Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09830

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09825 and LRK53_RS09830 are separated by 4 nucleotidesLRK53_RS09830 and LRK53_RS09835 overlap by 4 nucleotides LRK53_RS09825: LRK53_RS09825 - ATP-binding cassette domain-containing protein, at 2,205,227 to 2,207,155 _RS09825 LRK53_RS09830: LRK53_RS09830 - phosphoglycerate mutase, at 2,207,160 to 2,208,080 _RS09830 LRK53_RS09835: LRK53_RS09835 - DHHA1 domain-containing protein, at 2,208,077 to 2,209,885 _RS09835 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2206.190 kb on + strand, within LRK53_RS09825at 2206.392 kb on - strand, within LRK53_RS09825at 2206.392 kb on - strand, within LRK53_RS09825at 2206.800 kb on - strand, within LRK53_RS09825at 2206.960 kb on - strand, within LRK53_RS09825at 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.039 kb on + strandat 2207.040 kb on - strandat 2207.040 kb on - strandat 2207.280 kb on + strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.281 kb on - strand, within LRK53_RS09830at 2207.302 kb on - strand, within LRK53_RS09830at 2207.302 kb on - strand, within LRK53_RS09830at 2207.407 kb on + strand, within LRK53_RS09830at 2207.407 kb on + strand, within LRK53_RS09830at 2207.407 kb on + strand, within LRK53_RS09830at 2207.407 kb on + strand, within LRK53_RS09830at 2207.408 kb on - strand, within LRK53_RS09830at 2207.574 kb on - strand, within LRK53_RS09830at 2208.164 kb on + strandat 2208.165 kb on - strandat 2208.165 kb on - strandat 2208.165 kb on - strandat 2208.314 kb on + strand, within LRK53_RS09835at 2208.314 kb on + strand, within LRK53_RS09835at 2208.315 kb on - strand, within LRK53_RS09835at 2208.315 kb on - strand, within LRK53_RS09835at 2208.389 kb on + strand, within LRK53_RS09835at 2208.389 kb on + strand, within LRK53_RS09835at 2208.390 kb on - strand, within LRK53_RS09835at 2208.419 kb on + strand, within LRK53_RS09835at 2208.458 kb on - strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.609 kb on + strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.610 kb on - strand, within LRK53_RS09835at 2208.696 kb on + strand, within LRK53_RS09835at 2208.697 kb on - strand, within LRK53_RS09835at 2208.704 kb on + strand, within LRK53_RS09835at 2208.704 kb on + strand, within LRK53_RS09835at 2208.704 kb on + strand, within LRK53_RS09835at 2208.704 kb on + strand, within LRK53_RS09835at 2208.704 kb on + strand, within LRK53_RS09835at 2208.705 kb on - strand, within LRK53_RS09835at 2208.705 kb on - strand, within LRK53_RS09835at 2208.705 kb on - strand, within LRK53_RS09835at 2208.705 kb on - strand, within LRK53_RS09835at 2208.705 kb on - strand, within LRK53_RS09835at 2208.915 kb on + strand, within LRK53_RS09835at 2208.915 kb on + strand, within LRK53_RS09835at 2208.915 kb on + strand, within LRK53_RS09835at 2208.915 kb on + strand, within LRK53_RS09835at 2208.916 kb on - strand, within LRK53_RS09835at 2208.916 kb on - strand, within LRK53_RS09835

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,206,190 + LRK53_RS09825 0.50 -0.3
2,206,392 - LRK53_RS09825 0.60 +0.4
2,206,392 - LRK53_RS09825 0.60 +2.4
2,206,800 - LRK53_RS09825 0.82 -0.3
2,206,960 - LRK53_RS09825 0.90 -0.3
2,207,039 + +2.0
2,207,039 + +0.3
2,207,039 + -0.9
2,207,039 + -1.8
2,207,039 + -1.1
2,207,039 + -0.3
2,207,039 + -0.5
2,207,040 - -0.8
2,207,040 - +0.8
2,207,280 + LRK53_RS09830 0.13 +2.2
2,207,281 - LRK53_RS09830 0.13 +1.9
2,207,281 - LRK53_RS09830 0.13 +0.4
2,207,281 - LRK53_RS09830 0.13 +3.4
2,207,281 - LRK53_RS09830 0.13 -1.6
2,207,281 - LRK53_RS09830 0.13 +2.0
2,207,281 - LRK53_RS09830 0.13 +1.0
2,207,302 - LRK53_RS09830 0.15 +0.3
2,207,302 - LRK53_RS09830 0.15 -2.2
2,207,407 + LRK53_RS09830 0.27 -0.4
2,207,407 + LRK53_RS09830 0.27 -0.1
2,207,407 + LRK53_RS09830 0.27 -0.2
2,207,407 + LRK53_RS09830 0.27 +0.1
2,207,408 - LRK53_RS09830 0.27 -0.4
2,207,574 - LRK53_RS09830 0.45 -0.2
2,208,164 + +0.5
2,208,165 - -0.7
2,208,165 - -0.1
2,208,165 - +0.5
2,208,314 + LRK53_RS09835 0.13 -0.3
2,208,314 + LRK53_RS09835 0.13 -0.8
2,208,315 - LRK53_RS09835 0.13 -1.4
2,208,315 - LRK53_RS09835 0.13 -1.1
2,208,389 + LRK53_RS09835 0.17 -0.9
2,208,389 + LRK53_RS09835 0.17 +0.8
2,208,390 - LRK53_RS09835 0.17 -2.1
2,208,419 + LRK53_RS09835 0.19 +0.9
2,208,458 - LRK53_RS09835 0.21 -0.2
2,208,609 + LRK53_RS09835 0.29 +0.5
2,208,609 + LRK53_RS09835 0.29 +1.3
2,208,609 + LRK53_RS09835 0.29 -2.1
2,208,609 + LRK53_RS09835 0.29 -0.6
2,208,609 + LRK53_RS09835 0.29 -0.5
2,208,609 + LRK53_RS09835 0.29 -2.5
2,208,609 + LRK53_RS09835 0.29 -1.1
2,208,609 + LRK53_RS09835 0.29 -1.9
2,208,609 + LRK53_RS09835 0.29 -0.1
2,208,609 + LRK53_RS09835 0.29 -0.2
2,208,609 + LRK53_RS09835 0.29 -1.6
2,208,609 + LRK53_RS09835 0.29 -1.1
2,208,609 + LRK53_RS09835 0.29 +0.1
2,208,609 + LRK53_RS09835 0.29 -0.0
2,208,609 + LRK53_RS09835 0.29 -2.3
2,208,609 + LRK53_RS09835 0.29 +2.4
2,208,609 + LRK53_RS09835 0.29 -0.1
2,208,609 + LRK53_RS09835 0.29 -0.6
2,208,609 + LRK53_RS09835 0.29 -0.1
2,208,610 - LRK53_RS09835 0.29 -1.3
2,208,610 - LRK53_RS09835 0.29 -0.4
2,208,610 - LRK53_RS09835 0.29 -0.6
2,208,610 - LRK53_RS09835 0.29 -0.7
2,208,610 - LRK53_RS09835 0.29 -1.9
2,208,610 - LRK53_RS09835 0.29 -0.0
2,208,610 - LRK53_RS09835 0.29 +1.4
2,208,610 - LRK53_RS09835 0.29 -0.5
2,208,610 - LRK53_RS09835 0.29 -1.6
2,208,610 - LRK53_RS09835 0.29 +0.2
2,208,610 - LRK53_RS09835 0.29 -0.4
2,208,610 - LRK53_RS09835 0.29 -1.9
2,208,610 - LRK53_RS09835 0.29 -2.9
2,208,610 - LRK53_RS09835 0.29 -1.4
2,208,610 - LRK53_RS09835 0.29 +0.8
2,208,610 - LRK53_RS09835 0.29 -0.2
2,208,610 - LRK53_RS09835 0.29 -1.7
2,208,610 - LRK53_RS09835 0.29 +1.4
2,208,610 - LRK53_RS09835 0.29 -0.1
2,208,610 - LRK53_RS09835 0.29 -1.7
2,208,610 - LRK53_RS09835 0.29 -0.9
2,208,610 - LRK53_RS09835 0.29 -0.1
2,208,610 - LRK53_RS09835 0.29 -0.4
2,208,610 - LRK53_RS09835 0.29 +0.5
2,208,610 - LRK53_RS09835 0.29 +0.4
2,208,610 - LRK53_RS09835 0.29 -0.2
2,208,610 - LRK53_RS09835 0.29 -0.9
2,208,610 - LRK53_RS09835 0.29 +0.1
2,208,610 - LRK53_RS09835 0.29 -0.3
2,208,610 - LRK53_RS09835 0.29 -0.0
2,208,610 - LRK53_RS09835 0.29 +1.2
2,208,610 - LRK53_RS09835 0.29 -1.7
2,208,610 - LRK53_RS09835 0.29 +0.1
2,208,610 - LRK53_RS09835 0.29 -0.5
2,208,610 - LRK53_RS09835 0.29 -0.6
2,208,610 - LRK53_RS09835 0.29 -1.8
2,208,610 - LRK53_RS09835 0.29 -0.1
2,208,610 - LRK53_RS09835 0.29 -0.8
2,208,696 + LRK53_RS09835 0.34 -0.2
2,208,697 - LRK53_RS09835 0.34 +1.1
2,208,704 + LRK53_RS09835 0.35 +1.5
2,208,704 + LRK53_RS09835 0.35 -0.8
2,208,704 + LRK53_RS09835 0.35 +0.1
2,208,704 + LRK53_RS09835 0.35 -0.7
2,208,704 + LRK53_RS09835 0.35 -0.3
2,208,705 - LRK53_RS09835 0.35 -2.6
2,208,705 - LRK53_RS09835 0.35 -0.1
2,208,705 - LRK53_RS09835 0.35 -0.2
2,208,705 - LRK53_RS09835 0.35 +0.1
2,208,705 - LRK53_RS09835 0.35 -1.8
2,208,915 + LRK53_RS09835 0.46 -0.1
2,208,915 + LRK53_RS09835 0.46 -0.3
2,208,915 + LRK53_RS09835 0.46 -1.0
2,208,915 + LRK53_RS09835 0.46 -1.0
2,208,916 - LRK53_RS09835 0.46 -0.6
2,208,916 - LRK53_RS09835 0.46 -0.3

Or see this region's nucleotide sequence