Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09780

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09770 and LRK53_RS09775 are separated by 72 nucleotidesLRK53_RS09775 and LRK53_RS09780 are separated by 52 nucleotidesLRK53_RS09780 and LRK53_RS09785 are separated by 128 nucleotidesLRK53_RS09785 and LRK53_RS09790 are separated by 84 nucleotidesLRK53_RS09790 and LRK53_RS09795 are separated by 302 nucleotides LRK53_RS09770: LRK53_RS09770 - excinuclease ABC subunit UvrC, at 2,197,215 to 2,199,056 _RS09770 LRK53_RS09775: LRK53_RS09775 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 2,199,129 to 2,199,740 _RS09775 LRK53_RS09780: LRK53_RS09780 - tRNA-Gly, at 2,199,793 to 2,199,868 _RS09780 LRK53_RS09785: LRK53_RS09785 - tRNA-Gly, at 2,199,997 to 2,200,072 _RS09785 LRK53_RS09790: LRK53_RS09790 - tRNA-Cys, at 2,200,157 to 2,200,230 _RS09790 LRK53_RS09795: LRK53_RS09795 - HU family DNA-binding protein, at 2,200,533 to 2,200,913 _RS09795 Position (kb) 2199 2200Strain fitness (log2 ratio) -3 -2 -1 0 1at 2198.905 kb on + strandat 2198.906 kb on - strandat 2198.906 kb on - strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.036 kb on + strandat 2199.037 kb on - strandat 2199.037 kb on - strandat 2199.037 kb on - strandat 2199.771 kb on + strandat 2199.771 kb on + strandat 2199.800 kb on + strandat 2199.800 kb on + strandat 2199.800 kb on + strandat 2199.800 kb on + strandat 2199.800 kb on + strandat 2199.800 kb on + strandat 2199.812 kb on + strand, within LRK53_RS09780at 2199.812 kb on + strand, within LRK53_RS09780at 2199.908 kb on + strandat 2199.954 kb on + strandat 2199.978 kb on + strandat 2199.978 kb on + strandat 2200.113 kb on + strandat 2200.113 kb on + strandat 2200.398 kb on - strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.496 kb on + strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.497 kb on - strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.514 kb on + strandat 2200.515 kb on - strandat 2200.515 kb on - strandat 2200.515 kb on - strandat 2200.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,198,905 + -0.6
2,198,906 - -1.9
2,198,906 - +0.3
2,199,036 + +0.6
2,199,036 + -0.1
2,199,036 + -1.3
2,199,036 + -0.2
2,199,036 + +0.0
2,199,036 + -1.6
2,199,036 + -0.8
2,199,036 + -0.6
2,199,037 - -1.5
2,199,037 - -0.9
2,199,037 - -3.1
2,199,771 + +0.8
2,199,771 + -2.0
2,199,800 + +0.1
2,199,800 + -0.9
2,199,800 + -0.6
2,199,800 + +0.1
2,199,800 + +0.4
2,199,800 + -0.3
2,199,812 + LRK53_RS09780 0.25 +0.9
2,199,812 + LRK53_RS09780 0.25 +0.3
2,199,908 + -1.0
2,199,954 + +0.2
2,199,978 + -2.6
2,199,978 + -0.3
2,200,113 + -0.6
2,200,113 + +0.6
2,200,398 - +0.2
2,200,496 + -1.5
2,200,496 + +0.7
2,200,496 + -0.1
2,200,496 + -1.1
2,200,496 + -1.3
2,200,496 + +0.5
2,200,496 + -0.7
2,200,496 + +0.8
2,200,496 + -0.4
2,200,497 - -1.0
2,200,497 - +1.3
2,200,497 - +0.4
2,200,497 - -1.2
2,200,497 - -1.4
2,200,497 - -0.2
2,200,497 - -1.7
2,200,497 - -0.8
2,200,514 + +0.8
2,200,514 + -0.5
2,200,514 + -0.1
2,200,514 + -0.4
2,200,514 + +0.5
2,200,514 + +0.5
2,200,514 + -1.1
2,200,514 + -0.3
2,200,515 - +0.2
2,200,515 - -0.2
2,200,515 - -0.5
2,200,515 - +0.5

Or see this region's nucleotide sequence