.5 2,224,579 - LRK53_RS09910 0.23 -1.2 2,224,579 - LRK53_RS09910 0.23 -0.8 2,224,579 - LRK53_RS09910 0.23 -0.1 2,224,579 - LRK53_RS09910 0.23 +0.1 2,224,579 - LRK53_RS09910 0.23 +0.8 2,224,579 - LRK53_RS09910 0.23 +0.7
Or see this region's nucleotide sequence