Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09515 and LRK53_RS09520 are separated by 167 nucleotides LRK53_RS09520 and LRK53_RS09525 are separated by 132 nucleotides LRK53_RS09525 and LRK53_RS09530 are separated by 57 nucleotides
LRK53_RS09515: LRK53_RS09515 - S46 family peptidase, at 2,140,657 to 2,142,819
_RS09515
LRK53_RS09520: LRK53_RS09520 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 2,142,987 to 2,143,955
_RS09520
LRK53_RS09525: LRK53_RS09525 - RNA chaperone Hfq, at 2,144,088 to 2,144,384
_RS09525
LRK53_RS09530: LRK53_RS09530 - GTPase HflX, at 2,144,442 to 2,145,743
_RS09530
Position (kb)
2142
2143
2144 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2142.016 kb on + strand, within LRK53_RS09515 at 2142.016 kb on + strand, within LRK53_RS09515 at 2142.016 kb on + strand, within LRK53_RS09515 at 2142.016 kb on + strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.017 kb on - strand, within LRK53_RS09515 at 2142.031 kb on + strand, within LRK53_RS09515 at 2142.031 kb on + strand, within LRK53_RS09515 at 2142.032 kb on - strand, within LRK53_RS09515 at 2142.032 kb on - strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.130 kb on + strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.131 kb on - strand, within LRK53_RS09515 at 2142.313 kb on + strand, within LRK53_RS09515 at 2142.313 kb on + strand, within LRK53_RS09515 at 2142.313 kb on + strand, within LRK53_RS09515 at 2142.313 kb on + strand, within LRK53_RS09515 at 2142.314 kb on - strand, within LRK53_RS09515 at 2142.314 kb on - strand, within LRK53_RS09515 at 2142.314 kb on - strand, within LRK53_RS09515 at 2142.314 kb on - strand, within LRK53_RS09515 at 2142.436 kb on + strand, within LRK53_RS09515 at 2142.437 kb on - strand, within LRK53_RS09515 at 2142.437 kb on - strand, within LRK53_RS09515 at 2142.437 kb on - strand, within LRK53_RS09515 at 2142.437 kb on - strand, within LRK53_RS09515 at 2142.547 kb on + strand, within LRK53_RS09515 at 2142.548 kb on - strand, within LRK53_RS09515 at 2142.745 kb on + strand at 2142.745 kb on + strand at 2142.745 kb on + strand at 2142.745 kb on + strand at 2142.745 kb on + strand at 2142.745 kb on + strand at 2142.746 kb on - strand at 2142.746 kb on - strand at 2142.746 kb on - strand at 2142.746 kb on - strand at 2142.746 kb on - strand at 2142.817 kb on + strand at 2142.817 kb on + strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.818 kb on - strand at 2142.837 kb on - strand at 2142.837 kb on - strand at 2142.837 kb on - strand at 2142.974 kb on + strand at 2142.974 kb on + strand at 2142.974 kb on + strand at 2142.974 kb on + strand at 2142.974 kb on + strand at 2142.974 kb on + strand at 2143.415 kb on + strand, within LRK53_RS09520 at 2143.416 kb on - strand, within LRK53_RS09520 at 2143.416 kb on - strand, within LRK53_RS09520 at 2143.909 kb on + strand at 2143.909 kb on + strand at 2143.909 kb on + strand at 2143.909 kb on + strand at 2143.909 kb on + strand at 2143.997 kb on + strand at 2143.997 kb on + strand at 2144.011 kb on + strand at 2144.011 kb on + strand at 2144.012 kb on - strand at 2144.012 kb on - strand at 2144.161 kb on - strand, within LRK53_RS09525 at 2144.189 kb on + strand, within LRK53_RS09525 at 2144.290 kb on + strand, within LRK53_RS09525 at 2144.293 kb on - strand, within LRK53_RS09525 at 2144.385 kb on + strand at 2144.385 kb on + strand at 2144.385 kb on + strand at 2144.385 kb on + strand at 2144.385 kb on + strand at 2144.386 kb on - strand at 2144.386 kb on - strand at 2144.386 kb on - strand at 2144.493 kb on - strand at 2144.493 kb on - strand at 2144.510 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.566 kb on + strand at 2144.567 kb on - strand at 2144.567 kb on - strand at 2144.610 kb on + strand, within LRK53_RS09530 at 2144.610 kb on + strand, within LRK53_RS09530 at 2144.611 kb on - strand, within LRK53_RS09530 at 2144.611 kb on - strand, within LRK53_RS09530 at 2144.611 kb on - strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.613 kb on + strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.614 kb on - strand, within LRK53_RS09530 at 2144.854 kb on + strand, within LRK53_RS09530
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,142,016 + LRK53_RS09515 0.63 -0.2 2,142,016 + LRK53_RS09515 0.63 -1.0 2,142,016 + LRK53_RS09515 0.63 -0.7 2,142,016 + LRK53_RS09515 0.63 +1.0 2,142,017 - LRK53_RS09515 0.63 +0.6 2,142,017 - LRK53_RS09515 0.63 +1.2 2,142,017 - LRK53_RS09515 0.63 +0.9 2,142,017 - LRK53_RS09515 0.63 +0.1 2,142,017 - LRK53_RS09515 0.63 +0.2 2,142,017 - LRK53_RS09515 0.63 -0.0 2,142,031 + LRK53_RS09515 0.64 +0.7 2,142,031 + LRK53_RS09515 0.64 +0.1 2,142,032 - LRK53_RS09515 0.64 +0.0 2,142,032 - LRK53_RS09515 0.64 +0.8 2,142,130 + LRK53_RS09515 0.68 -0.7 2,142,130 + LRK53_RS09515 0.68 +0.6 2,142,130 + LRK53_RS09515 0.68 -0.5 2,142,130 + LRK53_RS09515 0.68 -1.6 2,142,130 + LRK53_RS09515 0.68 -0.9 2,142,130 + LRK53_RS09515 0.68 -3.4 2,142,131 - LRK53_RS09515 0.68 +1.1 2,142,131 - LRK53_RS09515 0.68 +0.4 2,142,131 - LRK53_RS09515 0.68 -1.3 2,142,131 - LRK53_RS09515 0.68 -0.9 2,142,131 - LRK53_RS09515 0.68 +0.1 2,142,131 - LRK53_RS09515 0.68 -0.5 2,142,131 - LRK53_RS09515 0.68 -1.3 2,142,313 + LRK53_RS09515 0.77 -0.1 2,142,313 + LRK53_RS09515 0.77 -1.5 2,142,313 + LRK53_RS09515 0.77 -0.3 2,142,313 + LRK53_RS09515 0.77 -0.3 2,142,314 - LRK53_RS09515 0.77 -0.8 2,142,314 - LRK53_RS09515 0.77 +0.4 2,142,314 - LRK53_RS09515 0.77 -0.2 2,142,314 - LRK53_RS09515 0.77 -0.5 2,142,436 + LRK53_RS09515 0.82 +0.4 2,142,437 - LRK53_RS09515 0.82 +1.1 2,142,437 - LRK53_RS09515 0.82 -0.4 2,142,437 - LRK53_RS09515 0.82 -0.2 2,142,437 - LRK53_RS09515 0.82 -0.3 2,142,547 + LRK53_RS09515 0.87 +0.6 2,142,548 - LRK53_RS09515 0.87 +0.4 2,142,745 + -0.6 2,142,745 + -1.2 2,142,745 + +0.4 2,142,745 + +0.2 2,142,745 + -1.2 2,142,745 + -0.4 2,142,746 - -1.5 2,142,746 - +1.8 2,142,746 - +0.2 2,142,746 - -0.2 2,142,746 - -1.8 2,142,817 + -2.1 2,142,817 + -1.7 2,142,818 - -0.9 2,142,818 - +1.0 2,142,818 - -0.9 2,142,818 - -0.3 2,142,818 - -1.1 2,142,818 - -1.2 2,142,818 - -0.4 2,142,818 - +0.9 2,142,818 - -0.6 2,142,818 - +2.8 2,142,818 - -2.4 2,142,818 - -0.0 2,142,818 - -1.6 2,142,837 - +0.8 2,142,837 - +2.0 2,142,837 - -1.7 2,142,974 + -1.4 2,142,974 + +0.5 2,142,974 + -0.9 2,142,974 + +0.4 2,142,974 + -0.6 2,142,974 + -0.5 2,143,415 + LRK53_RS09520 0.44 -0.2 2,143,416 - LRK53_RS09520 0.44 -1.0 2,143,416 - LRK53_RS09520 0.44 +2.3 2,143,909 + -1.7 2,143,909 + -0.5 2,143,909 + -2.1 2,143,909 + +1.4 2,143,909 + -1.6 2,143,997 + -1.6 2,143,997 + -2.7 2,144,011 + +1.5 2,144,011 + +0.9 2,144,012 - -0.0 2,144,012 - -1.3 2,144,161 - LRK53_RS09525 0.25 -0.6 2,144,189 + LRK53_RS09525 0.34 +2.0 2,144,290 + LRK53_RS09525 0.68 -0.2 2,144,293 - LRK53_RS09525 0.69 +1.6 2,144,385 + -1.0 2,144,385 + -1.3 2,144,385 + +0.8 2,144,385 + +2.5 2,144,385 + +0.8 2,144,386 - +0.2 2,144,386 - -0.7 2,144,386 - -3.3 2,144,493 - +0.9 2,144,493 - -1.4 2,144,510 + -0.1 2,144,566 + +1.6 2,144,566 + -1.2 2,144,566 + -2.5 2,144,566 + +0.4 2,144,566 + +0.4 2,144,566 + +1.7 2,144,566 + -0.6 2,144,567 - +1.1 2,144,567 - -0.5 2,144,610 + LRK53_RS09530 0.13 -2.0 2,144,610 + LRK53_RS09530 0.13 +2.2 2,144,611 - LRK53_RS09530 0.13 +0.1 2,144,611 - LRK53_RS09530 0.13 +0.6 2,144,611 - LRK53_RS09530 0.13 -1.0 2,144,613 + LRK53_RS09530 0.13 +0.0 2,144,613 + LRK53_RS09530 0.13 -0.8 2,144,613 + LRK53_RS09530 0.13 -1.8 2,144,613 + LRK53_RS09530 0.13 +1.1 2,144,613 + LRK53_RS09530 0.13 +0.7 2,144,613 + LRK53_RS09530 0.13 -0.9 2,144,613 + LRK53_RS09530 0.13 +0.9 2,144,613 + LRK53_RS09530 0.13 -0.6 2,144,613 + LRK53_RS09530 0.13 +0.3 2,144,613 + LRK53_RS09530 0.13 -0.1 2,144,613 + LRK53_RS09530 0.13 -1.7 2,144,613 + LRK53_RS09530 0.13 +0.7 2,144,613 + LRK53_RS09530 0.13 +0.5 2,144,613 + LRK53_RS09530 0.13 -1.4 2,144,613 + LRK53_RS09530 0.13 -0.6 2,144,613 + LRK53_RS09530 0.13 +0.1 2,144,613 + LRK53_RS09530 0.13 -1.0 2,144,613 + LRK53_RS09530 0.13 -2.8 2,144,613 + LRK53_RS09530 0.13 -0.3 2,144,613 + LRK53_RS09530 0.13 +0.7 2,144,613 + LRK53_RS09530 0.13 -0.9 2,144,613 + LRK53_RS09530 0.13 -0.9 2,144,613 + LRK53_RS09530 0.13 +0.6 2,144,613 + LRK53_RS09530 0.13 -0.5 2,144,613 + LRK53_RS09530 0.13 +0.9 2,144,614 - LRK53_RS09530 0.13 +0.5 2,144,614 - LRK53_RS09530 0.13 -0.4 2,144,614 - LRK53_RS09530 0.13 -0.6 2,144,614 - LRK53_RS09530 0.13 +2.7 2,144,614 - LRK53_RS09530 0.13 +0.1 2,144,614 - LRK53_RS09530 0.13 +0.2 2,144,614 - LRK53_RS09530 0.13 -1.6 2,144,614 - LRK53_RS09530 0.13 +1.7 2,144,614 - LRK53_RS09530 0.13 +1.4 2,144,854 + LRK53_RS09530 0.32 -0.8
Or see this region's nucleotide sequence