Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09900

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09890 and LRK53_RS09895 overlap by 4 nucleotidesLRK53_RS09895 and LRK53_RS09900 are separated by 533 nucleotidesLRK53_RS09900 and LRK53_RS09905 overlap by 1 nucleotidesLRK53_RS09905 and LRK53_RS09910 are separated by 12 nucleotides LRK53_RS09890: LRK53_RS09890 - peptide-methionine (S)-S-oxide reductase MsrA, at 2,221,510 to 2,222,019 _RS09890 LRK53_RS09895: LRK53_RS09895 - peptide-methionine (R)-S-oxide reductase MsrB, at 2,222,016 to 2,222,465 _RS09895 LRK53_RS09900: LRK53_RS09900 - transcriptional repressor LexA, at 2,222,999 to 2,223,619 _RS09900 LRK53_RS09905: LRK53_RS09905 - translesion DNA synthesis-associated protein ImuA, at 2,223,619 to 2,224,242 _RS09905 LRK53_RS09910: LRK53_RS09910 - DNA polymerase Y family protein, at 2,224,255 to 2,225,658 _RS09910 Position (kb) 2222 2223 2224Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2222.045 kb on - strandat 2222.045 kb on - strandat 2222.113 kb on + strand, within LRK53_RS09895at 2222.114 kb on - strand, within LRK53_RS09895at 2222.114 kb on - strand, within LRK53_RS09895at 2222.114 kb on - strand, within LRK53_RS09895at 2222.216 kb on + strand, within LRK53_RS09895at 2222.216 kb on + strand, within LRK53_RS09895at 2222.217 kb on - strand, within LRK53_RS09895at 2222.217 kb on - strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.335 kb on + strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.336 kb on - strand, within LRK53_RS09895at 2222.362 kb on + strand, within LRK53_RS09895at 2222.362 kb on + strand, within LRK53_RS09895at 2222.363 kb on - strand, within LRK53_RS09895at 2222.363 kb on - strand, within LRK53_RS09895at 2222.363 kb on - strand, within LRK53_RS09895at 2222.363 kb on - strand, within LRK53_RS09895at 2222.363 kb on - strand, within LRK53_RS09895at 2222.456 kb on - strandat 2222.456 kb on - strandat 2222.456 kb on - strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.522 kb on + strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.523 kb on - strandat 2222.630 kb on + strandat 2222.631 kb on - strandat 2222.631 kb on - strandat 2222.631 kb on - strandat 2222.742 kb on + strandat 2222.749 kb on - strandat 2222.750 kb on + strandat 2222.958 kb on + strandat 2222.975 kb on + strandat 2222.975 kb on + strandat 2222.975 kb on + strandat 2222.976 kb on - strandat 2222.976 kb on - strandat 2222.980 kb on - strandat 2222.989 kb on + strandat 2222.989 kb on + strandat 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.319 kb on - strand, within LRK53_RS09900at 2223.350 kb on + strand, within LRK53_RS09900at 2223.350 kb on + strand, within LRK53_RS09900at 2223.350 kb on + strand, within LRK53_RS09900at 2223.351 kb on - strand, within LRK53_RS09900at 2223.351 kb on - strand, within LRK53_RS09900at 2223.351 kb on - strand, within LRK53_RS09900at 2223.497 kb on + strand, within LRK53_RS09900at 2223.497 kb on + strand, within LRK53_RS09900at 2223.498 kb on - strand, within LRK53_RS09900at 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.593 kb on + strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.594 kb on - strandat 2223.877 kb on + strand, within LRK53_RS09905at 2223.877 kb on + strand, within LRK53_RS09905at 2223.877 kb on + strand, within LRK53_RS09905at 2223.877 kb on + strand, within LRK53_RS09905at 2223.878 kb on - strand, within LRK53_RS09905at 2223.878 kb on - strand, within LRK53_RS09905at 2224.422 kb on + strand, within LRK53_RS09910at 2224.578 kb on + strand, within LRK53_RS09910at 2224.578 kb on + strand, within LRK53_RS09910at 2224.578 kb on + strand, within LRK53_RS09910at 2224.578 kb on + strand, within LRK53_RS09910at 2224.578 kb on + strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910at 2224.579 kb on - strand, within LRK53_RS09910

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,222,045 - +0.9
2,222,045 - -1.6
2,222,113 + LRK53_RS09895 0.22 -0.5
2,222,114 - LRK53_RS09895 0.22 -0.4
2,222,114 - LRK53_RS09895 0.22 -0.6
2,222,114 - LRK53_RS09895 0.22 -0.8
2,222,216 + LRK53_RS09895 0.44 -0.4
2,222,216 + LRK53_RS09895 0.44 -1.4
2,222,217 - LRK53_RS09895 0.45 -0.5
2,222,217 - LRK53_RS09895 0.45 -0.7
2,222,335 + LRK53_RS09895 0.71 -0.8
2,222,335 + LRK53_RS09895 0.71 -1.9
2,222,335 + LRK53_RS09895 0.71 -1.6
2,222,335 + LRK53_RS09895 0.71 -1.8
2,222,335 + LRK53_RS09895 0.71 +0.1
2,222,335 + LRK53_RS09895 0.71 -1.1
2,222,335 + LRK53_RS09895 0.71 -0.0
2,222,336 - LRK53_RS09895 0.71 -0.2
2,222,336 - LRK53_RS09895 0.71 +1.6
2,222,336 - LRK53_RS09895 0.71 +0.5
2,222,336 - LRK53_RS09895 0.71 -0.2
2,222,336 - LRK53_RS09895 0.71 +1.0
2,222,336 - LRK53_RS09895 0.71 -1.4
2,222,336 - LRK53_RS09895 0.71 -0.8
2,222,336 - LRK53_RS09895 0.71 -0.8
2,222,336 - LRK53_RS09895 0.71 +1.4
2,222,336 - LRK53_RS09895 0.71 -1.6
2,222,336 - LRK53_RS09895 0.71 -0.9
2,222,336 - LRK53_RS09895 0.71 -0.5
2,222,336 - LRK53_RS09895 0.71 -1.2
2,222,336 - LRK53_RS09895 0.71 -0.1
2,222,362 + LRK53_RS09895 0.77 -1.3
2,222,362 + LRK53_RS09895 0.77 +1.0
2,222,363 - LRK53_RS09895 0.77 +1.1
2,222,363 - LRK53_RS09895 0.77 +0.2
2,222,363 - LRK53_RS09895 0.77 -1.4
2,222,363 - LRK53_RS09895 0.77 -0.7
2,222,363 - LRK53_RS09895 0.77 -0.4
2,222,456 - -1.4
2,222,456 - +0.3
2,222,456 - -1.4
2,222,522 + +0.8
2,222,522 + +1.2
2,222,522 + -1.1
2,222,522 + -0.7
2,222,522 + -0.7
2,222,522 + +0.2
2,222,522 + -1.8
2,222,522 + +0.3
2,222,523 - -0.4
2,222,523 - +0.3
2,222,523 - +0.1
2,222,523 - +0.0
2,222,523 - -0.9
2,222,523 - -2.0
2,222,523 - -1.6
2,222,523 - -0.9
2,222,523 - -0.4
2,222,523 - -0.8
2,222,523 - -0.7
2,222,523 - -1.2
2,222,523 - -1.3
2,222,523 - +2.4
2,222,523 - -0.5
2,222,523 - +0.3
2,222,523 - +0.4
2,222,523 - +0.4
2,222,523 - -0.9
2,222,523 - -0.2
2,222,523 - -1.5
2,222,523 - -0.9
2,222,523 - -0.4
2,222,523 - -0.4
2,222,523 - +0.4
2,222,630 + -1.6
2,222,631 - +0.7
2,222,631 - -1.7
2,222,631 - +1.2
2,222,742 + -1.4
2,222,749 - +0.2
2,222,750 + -0.1
2,222,958 + -0.5
2,222,975 + -0.8
2,222,975 + -0.3
2,222,975 + +1.2
2,222,976 - -0.6
2,222,976 - +1.4
2,222,980 - -0.6
2,222,989 + +0.8
2,222,989 + -0.3
2,223,319 - LRK53_RS09900 0.52 -1.7
2,223,319 - LRK53_RS09900 0.52 -1.2
2,223,319 - LRK53_RS09900 0.52 -2.1
2,223,319 - LRK53_RS09900 0.52 +0.7
2,223,319 - LRK53_RS09900 0.52 -0.5
2,223,319 - LRK53_RS09900 0.52 +0.8
2,223,319 - LRK53_RS09900 0.52 +2.2
2,223,350 + LRK53_RS09900 0.57 -0.2
2,223,350 + LRK53_RS09900 0.57 +1.1
2,223,350 + LRK53_RS09900 0.57 +1.6
2,223,351 - LRK53_RS09900 0.57 +1.4
2,223,351 - LRK53_RS09900 0.57 -1.6
2,223,351 - LRK53_RS09900 0.57 +1.8
2,223,497 + LRK53_RS09900 0.80 +0.2
2,223,497 + LRK53_RS09900 0.80 -0.9
2,223,498 - LRK53_RS09900 0.80 -0.8
2,223,593 + -1.2
2,223,593 + +0.4
2,223,593 + +2.6
2,223,593 + +1.6
2,223,593 + +0.0
2,223,593 + +0.2
2,223,593 + +0.8
2,223,593 + -0.1
2,223,593 + -0.8
2,223,593 + -2.3
2,223,593 + -0.4
2,223,594 - -1.7
2,223,594 - -1.9
2,223,594 - +0.4
2,223,594 - -0.5
2,223,594 - -0.9
2,223,594 - -1.1
2,223,594 - +2.6
2,223,594 - -0.2
2,223,594 - -3.1
2,223,877 + LRK53_RS09905 0.41 +1.8
2,223,877 + LRK53_RS09905 0.41 -0.9
2,223,877 + LRK53_RS09905 0.41 -0.4
2,223,877 + LRK53_RS09905 0.41 +0.4
2,223,878 - LRK53_RS09905 0.42 -1.1
2,223,878 - LRK53_RS09905 0.42 +0.6
2,224,422 + LRK53_RS09910 0.12 +0.3
2,224,578 + LRK53_RS09910 0.23 -0.4
2,224,578 + LRK53_RS09910 0.23 -0.2
2,224,578 + LRK53_RS09910 0.23 +1.6
2,224,578 + LRK53_RS09910 0.23 +0.4
2,224,578 + LRK53_RS09910 0.23 +0.3
2,224,579 - LRK53_RS09910 0.23 -0.4
2,224,579 - LRK53_RS09910 0.23 +0.9
2,224,579 - LRK53_RS09910 0.23 +0.1
2,224,579 - LRK53_RS09910 0.23 +1.5
2,224,579 - LRK53_RS09910 0.23 -1.2
2,224,579 - LRK53_RS09910 0.23 -0.8
2,224,579 - LRK53_RS09910 0.23 -0.1
2,224,579 - LRK53_RS09910 0.23 +0.1
2,224,579 - LRK53_RS09910 0.23 +0.8
2,224,579 - LRK53_RS09910 0.23 +0.7

Or see this region's nucleotide sequence