Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09865

Experiment: Biofilm; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS09860 and LRK53_RS09865 overlap by 4 nucleotidesLRK53_RS09865 and LRK53_RS09870 are separated by 51 nucleotidesLRK53_RS09870 and LRK53_RS09875 are separated by 8 nucleotidesLRK53_RS09875 and LRK53_RS09880 are separated by 135 nucleotides LRK53_RS09860: LRK53_RS09860 - lysine--tRNA ligase, at 2,214,240 to 2,215,760 _RS09860 LRK53_RS09865: LRK53_RS09865 - thioesterase, at 2,215,757 to 2,216,251 _RS09865 LRK53_RS09870: LRK53_RS09870 - YciI family protein, at 2,216,303 to 2,216,605 _RS09870 LRK53_RS09875: LRK53_RS09875 - BolA family transcriptional regulator, at 2,216,614 to 2,216,859 _RS09875 LRK53_RS09880: LRK53_RS09880 - chromosome segregation protein SMC, at 2,216,995 to 2,220,504 _RS09880 Position (kb) 2215 2216 2217Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2215.934 kb on + strand, within LRK53_RS09865at 2215.934 kb on + strand, within LRK53_RS09865at 2215.934 kb on + strand, within LRK53_RS09865at 2215.935 kb on - strand, within LRK53_RS09865at 2215.935 kb on - strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.162 kb on + strand, within LRK53_RS09865at 2216.163 kb on - strand, within LRK53_RS09865at 2216.163 kb on - strand, within LRK53_RS09865at 2216.163 kb on - strand, within LRK53_RS09865at 2216.163 kb on - strand, within LRK53_RS09865at 2216.267 kb on - strandat 2216.374 kb on + strand, within LRK53_RS09870at 2216.374 kb on + strand, within LRK53_RS09870at 2216.375 kb on - strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.540 kb on + strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.541 kb on - strand, within LRK53_RS09870at 2216.558 kb on + strand, within LRK53_RS09870at 2216.558 kb on + strand, within LRK53_RS09870at 2216.558 kb on + strand, within LRK53_RS09870at 2216.558 kb on + strand, within LRK53_RS09870at 2216.558 kb on + strand, within LRK53_RS09870at 2216.559 kb on - strand, within LRK53_RS09870at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.736 kb on + strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.737 kb on - strand, within LRK53_RS09875at 2216.880 kb on + strandat 2216.881 kb on - strandat 2216.881 kb on - strandat 2216.881 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
remove
2,215,934 + LRK53_RS09865 0.36 -0.4
2,215,934 + LRK53_RS09865 0.36 +0.4
2,215,934 + LRK53_RS09865 0.36 -0.1
2,215,935 - LRK53_RS09865 0.36 -1.5
2,215,935 - LRK53_RS09865 0.36 -1.7
2,216,162 + LRK53_RS09865 0.82 +0.9
2,216,162 + LRK53_RS09865 0.82 -1.6
2,216,162 + LRK53_RS09865 0.82 -0.9
2,216,162 + LRK53_RS09865 0.82 -0.9
2,216,162 + LRK53_RS09865 0.82 -2.0
2,216,162 + LRK53_RS09865 0.82 -0.2
2,216,163 - LRK53_RS09865 0.82 -1.0
2,216,163 - LRK53_RS09865 0.82 -2.2
2,216,163 - LRK53_RS09865 0.82 -0.6
2,216,163 - LRK53_RS09865 0.82 -0.9
2,216,267 - -0.8
2,216,374 + LRK53_RS09870 0.23 -0.5
2,216,374 + LRK53_RS09870 0.23 -0.6
2,216,375 - LRK53_RS09870 0.24 -1.4
2,216,540 + LRK53_RS09870 0.78 +0.6
2,216,540 + LRK53_RS09870 0.78 -0.4
2,216,540 + LRK53_RS09870 0.78 +1.6
2,216,540 + LRK53_RS09870 0.78 -0.5
2,216,540 + LRK53_RS09870 0.78 +1.5
2,216,540 + LRK53_RS09870 0.78 -1.6
2,216,540 + LRK53_RS09870 0.78 -0.1
2,216,540 + LRK53_RS09870 0.78 -2.1
2,216,540 + LRK53_RS09870 0.78 -1.2
2,216,540 + LRK53_RS09870 0.78 +0.8
2,216,540 + LRK53_RS09870 0.78 -0.5
2,216,540 + LRK53_RS09870 0.78 -2.4
2,216,540 + LRK53_RS09870 0.78 -1.2
2,216,540 + LRK53_RS09870 0.78 -0.7
2,216,540 + LRK53_RS09870 0.78 +0.1
2,216,540 + LRK53_RS09870 0.78 -0.9
2,216,540 + LRK53_RS09870 0.78 -1.6
2,216,541 - LRK53_RS09870 0.79 +0.1
2,216,541 - LRK53_RS09870 0.79 -2.2
2,216,541 - LRK53_RS09870 0.79 +0.2
2,216,541 - LRK53_RS09870 0.79 -0.4
2,216,541 - LRK53_RS09870 0.79 -1.3
2,216,541 - LRK53_RS09870 0.79 +0.4
2,216,541 - LRK53_RS09870 0.79 -0.8
2,216,558 + LRK53_RS09870 0.84 -1.2
2,216,558 + LRK53_RS09870 0.84 +0.1
2,216,558 + LRK53_RS09870 0.84 -0.8
2,216,558 + LRK53_RS09870 0.84 -1.3
2,216,558 + LRK53_RS09870 0.84 -0.7
2,216,559 - LRK53_RS09870 0.84 -1.7
2,216,736 + LRK53_RS09875 0.50 +2.1
2,216,736 + LRK53_RS09875 0.50 +1.4
2,216,736 + LRK53_RS09875 0.50 -0.6
2,216,736 + LRK53_RS09875 0.50 +0.8
2,216,736 + LRK53_RS09875 0.50 -1.7
2,216,736 + LRK53_RS09875 0.50 -1.4
2,216,736 + LRK53_RS09875 0.50 -0.4
2,216,736 + LRK53_RS09875 0.50 -1.0
2,216,736 + LRK53_RS09875 0.50 -1.4
2,216,736 + LRK53_RS09875 0.50 -1.2
2,216,736 + LRK53_RS09875 0.50 +1.0
2,216,736 + LRK53_RS09875 0.50 -0.9
2,216,736 + LRK53_RS09875 0.50 +0.8
2,216,736 + LRK53_RS09875 0.50 -1.1
2,216,736 + LRK53_RS09875 0.50 +0.8
2,216,736 + LRK53_RS09875 0.50 -2.2
2,216,737 - LRK53_RS09875 0.50 -0.4
2,216,737 - LRK53_RS09875 0.50 +1.3
2,216,737 - LRK53_RS09875 0.50 +0.0
2,216,737 - LRK53_RS09875 0.50 -0.7
2,216,737 - LRK53_RS09875 0.50 +0.9
2,216,737 - LRK53_RS09875 0.50 -2.2
2,216,737 - LRK53_RS09875 0.50 -1.8
2,216,737 - LRK53_RS09875 0.50 -0.8
2,216,737 - LRK53_RS09875 0.50 +0.3
2,216,737 - LRK53_RS09875 0.50 -0.9
2,216,737 - LRK53_RS09875 0.50 -0.0
2,216,880 + -0.2
2,216,881 - -1.0
2,216,881 - -0.1
2,216,881 - -3.0

Or see this region's nucleotide sequence