Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09825 and LRK53_RS09830 are separated by 4 nucleotides LRK53_RS09830 and LRK53_RS09835 overlap by 4 nucleotides
LRK53_RS09825: LRK53_RS09825 - ATP-binding cassette domain-containing protein, at 2,205,227 to 2,207,155
_RS09825
LRK53_RS09830: LRK53_RS09830 - phosphoglycerate mutase, at 2,207,160 to 2,208,080
_RS09830
LRK53_RS09835: LRK53_RS09835 - DHHA1 domain-containing protein, at 2,208,077 to 2,209,885
_RS09835
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2206.190 kb on + strand, within LRK53_RS09825 at 2206.392 kb on - strand, within LRK53_RS09825 at 2206.392 kb on - strand, within LRK53_RS09825 at 2206.800 kb on - strand, within LRK53_RS09825 at 2206.960 kb on - strand, within LRK53_RS09825 at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.039 kb on + strand at 2207.040 kb on - strand at 2207.040 kb on - strand at 2207.280 kb on + strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.281 kb on - strand, within LRK53_RS09830 at 2207.302 kb on - strand, within LRK53_RS09830 at 2207.302 kb on - strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.407 kb on + strand, within LRK53_RS09830 at 2207.408 kb on - strand, within LRK53_RS09830 at 2207.574 kb on - strand, within LRK53_RS09830 at 2208.164 kb on + strand at 2208.165 kb on - strand at 2208.165 kb on - strand at 2208.165 kb on - strand at 2208.314 kb on + strand, within LRK53_RS09835 at 2208.314 kb on + strand, within LRK53_RS09835 at 2208.315 kb on - strand, within LRK53_RS09835 at 2208.315 kb on - strand, within LRK53_RS09835 at 2208.389 kb on + strand, within LRK53_RS09835 at 2208.389 kb on + strand, within LRK53_RS09835 at 2208.390 kb on - strand, within LRK53_RS09835 at 2208.419 kb on + strand, within LRK53_RS09835 at 2208.458 kb on - strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.609 kb on + strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.610 kb on - strand, within LRK53_RS09835 at 2208.696 kb on + strand, within LRK53_RS09835 at 2208.697 kb on - strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.704 kb on + strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.705 kb on - strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.915 kb on + strand, within LRK53_RS09835 at 2208.916 kb on - strand, within LRK53_RS09835 at 2208.916 kb on - strand, within LRK53_RS09835
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,206,190 + LRK53_RS09825 0.50 -0.3 2,206,392 - LRK53_RS09825 0.60 +0.4 2,206,392 - LRK53_RS09825 0.60 +2.4 2,206,800 - LRK53_RS09825 0.82 -0.3 2,206,960 - LRK53_RS09825 0.90 -0.3 2,207,039 + +2.0 2,207,039 + +0.3 2,207,039 + -0.9 2,207,039 + -1.8 2,207,039 + -1.1 2,207,039 + -0.3 2,207,039 + -0.5 2,207,040 - -0.8 2,207,040 - +0.8 2,207,280 + LRK53_RS09830 0.13 +2.2 2,207,281 - LRK53_RS09830 0.13 +1.9 2,207,281 - LRK53_RS09830 0.13 +0.4 2,207,281 - LRK53_RS09830 0.13 +3.4 2,207,281 - LRK53_RS09830 0.13 -1.6 2,207,281 - LRK53_RS09830 0.13 +2.0 2,207,281 - LRK53_RS09830 0.13 +1.0 2,207,302 - LRK53_RS09830 0.15 +0.3 2,207,302 - LRK53_RS09830 0.15 -2.2 2,207,407 + LRK53_RS09830 0.27 -0.4 2,207,407 + LRK53_RS09830 0.27 -0.1 2,207,407 + LRK53_RS09830 0.27 -0.2 2,207,407 + LRK53_RS09830 0.27 +0.1 2,207,408 - LRK53_RS09830 0.27 -0.4 2,207,574 - LRK53_RS09830 0.45 -0.2 2,208,164 + +0.5 2,208,165 - -0.7 2,208,165 - -0.1 2,208,165 - +0.5 2,208,314 + LRK53_RS09835 0.13 -0.3 2,208,314 + LRK53_RS09835 0.13 -0.8 2,208,315 - LRK53_RS09835 0.13 -1.4 2,208,315 - LRK53_RS09835 0.13 -1.1 2,208,389 + LRK53_RS09835 0.17 -0.9 2,208,389 + LRK53_RS09835 0.17 +0.8 2,208,390 - LRK53_RS09835 0.17 -2.1 2,208,419 + LRK53_RS09835 0.19 +0.9 2,208,458 - LRK53_RS09835 0.21 -0.2 2,208,609 + LRK53_RS09835 0.29 +0.5 2,208,609 + LRK53_RS09835 0.29 +1.3 2,208,609 + LRK53_RS09835 0.29 -2.1 2,208,609 + LRK53_RS09835 0.29 -0.6 2,208,609 + LRK53_RS09835 0.29 -0.5 2,208,609 + LRK53_RS09835 0.29 -2.5 2,208,609 + LRK53_RS09835 0.29 -1.1 2,208,609 + LRK53_RS09835 0.29 -1.9 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.2 2,208,609 + LRK53_RS09835 0.29 -1.6 2,208,609 + LRK53_RS09835 0.29 -1.1 2,208,609 + LRK53_RS09835 0.29 +0.1 2,208,609 + LRK53_RS09835 0.29 -0.0 2,208,609 + LRK53_RS09835 0.29 -2.3 2,208,609 + LRK53_RS09835 0.29 +2.4 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,609 + LRK53_RS09835 0.29 -0.6 2,208,609 + LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.3 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 -0.6 2,208,610 - LRK53_RS09835 0.29 -0.7 2,208,610 - LRK53_RS09835 0.29 -1.9 2,208,610 - LRK53_RS09835 0.29 -0.0 2,208,610 - LRK53_RS09835 0.29 +1.4 2,208,610 - LRK53_RS09835 0.29 -0.5 2,208,610 - LRK53_RS09835 0.29 -1.6 2,208,610 - LRK53_RS09835 0.29 +0.2 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 -1.9 2,208,610 - LRK53_RS09835 0.29 -2.9 2,208,610 - LRK53_RS09835 0.29 -1.4 2,208,610 - LRK53_RS09835 0.29 +0.8 2,208,610 - LRK53_RS09835 0.29 -0.2 2,208,610 - LRK53_RS09835 0.29 -1.7 2,208,610 - LRK53_RS09835 0.29 +1.4 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -1.7 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -0.4 2,208,610 - LRK53_RS09835 0.29 +0.5 2,208,610 - LRK53_RS09835 0.29 +0.4 2,208,610 - LRK53_RS09835 0.29 -0.2 2,208,610 - LRK53_RS09835 0.29 -0.9 2,208,610 - LRK53_RS09835 0.29 +0.1 2,208,610 - LRK53_RS09835 0.29 -0.3 2,208,610 - LRK53_RS09835 0.29 -0.0 2,208,610 - LRK53_RS09835 0.29 +1.2 2,208,610 - LRK53_RS09835 0.29 -1.7 2,208,610 - LRK53_RS09835 0.29 +0.1 2,208,610 - LRK53_RS09835 0.29 -0.5 2,208,610 - LRK53_RS09835 0.29 -0.6 2,208,610 - LRK53_RS09835 0.29 -1.8 2,208,610 - LRK53_RS09835 0.29 -0.1 2,208,610 - LRK53_RS09835 0.29 -0.8 2,208,696 + LRK53_RS09835 0.34 -0.2 2,208,697 - LRK53_RS09835 0.34 +1.1 2,208,704 + LRK53_RS09835 0.35 +1.5 2,208,704 + LRK53_RS09835 0.35 -0.8 2,208,704 + LRK53_RS09835 0.35 +0.1 2,208,704 + LRK53_RS09835 0.35 -0.7 2,208,704 + LRK53_RS09835 0.35 -0.3 2,208,705 - LRK53_RS09835 0.35 -2.6 2,208,705 - LRK53_RS09835 0.35 -0.1 2,208,705 - LRK53_RS09835 0.35 -0.2 2,208,705 - LRK53_RS09835 0.35 +0.1 2,208,705 - LRK53_RS09835 0.35 -1.8 2,208,915 + LRK53_RS09835 0.46 -0.1 2,208,915 + LRK53_RS09835 0.46 -0.3 2,208,915 + LRK53_RS09835 0.46 -1.0 2,208,915 + LRK53_RS09835 0.46 -1.0 2,208,916 - LRK53_RS09835 0.46 -0.6 2,208,916 - LRK53_RS09835 0.46 -0.3
Or see this region's nucleotide sequence