Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09350

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09345 and LRK53_RS09350 are separated by 264 nucleotidesLRK53_RS09350 and LRK53_RS09355 are separated by 41 nucleotides LRK53_RS09345: LRK53_RS09345 - aconitate hydratase AcnA, at 2,086,466 to 2,089,216 _RS09345 LRK53_RS09350: LRK53_RS09350 - LysR family transcriptional regulator, at 2,089,481 to 2,090,431 _RS09350 LRK53_RS09355: LRK53_RS09355 - carbohydrate porin, at 2,090,473 to 2,091,798 _RS09355 Position (kb) 2089 2090 2091Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2089.687 kb on + strand, within LRK53_RS09350at 2089.826 kb on + strand, within LRK53_RS09350at 2089.826 kb on + strand, within LRK53_RS09350at 2089.827 kb on - strand, within LRK53_RS09350at 2090.306 kb on + strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.307 kb on - strand, within LRK53_RS09350at 2090.490 kb on + strandat 2090.490 kb on + strandat 2090.490 kb on + strandat 2090.490 kb on + strandat 2090.490 kb on + strandat 2090.490 kb on + strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.491 kb on - strandat 2090.531 kb on + strandat 2090.531 kb on + strandat 2090.531 kb on + strandat 2090.531 kb on + strandat 2090.531 kb on + strandat 2090.532 kb on - strandat 2090.532 kb on - strandat 2090.576 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.597 kb on + strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.598 kb on - strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.600 kb on + strandat 2090.601 kb on - strandat 2090.601 kb on - strandat 2090.601 kb on - strandat 2090.601 kb on - strandat 2090.601 kb on - strandat 2090.678 kb on + strand, within LRK53_RS09355at 2090.678 kb on + strand, within LRK53_RS09355at 2090.678 kb on + strand, within LRK53_RS09355at 2090.678 kb on + strand, within LRK53_RS09355at 2090.678 kb on + strand, within LRK53_RS09355at 2090.679 kb on - strand, within LRK53_RS09355at 2090.679 kb on - strand, within LRK53_RS09355at 2090.679 kb on - strand, within LRK53_RS09355at 2090.679 kb on - strand, within LRK53_RS09355at 2090.679 kb on - strand, within LRK53_RS09355at 2090.903 kb on + strand, within LRK53_RS09355at 2090.903 kb on + strand, within LRK53_RS09355at 2090.904 kb on - strand, within LRK53_RS09355at 2090.904 kb on - strand, within LRK53_RS09355at 2090.904 kb on - strand, within LRK53_RS09355at 2090.904 kb on - strand, within LRK53_RS09355at 2090.984 kb on + strand, within LRK53_RS09355at 2090.985 kb on - strand, within LRK53_RS09355at 2091.134 kb on + strand, within LRK53_RS09355at 2091.134 kb on + strand, within LRK53_RS09355at 2091.134 kb on + strand, within LRK53_RS09355at 2091.135 kb on - strand, within LRK53_RS09355at 2091.135 kb on - strand, within LRK53_RS09355at 2091.135 kb on - strand, within LRK53_RS09355at 2091.135 kb on - strand, within LRK53_RS09355at 2091.135 kb on - strand, within LRK53_RS09355at 2091.194 kb on + strand, within LRK53_RS09355at 2091.194 kb on + strand, within LRK53_RS09355at 2091.278 kb on + strand, within LRK53_RS09355

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,089,687 + LRK53_RS09350 0.22 -2.0
2,089,826 + LRK53_RS09350 0.36 +0.2
2,089,826 + LRK53_RS09350 0.36 -1.4
2,089,827 - LRK53_RS09350 0.36 -1.7
2,090,306 + LRK53_RS09350 0.87 -2.1
2,090,307 - LRK53_RS09350 0.87 -0.9
2,090,307 - LRK53_RS09350 0.87 -1.4
2,090,307 - LRK53_RS09350 0.87 +0.3
2,090,307 - LRK53_RS09350 0.87 -1.1
2,090,307 - LRK53_RS09350 0.87 -2.4
2,090,307 - LRK53_RS09350 0.87 -1.0
2,090,490 + +1.3
2,090,490 + -0.3
2,090,490 + -0.4
2,090,490 + -0.6
2,090,490 + -0.4
2,090,490 + -0.7
2,090,491 - -1.7
2,090,491 - +0.4
2,090,491 - +0.3
2,090,491 - +1.1
2,090,491 - -1.7
2,090,491 - +0.3
2,090,491 - -0.1
2,090,531 + -0.0
2,090,531 + -2.0
2,090,531 + +0.2
2,090,531 + -0.4
2,090,531 + -0.7
2,090,532 - +0.4
2,090,532 - -0.8
2,090,576 + -0.5
2,090,597 + +0.6
2,090,597 + +0.1
2,090,597 + -0.9
2,090,597 + +0.0
2,090,597 + -0.9
2,090,597 + +0.0
2,090,597 + -0.1
2,090,597 + +0.4
2,090,597 + -1.3
2,090,597 + +1.0
2,090,597 + -2.1
2,090,597 + -1.0
2,090,597 + +0.5
2,090,597 + -0.9
2,090,598 - +0.8
2,090,598 - -1.0
2,090,598 - +1.2
2,090,598 - -0.6
2,090,598 - +0.4
2,090,598 - -0.2
2,090,598 - -1.4
2,090,598 - -1.0
2,090,598 - -0.2
2,090,598 - -1.3
2,090,598 - +1.4
2,090,598 - -0.2
2,090,600 + +0.0
2,090,600 + -3.6
2,090,600 + +0.9
2,090,600 + -3.3
2,090,600 + -0.6
2,090,600 + -0.4
2,090,600 + +2.4
2,090,601 - +1.4
2,090,601 - +0.8
2,090,601 - -0.5
2,090,601 - -2.2
2,090,601 - +0.3
2,090,678 + LRK53_RS09355 0.15 -0.3
2,090,678 + LRK53_RS09355 0.15 +1.4
2,090,678 + LRK53_RS09355 0.15 +0.2
2,090,678 + LRK53_RS09355 0.15 +0.8
2,090,678 + LRK53_RS09355 0.15 -1.3
2,090,679 - LRK53_RS09355 0.16 -0.7
2,090,679 - LRK53_RS09355 0.16 -1.8
2,090,679 - LRK53_RS09355 0.16 +0.7
2,090,679 - LRK53_RS09355 0.16 +0.2
2,090,679 - LRK53_RS09355 0.16 -1.7
2,090,903 + LRK53_RS09355 0.32 -1.7
2,090,903 + LRK53_RS09355 0.32 -0.9
2,090,904 - LRK53_RS09355 0.33 +1.6
2,090,904 - LRK53_RS09355 0.33 -2.8
2,090,904 - LRK53_RS09355 0.33 +0.8
2,090,904 - LRK53_RS09355 0.33 -1.4
2,090,984 + LRK53_RS09355 0.39 -0.4
2,090,985 - LRK53_RS09355 0.39 -0.7
2,091,134 + LRK53_RS09355 0.50 +0.4
2,091,134 + LRK53_RS09355 0.50 -1.1
2,091,134 + LRK53_RS09355 0.50 +0.1
2,091,135 - LRK53_RS09355 0.50 -0.4
2,091,135 - LRK53_RS09355 0.50 +0.7
2,091,135 - LRK53_RS09355 0.50 -0.7
2,091,135 - LRK53_RS09355 0.50 +1.1
2,091,135 - LRK53_RS09355 0.50 -0.6
2,091,194 + LRK53_RS09355 0.54 +0.6
2,091,194 + LRK53_RS09355 0.54 -1.2
2,091,278 + LRK53_RS09355 0.61 -0.8

Or see this region's nucleotide sequence