Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09860 and LRK53_RS09865 overlap by 4 nucleotides LRK53_RS09865 and LRK53_RS09870 are separated by 51 nucleotides LRK53_RS09870 and LRK53_RS09875 are separated by 8 nucleotides LRK53_RS09875 and LRK53_RS09880 are separated by 135 nucleotides
LRK53_RS09860: LRK53_RS09860 - lysine--tRNA ligase, at 2,214,240 to 2,215,760
_RS09860
LRK53_RS09865: LRK53_RS09865 - thioesterase, at 2,215,757 to 2,216,251
_RS09865
LRK53_RS09870: LRK53_RS09870 - YciI family protein, at 2,216,303 to 2,216,605
_RS09870
LRK53_RS09875: LRK53_RS09875 - BolA family transcriptional regulator, at 2,216,614 to 2,216,859
_RS09875
LRK53_RS09880: LRK53_RS09880 - chromosome segregation protein SMC, at 2,216,995 to 2,220,504
_RS09880
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2215.934 kb on + strand, within LRK53_RS09865 at 2215.934 kb on + strand, within LRK53_RS09865 at 2215.934 kb on + strand, within LRK53_RS09865 at 2215.935 kb on - strand, within LRK53_RS09865 at 2215.935 kb on - strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.162 kb on + strand, within LRK53_RS09865 at 2216.163 kb on - strand, within LRK53_RS09865 at 2216.163 kb on - strand, within LRK53_RS09865 at 2216.163 kb on - strand, within LRK53_RS09865 at 2216.163 kb on - strand, within LRK53_RS09865 at 2216.267 kb on - strand at 2216.374 kb on + strand, within LRK53_RS09870 at 2216.374 kb on + strand, within LRK53_RS09870 at 2216.375 kb on - strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.540 kb on + strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.541 kb on - strand, within LRK53_RS09870 at 2216.558 kb on + strand, within LRK53_RS09870 at 2216.558 kb on + strand, within LRK53_RS09870 at 2216.558 kb on + strand, within LRK53_RS09870 at 2216.558 kb on + strand, within LRK53_RS09870 at 2216.558 kb on + strand, within LRK53_RS09870 at 2216.559 kb on - strand, within LRK53_RS09870 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.736 kb on + strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.737 kb on - strand, within LRK53_RS09875 at 2216.880 kb on + strand at 2216.881 kb on - strand at 2216.881 kb on - strand at 2216.881 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,215,934 + LRK53_RS09865 0.36 -0.4 2,215,934 + LRK53_RS09865 0.36 +0.4 2,215,934 + LRK53_RS09865 0.36 -0.1 2,215,935 - LRK53_RS09865 0.36 -1.5 2,215,935 - LRK53_RS09865 0.36 -1.7 2,216,162 + LRK53_RS09865 0.82 +0.9 2,216,162 + LRK53_RS09865 0.82 -1.6 2,216,162 + LRK53_RS09865 0.82 -0.9 2,216,162 + LRK53_RS09865 0.82 -0.9 2,216,162 + LRK53_RS09865 0.82 -2.0 2,216,162 + LRK53_RS09865 0.82 -0.2 2,216,163 - LRK53_RS09865 0.82 -1.0 2,216,163 - LRK53_RS09865 0.82 -2.2 2,216,163 - LRK53_RS09865 0.82 -0.6 2,216,163 - LRK53_RS09865 0.82 -0.9 2,216,267 - -0.8 2,216,374 + LRK53_RS09870 0.23 -0.5 2,216,374 + LRK53_RS09870 0.23 -0.6 2,216,375 - LRK53_RS09870 0.24 -1.4 2,216,540 + LRK53_RS09870 0.78 +0.6 2,216,540 + LRK53_RS09870 0.78 -0.4 2,216,540 + LRK53_RS09870 0.78 +1.6 2,216,540 + LRK53_RS09870 0.78 -0.5 2,216,540 + LRK53_RS09870 0.78 +1.5 2,216,540 + LRK53_RS09870 0.78 -1.6 2,216,540 + LRK53_RS09870 0.78 -0.1 2,216,540 + LRK53_RS09870 0.78 -2.1 2,216,540 + LRK53_RS09870 0.78 -1.2 2,216,540 + LRK53_RS09870 0.78 +0.8 2,216,540 + LRK53_RS09870 0.78 -0.5 2,216,540 + LRK53_RS09870 0.78 -2.4 2,216,540 + LRK53_RS09870 0.78 -1.2 2,216,540 + LRK53_RS09870 0.78 -0.7 2,216,540 + LRK53_RS09870 0.78 +0.1 2,216,540 + LRK53_RS09870 0.78 -0.9 2,216,540 + LRK53_RS09870 0.78 -1.6 2,216,541 - LRK53_RS09870 0.79 +0.1 2,216,541 - LRK53_RS09870 0.79 -2.2 2,216,541 - LRK53_RS09870 0.79 +0.2 2,216,541 - LRK53_RS09870 0.79 -0.4 2,216,541 - LRK53_RS09870 0.79 -1.3 2,216,541 - LRK53_RS09870 0.79 +0.4 2,216,541 - LRK53_RS09870 0.79 -0.8 2,216,558 + LRK53_RS09870 0.84 -1.2 2,216,558 + LRK53_RS09870 0.84 +0.1 2,216,558 + LRK53_RS09870 0.84 -0.8 2,216,558 + LRK53_RS09870 0.84 -1.3 2,216,558 + LRK53_RS09870 0.84 -0.7 2,216,559 - LRK53_RS09870 0.84 -1.7 2,216,736 + LRK53_RS09875 0.50 +2.1 2,216,736 + LRK53_RS09875 0.50 +1.4 2,216,736 + LRK53_RS09875 0.50 -0.6 2,216,736 + LRK53_RS09875 0.50 +0.8 2,216,736 + LRK53_RS09875 0.50 -1.7 2,216,736 + LRK53_RS09875 0.50 -1.4 2,216,736 + LRK53_RS09875 0.50 -0.4 2,216,736 + LRK53_RS09875 0.50 -1.0 2,216,736 + LRK53_RS09875 0.50 -1.4 2,216,736 + LRK53_RS09875 0.50 -1.2 2,216,736 + LRK53_RS09875 0.50 +1.0 2,216,736 + LRK53_RS09875 0.50 -0.9 2,216,736 + LRK53_RS09875 0.50 +0.8 2,216,736 + LRK53_RS09875 0.50 -1.1 2,216,736 + LRK53_RS09875 0.50 +0.8 2,216,736 + LRK53_RS09875 0.50 -2.2 2,216,737 - LRK53_RS09875 0.50 -0.4 2,216,737 - LRK53_RS09875 0.50 +1.3 2,216,737 - LRK53_RS09875 0.50 +0.0 2,216,737 - LRK53_RS09875 0.50 -0.7 2,216,737 - LRK53_RS09875 0.50 +0.9 2,216,737 - LRK53_RS09875 0.50 -2.2 2,216,737 - LRK53_RS09875 0.50 -1.8 2,216,737 - LRK53_RS09875 0.50 -0.8 2,216,737 - LRK53_RS09875 0.50 +0.3 2,216,737 - LRK53_RS09875 0.50 -0.9 2,216,737 - LRK53_RS09875 0.50 -0.0 2,216,880 + -0.2 2,216,881 - -1.0 2,216,881 - -0.1 2,216,881 - -3.0
Or see this region's nucleotide sequence