Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09345 and LRK53_RS09350 are separated by 264 nucleotides LRK53_RS09350 and LRK53_RS09355 are separated by 41 nucleotides
LRK53_RS09345: LRK53_RS09345 - aconitate hydratase AcnA, at 2,086,466 to 2,089,216
_RS09345
LRK53_RS09350: LRK53_RS09350 - LysR family transcriptional regulator, at 2,089,481 to 2,090,431
_RS09350
LRK53_RS09355: LRK53_RS09355 - carbohydrate porin, at 2,090,473 to 2,091,798
_RS09355
Position (kb)
2089
2090
2091 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2089.687 kb on + strand, within LRK53_RS09350 at 2089.826 kb on + strand, within LRK53_RS09350 at 2089.826 kb on + strand, within LRK53_RS09350 at 2089.827 kb on - strand, within LRK53_RS09350 at 2090.306 kb on + strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.307 kb on - strand, within LRK53_RS09350 at 2090.490 kb on + strand at 2090.490 kb on + strand at 2090.490 kb on + strand at 2090.490 kb on + strand at 2090.490 kb on + strand at 2090.490 kb on + strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.491 kb on - strand at 2090.531 kb on + strand at 2090.531 kb on + strand at 2090.531 kb on + strand at 2090.531 kb on + strand at 2090.531 kb on + strand at 2090.532 kb on - strand at 2090.532 kb on - strand at 2090.576 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.597 kb on + strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.598 kb on - strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.600 kb on + strand at 2090.601 kb on - strand at 2090.601 kb on - strand at 2090.601 kb on - strand at 2090.601 kb on - strand at 2090.601 kb on - strand at 2090.678 kb on + strand, within LRK53_RS09355 at 2090.678 kb on + strand, within LRK53_RS09355 at 2090.678 kb on + strand, within LRK53_RS09355 at 2090.678 kb on + strand, within LRK53_RS09355 at 2090.678 kb on + strand, within LRK53_RS09355 at 2090.679 kb on - strand, within LRK53_RS09355 at 2090.679 kb on - strand, within LRK53_RS09355 at 2090.679 kb on - strand, within LRK53_RS09355 at 2090.679 kb on - strand, within LRK53_RS09355 at 2090.679 kb on - strand, within LRK53_RS09355 at 2090.903 kb on + strand, within LRK53_RS09355 at 2090.903 kb on + strand, within LRK53_RS09355 at 2090.904 kb on - strand, within LRK53_RS09355 at 2090.904 kb on - strand, within LRK53_RS09355 at 2090.904 kb on - strand, within LRK53_RS09355 at 2090.904 kb on - strand, within LRK53_RS09355 at 2090.984 kb on + strand, within LRK53_RS09355 at 2090.985 kb on - strand, within LRK53_RS09355 at 2091.134 kb on + strand, within LRK53_RS09355 at 2091.134 kb on + strand, within LRK53_RS09355 at 2091.134 kb on + strand, within LRK53_RS09355 at 2091.135 kb on - strand, within LRK53_RS09355 at 2091.135 kb on - strand, within LRK53_RS09355 at 2091.135 kb on - strand, within LRK53_RS09355 at 2091.135 kb on - strand, within LRK53_RS09355 at 2091.135 kb on - strand, within LRK53_RS09355 at 2091.194 kb on + strand, within LRK53_RS09355 at 2091.194 kb on + strand, within LRK53_RS09355 at 2091.278 kb on + strand, within LRK53_RS09355
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,089,687 + LRK53_RS09350 0.22 -2.0 2,089,826 + LRK53_RS09350 0.36 +0.2 2,089,826 + LRK53_RS09350 0.36 -1.4 2,089,827 - LRK53_RS09350 0.36 -1.7 2,090,306 + LRK53_RS09350 0.87 -2.1 2,090,307 - LRK53_RS09350 0.87 -0.9 2,090,307 - LRK53_RS09350 0.87 -1.4 2,090,307 - LRK53_RS09350 0.87 +0.3 2,090,307 - LRK53_RS09350 0.87 -1.1 2,090,307 - LRK53_RS09350 0.87 -2.4 2,090,307 - LRK53_RS09350 0.87 -1.0 2,090,490 + +1.3 2,090,490 + -0.3 2,090,490 + -0.4 2,090,490 + -0.6 2,090,490 + -0.4 2,090,490 + -0.7 2,090,491 - -1.7 2,090,491 - +0.4 2,090,491 - +0.3 2,090,491 - +1.1 2,090,491 - -1.7 2,090,491 - +0.3 2,090,491 - -0.1 2,090,531 + -0.0 2,090,531 + -2.0 2,090,531 + +0.2 2,090,531 + -0.4 2,090,531 + -0.7 2,090,532 - +0.4 2,090,532 - -0.8 2,090,576 + -0.5 2,090,597 + +0.6 2,090,597 + +0.1 2,090,597 + -0.9 2,090,597 + +0.0 2,090,597 + -0.9 2,090,597 + +0.0 2,090,597 + -0.1 2,090,597 + +0.4 2,090,597 + -1.3 2,090,597 + +1.0 2,090,597 + -2.1 2,090,597 + -1.0 2,090,597 + +0.5 2,090,597 + -0.9 2,090,598 - +0.8 2,090,598 - -1.0 2,090,598 - +1.2 2,090,598 - -0.6 2,090,598 - +0.4 2,090,598 - -0.2 2,090,598 - -1.4 2,090,598 - -1.0 2,090,598 - -0.2 2,090,598 - -1.3 2,090,598 - +1.4 2,090,598 - -0.2 2,090,600 + +0.0 2,090,600 + -3.6 2,090,600 + +0.9 2,090,600 + -3.3 2,090,600 + -0.6 2,090,600 + -0.4 2,090,600 + +2.4 2,090,601 - +1.4 2,090,601 - +0.8 2,090,601 - -0.5 2,090,601 - -2.2 2,090,601 - +0.3 2,090,678 + LRK53_RS09355 0.15 -0.3 2,090,678 + LRK53_RS09355 0.15 +1.4 2,090,678 + LRK53_RS09355 0.15 +0.2 2,090,678 + LRK53_RS09355 0.15 +0.8 2,090,678 + LRK53_RS09355 0.15 -1.3 2,090,679 - LRK53_RS09355 0.16 -0.7 2,090,679 - LRK53_RS09355 0.16 -1.8 2,090,679 - LRK53_RS09355 0.16 +0.7 2,090,679 - LRK53_RS09355 0.16 +0.2 2,090,679 - LRK53_RS09355 0.16 -1.7 2,090,903 + LRK53_RS09355 0.32 -1.7 2,090,903 + LRK53_RS09355 0.32 -0.9 2,090,904 - LRK53_RS09355 0.33 +1.6 2,090,904 - LRK53_RS09355 0.33 -2.8 2,090,904 - LRK53_RS09355 0.33 +0.8 2,090,904 - LRK53_RS09355 0.33 -1.4 2,090,984 + LRK53_RS09355 0.39 -0.4 2,090,985 - LRK53_RS09355 0.39 -0.7 2,091,134 + LRK53_RS09355 0.50 +0.4 2,091,134 + LRK53_RS09355 0.50 -1.1 2,091,134 + LRK53_RS09355 0.50 +0.1 2,091,135 - LRK53_RS09355 0.50 -0.4 2,091,135 - LRK53_RS09355 0.50 +0.7 2,091,135 - LRK53_RS09355 0.50 -0.7 2,091,135 - LRK53_RS09355 0.50 +1.1 2,091,135 - LRK53_RS09355 0.50 -0.6 2,091,194 + LRK53_RS09355 0.54 +0.6 2,091,194 + LRK53_RS09355 0.54 -1.2 2,091,278 + LRK53_RS09355 0.61 -0.8
Or see this region's nucleotide sequence