Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09520

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09515 and LRK53_RS09520 are separated by 167 nucleotidesLRK53_RS09520 and LRK53_RS09525 are separated by 132 nucleotidesLRK53_RS09525 and LRK53_RS09530 are separated by 57 nucleotides LRK53_RS09515: LRK53_RS09515 - S46 family peptidase, at 2,140,657 to 2,142,819 _RS09515 LRK53_RS09520: LRK53_RS09520 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 2,142,987 to 2,143,955 _RS09520 LRK53_RS09525: LRK53_RS09525 - RNA chaperone Hfq, at 2,144,088 to 2,144,384 _RS09525 LRK53_RS09530: LRK53_RS09530 - GTPase HflX, at 2,144,442 to 2,145,743 _RS09530 Position (kb) 2142 2143 2144Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2142.016 kb on + strand, within LRK53_RS09515at 2142.016 kb on + strand, within LRK53_RS09515at 2142.016 kb on + strand, within LRK53_RS09515at 2142.016 kb on + strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.017 kb on - strand, within LRK53_RS09515at 2142.031 kb on + strand, within LRK53_RS09515at 2142.031 kb on + strand, within LRK53_RS09515at 2142.032 kb on - strand, within LRK53_RS09515at 2142.032 kb on - strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.130 kb on + strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.131 kb on - strand, within LRK53_RS09515at 2142.313 kb on + strand, within LRK53_RS09515at 2142.313 kb on + strand, within LRK53_RS09515at 2142.313 kb on + strand, within LRK53_RS09515at 2142.313 kb on + strand, within LRK53_RS09515at 2142.314 kb on - strand, within LRK53_RS09515at 2142.314 kb on - strand, within LRK53_RS09515at 2142.314 kb on - strand, within LRK53_RS09515at 2142.314 kb on - strand, within LRK53_RS09515at 2142.436 kb on + strand, within LRK53_RS09515at 2142.437 kb on - strand, within LRK53_RS09515at 2142.437 kb on - strand, within LRK53_RS09515at 2142.437 kb on - strand, within LRK53_RS09515at 2142.437 kb on - strand, within LRK53_RS09515at 2142.547 kb on + strand, within LRK53_RS09515at 2142.548 kb on - strand, within LRK53_RS09515at 2142.745 kb on + strandat 2142.745 kb on + strandat 2142.745 kb on + strandat 2142.745 kb on + strandat 2142.745 kb on + strandat 2142.745 kb on + strandat 2142.746 kb on - strandat 2142.746 kb on - strandat 2142.746 kb on - strandat 2142.746 kb on - strandat 2142.746 kb on - strandat 2142.817 kb on + strandat 2142.817 kb on + strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.818 kb on - strandat 2142.837 kb on - strandat 2142.837 kb on - strandat 2142.837 kb on - strandat 2142.974 kb on + strandat 2142.974 kb on + strandat 2142.974 kb on + strandat 2142.974 kb on + strandat 2142.974 kb on + strandat 2142.974 kb on + strandat 2143.415 kb on + strand, within LRK53_RS09520at 2143.416 kb on - strand, within LRK53_RS09520at 2143.416 kb on - strand, within LRK53_RS09520at 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.909 kb on + strandat 2143.997 kb on + strandat 2143.997 kb on + strandat 2144.011 kb on + strandat 2144.011 kb on + strandat 2144.012 kb on - strandat 2144.012 kb on - strandat 2144.161 kb on - strand, within LRK53_RS09525at 2144.189 kb on + strand, within LRK53_RS09525at 2144.290 kb on + strand, within LRK53_RS09525at 2144.293 kb on - strand, within LRK53_RS09525at 2144.385 kb on + strandat 2144.385 kb on + strandat 2144.385 kb on + strandat 2144.385 kb on + strandat 2144.385 kb on + strandat 2144.386 kb on - strandat 2144.386 kb on - strandat 2144.386 kb on - strandat 2144.493 kb on - strandat 2144.493 kb on - strandat 2144.510 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.566 kb on + strandat 2144.567 kb on - strandat 2144.567 kb on - strandat 2144.610 kb on + strand, within LRK53_RS09530at 2144.610 kb on + strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.611 kb on - strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.613 kb on + strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.614 kb on - strand, within LRK53_RS09530at 2144.854 kb on + strand, within LRK53_RS09530

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,142,016 + LRK53_RS09515 0.63 -0.2
2,142,016 + LRK53_RS09515 0.63 -1.0
2,142,016 + LRK53_RS09515 0.63 -0.7
2,142,016 + LRK53_RS09515 0.63 +1.0
2,142,017 - LRK53_RS09515 0.63 +0.6
2,142,017 - LRK53_RS09515 0.63 +1.2
2,142,017 - LRK53_RS09515 0.63 +0.9
2,142,017 - LRK53_RS09515 0.63 +0.1
2,142,017 - LRK53_RS09515 0.63 +0.2
2,142,017 - LRK53_RS09515 0.63 -0.0
2,142,031 + LRK53_RS09515 0.64 +0.7
2,142,031 + LRK53_RS09515 0.64 +0.1
2,142,032 - LRK53_RS09515 0.64 +0.0
2,142,032 - LRK53_RS09515 0.64 +0.8
2,142,130 + LRK53_RS09515 0.68 -0.7
2,142,130 + LRK53_RS09515 0.68 +0.6
2,142,130 + LRK53_RS09515 0.68 -0.5
2,142,130 + LRK53_RS09515 0.68 -1.6
2,142,130 + LRK53_RS09515 0.68 -0.9
2,142,130 + LRK53_RS09515 0.68 -3.4
2,142,131 - LRK53_RS09515 0.68 +1.1
2,142,131 - LRK53_RS09515 0.68 +0.4
2,142,131 - LRK53_RS09515 0.68 -1.3
2,142,131 - LRK53_RS09515 0.68 -0.9
2,142,131 - LRK53_RS09515 0.68 +0.1
2,142,131 - LRK53_RS09515 0.68 -0.5
2,142,131 - LRK53_RS09515 0.68 -1.3
2,142,313 + LRK53_RS09515 0.77 -0.1
2,142,313 + LRK53_RS09515 0.77 -1.5
2,142,313 + LRK53_RS09515 0.77 -0.3
2,142,313 + LRK53_RS09515 0.77 -0.3
2,142,314 - LRK53_RS09515 0.77 -0.8
2,142,314 - LRK53_RS09515 0.77 +0.4
2,142,314 - LRK53_RS09515 0.77 -0.2
2,142,314 - LRK53_RS09515 0.77 -0.5
2,142,436 + LRK53_RS09515 0.82 +0.4
2,142,437 - LRK53_RS09515 0.82 +1.1
2,142,437 - LRK53_RS09515 0.82 -0.4
2,142,437 - LRK53_RS09515 0.82 -0.2
2,142,437 - LRK53_RS09515 0.82 -0.3
2,142,547 + LRK53_RS09515 0.87 +0.6
2,142,548 - LRK53_RS09515 0.87 +0.4
2,142,745 + -0.6
2,142,745 + -1.2
2,142,745 + +0.4
2,142,745 + +0.2
2,142,745 + -1.2
2,142,745 + -0.4
2,142,746 - -1.5
2,142,746 - +1.8
2,142,746 - +0.2
2,142,746 - -0.2
2,142,746 - -1.8
2,142,817 + -2.1
2,142,817 + -1.7
2,142,818 - -0.9
2,142,818 - +1.0
2,142,818 - -0.9
2,142,818 - -0.3
2,142,818 - -1.1
2,142,818 - -1.2
2,142,818 - -0.4
2,142,818 - +0.9
2,142,818 - -0.6
2,142,818 - +2.8
2,142,818 - -2.4
2,142,818 - -0.0
2,142,818 - -1.6
2,142,837 - +0.8
2,142,837 - +2.0
2,142,837 - -1.7
2,142,974 + -1.4
2,142,974 + +0.5
2,142,974 + -0.9
2,142,974 + +0.4
2,142,974 + -0.6
2,142,974 + -0.5
2,143,415 + LRK53_RS09520 0.44 -0.2
2,143,416 - LRK53_RS09520 0.44 -1.0
2,143,416 - LRK53_RS09520 0.44 +2.3
2,143,909 + -1.7
2,143,909 + -0.5
2,143,909 + -2.1
2,143,909 + +1.4
2,143,909 + -1.6
2,143,997 + -1.6
2,143,997 + -2.7
2,144,011 + +1.5
2,144,011 + +0.9
2,144,012 - -0.0
2,144,012 - -1.3
2,144,161 - LRK53_RS09525 0.25 -0.6
2,144,189 + LRK53_RS09525 0.34 +2.0
2,144,290 + LRK53_RS09525 0.68 -0.2
2,144,293 - LRK53_RS09525 0.69 +1.6
2,144,385 + -1.0
2,144,385 + -1.3
2,144,385 + +0.8
2,144,385 + +2.5
2,144,385 + +0.8
2,144,386 - +0.2
2,144,386 - -0.7
2,144,386 - -3.3
2,144,493 - +0.9
2,144,493 - -1.4
2,144,510 + -0.1
2,144,566 + +1.6
2,144,566 + -1.2
2,144,566 + -2.5
2,144,566 + +0.4
2,144,566 + +0.4
2,144,566 + +1.7
2,144,566 + -0.6
2,144,567 - +1.1
2,144,567 - -0.5
2,144,610 + LRK53_RS09530 0.13 -2.0
2,144,610 + LRK53_RS09530 0.13 +2.2
2,144,611 - LRK53_RS09530 0.13 +0.1
2,144,611 - LRK53_RS09530 0.13 +0.6
2,144,611 - LRK53_RS09530 0.13 -1.0
2,144,613 + LRK53_RS09530 0.13 +0.0
2,144,613 + LRK53_RS09530 0.13 -0.8
2,144,613 + LRK53_RS09530 0.13 -1.8
2,144,613 + LRK53_RS09530 0.13 +1.1
2,144,613 + LRK53_RS09530 0.13 +0.7
2,144,613 + LRK53_RS09530 0.13 -0.9
2,144,613 + LRK53_RS09530 0.13 +0.9
2,144,613 + LRK53_RS09530 0.13 -0.6
2,144,613 + LRK53_RS09530 0.13 +0.3
2,144,613 + LRK53_RS09530 0.13 -0.1
2,144,613 + LRK53_RS09530 0.13 -1.7
2,144,613 + LRK53_RS09530 0.13 +0.7
2,144,613 + LRK53_RS09530 0.13 +0.5
2,144,613 + LRK53_RS09530 0.13 -1.4
2,144,613 + LRK53_RS09530 0.13 -0.6
2,144,613 + LRK53_RS09530 0.13 +0.1
2,144,613 + LRK53_RS09530 0.13 -1.0
2,144,613 + LRK53_RS09530 0.13 -2.8
2,144,613 + LRK53_RS09530 0.13 -0.3
2,144,613 + LRK53_RS09530 0.13 +0.7
2,144,613 + LRK53_RS09530 0.13 -0.9
2,144,613 + LRK53_RS09530 0.13 -0.9
2,144,613 + LRK53_RS09530 0.13 +0.6
2,144,613 + LRK53_RS09530 0.13 -0.5
2,144,613 + LRK53_RS09530 0.13 +0.9
2,144,614 - LRK53_RS09530 0.13 +0.5
2,144,614 - LRK53_RS09530 0.13 -0.4
2,144,614 - LRK53_RS09530 0.13 -0.6
2,144,614 - LRK53_RS09530 0.13 +2.7
2,144,614 - LRK53_RS09530 0.13 +0.1
2,144,614 - LRK53_RS09530 0.13 +0.2
2,144,614 - LRK53_RS09530 0.13 -1.6
2,144,614 - LRK53_RS09530 0.13 +1.7
2,144,614 - LRK53_RS09530 0.13 +1.4
2,144,854 + LRK53_RS09530 0.32 -0.8

Or see this region's nucleotide sequence