Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09770 and LRK53_RS09775 are separated by 72 nucleotides LRK53_RS09775 and LRK53_RS09780 are separated by 52 nucleotides LRK53_RS09780 and LRK53_RS09785 are separated by 128 nucleotides LRK53_RS09785 and LRK53_RS09790 are separated by 84 nucleotides LRK53_RS09790 and LRK53_RS09795 are separated by 302 nucleotides
LRK53_RS09770: LRK53_RS09770 - excinuclease ABC subunit UvrC, at 2,197,215 to 2,199,056
_RS09770
LRK53_RS09775: LRK53_RS09775 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,199,129 to 2,199,740
_RS09775
LRK53_RS09780: LRK53_RS09780 - tRNA-Gly, at 2,199,793 to 2,199,868
_RS09780
LRK53_RS09785: LRK53_RS09785 - tRNA-Gly, at 2,199,997 to 2,200,072
_RS09785
LRK53_RS09790: LRK53_RS09790 - tRNA-Cys, at 2,200,157 to 2,200,230
_RS09790
LRK53_RS09795: LRK53_RS09795 - HU family DNA-binding protein, at 2,200,533 to 2,200,913
_RS09795
Position (kb)
2199
2200 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2198.905 kb on + strand at 2198.906 kb on - strand at 2198.906 kb on - strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.036 kb on + strand at 2199.037 kb on - strand at 2199.037 kb on - strand at 2199.037 kb on - strand at 2199.771 kb on + strand at 2199.771 kb on + strand at 2199.800 kb on + strand at 2199.800 kb on + strand at 2199.800 kb on + strand at 2199.800 kb on + strand at 2199.800 kb on + strand at 2199.800 kb on + strand at 2199.812 kb on + strand, within LRK53_RS09780 at 2199.812 kb on + strand, within LRK53_RS09780 at 2199.908 kb on + strand at 2199.954 kb on + strand at 2199.978 kb on + strand at 2199.978 kb on + strand at 2200.113 kb on + strand at 2200.113 kb on + strand at 2200.398 kb on - strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.496 kb on + strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.497 kb on - strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.514 kb on + strand at 2200.515 kb on - strand at 2200.515 kb on - strand at 2200.515 kb on - strand at 2200.515 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,198,905 + -0.6 2,198,906 - -1.9 2,198,906 - +0.3 2,199,036 + +0.6 2,199,036 + -0.1 2,199,036 + -1.3 2,199,036 + -0.2 2,199,036 + +0.0 2,199,036 + -1.6 2,199,036 + -0.8 2,199,036 + -0.6 2,199,037 - -1.5 2,199,037 - -0.9 2,199,037 - -3.1 2,199,771 + +0.8 2,199,771 + -2.0 2,199,800 + +0.1 2,199,800 + -0.9 2,199,800 + -0.6 2,199,800 + +0.1 2,199,800 + +0.4 2,199,800 + -0.3 2,199,812 + LRK53_RS09780 0.25 +0.9 2,199,812 + LRK53_RS09780 0.25 +0.3 2,199,908 + -1.0 2,199,954 + +0.2 2,199,978 + -2.6 2,199,978 + -0.3 2,200,113 + -0.6 2,200,113 + +0.6 2,200,398 - +0.2 2,200,496 + -1.5 2,200,496 + +0.7 2,200,496 + -0.1 2,200,496 + -1.1 2,200,496 + -1.3 2,200,496 + +0.5 2,200,496 + -0.7 2,200,496 + +0.8 2,200,496 + -0.4 2,200,497 - -1.0 2,200,497 - +1.3 2,200,497 - +0.4 2,200,497 - -1.2 2,200,497 - -1.4 2,200,497 - -0.2 2,200,497 - -1.7 2,200,497 - -0.8 2,200,514 + +0.8 2,200,514 + -0.5 2,200,514 + -0.1 2,200,514 + -0.4 2,200,514 + +0.5 2,200,514 + +0.5 2,200,514 + -1.1 2,200,514 + -0.3 2,200,515 - +0.2 2,200,515 - -0.2 2,200,515 - -0.5 2,200,515 - +0.5
Or see this region's nucleotide sequence