Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09290

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09280 and LRK53_RS09285 are separated by 100 nucleotidesLRK53_RS09285 and LRK53_RS09290 overlap by 80 nucleotidesLRK53_RS09290 and LRK53_RS09295 are separated by 86 nucleotides LRK53_RS09280: LRK53_RS09280 - amidohydrolase, at 2,073,583 to 2,075,250 _RS09280 LRK53_RS09285: LRK53_RS09285 - NAD(P)H-dependent oxidoreductase, at 2,075,351 to 2,075,644 _RS09285 LRK53_RS09290: LRK53_RS09290 - hypothetical protein, at 2,075,565 to 2,075,825 _RS09290 LRK53_RS09295: LRK53_RS09295 - LysR substrate-binding domain-containing protein, at 2,075,912 to 2,076,886 _RS09295 Position (kb) 2075 2076Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2074.898 kb on + strand, within LRK53_RS09280at 2074.898 kb on + strand, within LRK53_RS09280at 2074.898 kb on + strand, within LRK53_RS09280at 2074.899 kb on - strand, within LRK53_RS09280at 2074.981 kb on + strand, within LRK53_RS09280at 2074.981 kb on + strand, within LRK53_RS09280at 2074.981 kb on + strand, within LRK53_RS09280at 2074.981 kb on + strand, within LRK53_RS09280at 2075.156 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.592 kb on + strandat 2075.593 kb on - strandat 2075.593 kb on - strandat 2075.593 kb on - strandat 2075.593 kb on - strandat 2075.593 kb on - strandat 2075.642 kb on + strandat 2075.642 kb on + strandat 2075.643 kb on - strandat 2075.643 kb on - strandat 2075.725 kb on - strand, within LRK53_RS09290at 2075.784 kb on - strand, within LRK53_RS09290at 2075.784 kb on - strand, within LRK53_RS09290at 2075.845 kb on + strandat 2075.845 kb on + strandat 2075.845 kb on + strandat 2075.845 kb on + strandat 2075.845 kb on + strandat 2075.846 kb on - strandat 2075.846 kb on - strandat 2075.846 kb on - strandat 2075.846 kb on - strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.847 kb on + strandat 2075.848 kb on - strandat 2075.848 kb on - strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.954 kb on + strandat 2075.955 kb on - strandat 2075.955 kb on - strandat 2075.955 kb on - strandat 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.128 kb on + strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.129 kb on - strand, within LRK53_RS09295at 2076.180 kb on + strand, within LRK53_RS09295at 2076.181 kb on - strand, within LRK53_RS09295at 2076.347 kb on + strand, within LRK53_RS09295at 2076.347 kb on + strand, within LRK53_RS09295at 2076.348 kb on - strand, within LRK53_RS09295at 2076.348 kb on - strand, within LRK53_RS09295at 2076.348 kb on - strand, within LRK53_RS09295at 2076.752 kb on + strand, within LRK53_RS09295at 2076.752 kb on + strand, within LRK53_RS09295at 2076.783 kb on + strand, within LRK53_RS09295

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,074,898 + LRK53_RS09280 0.79 +0.0
2,074,898 + LRK53_RS09280 0.79 -0.9
2,074,898 + LRK53_RS09280 0.79 -1.5
2,074,899 - LRK53_RS09280 0.79 -1.7
2,074,981 + LRK53_RS09280 0.84 -2.6
2,074,981 + LRK53_RS09280 0.84 -1.5
2,074,981 + LRK53_RS09280 0.84 +1.0
2,074,981 + LRK53_RS09280 0.84 +0.6
2,075,156 + +0.6
2,075,592 + -2.2
2,075,592 + +0.1
2,075,592 + -3.2
2,075,592 + -1.2
2,075,592 + +1.0
2,075,592 + -0.7
2,075,592 + -2.0
2,075,592 + +0.4
2,075,593 - -1.3
2,075,593 - -1.3
2,075,593 - -1.0
2,075,593 - +0.3
2,075,593 - -0.7
2,075,642 + -2.6
2,075,642 + -0.2
2,075,643 - -0.0
2,075,643 - -1.1
2,075,725 - LRK53_RS09290 0.61 -1.2
2,075,784 - LRK53_RS09290 0.84 -0.6
2,075,784 - LRK53_RS09290 0.84 -0.4
2,075,845 + -1.2
2,075,845 + -1.1
2,075,845 + +1.2
2,075,845 + +0.9
2,075,845 + -0.1
2,075,846 - -0.8
2,075,846 - -1.3
2,075,846 - +1.3
2,075,846 - -0.6
2,075,847 + -1.0
2,075,847 + -0.5
2,075,847 + -1.3
2,075,847 + -1.9
2,075,847 + +2.4
2,075,847 + -2.5
2,075,847 + +1.1
2,075,847 + -2.5
2,075,848 - -1.8
2,075,848 - -0.3
2,075,954 + -0.7
2,075,954 + -0.1
2,075,954 + -2.9
2,075,954 + +0.2
2,075,954 + -1.1
2,075,954 + +1.4
2,075,954 + +0.3
2,075,954 + -0.3
2,075,954 + -0.3
2,075,955 - +1.9
2,075,955 - -0.9
2,075,955 - -1.3
2,076,128 + LRK53_RS09295 0.22 -1.4
2,076,128 + LRK53_RS09295 0.22 -2.1
2,076,128 + LRK53_RS09295 0.22 +0.7
2,076,128 + LRK53_RS09295 0.22 -2.6
2,076,128 + LRK53_RS09295 0.22 +0.1
2,076,128 + LRK53_RS09295 0.22 -1.2
2,076,128 + LRK53_RS09295 0.22 -1.0
2,076,128 + LRK53_RS09295 0.22 +2.1
2,076,128 + LRK53_RS09295 0.22 +0.2
2,076,128 + LRK53_RS09295 0.22 -1.4
2,076,128 + LRK53_RS09295 0.22 +0.6
2,076,128 + LRK53_RS09295 0.22 -0.7
2,076,128 + LRK53_RS09295 0.22 -2.8
2,076,128 + LRK53_RS09295 0.22 -2.7
2,076,128 + LRK53_RS09295 0.22 +0.4
2,076,128 + LRK53_RS09295 0.22 +1.0
2,076,129 - LRK53_RS09295 0.22 -1.8
2,076,129 - LRK53_RS09295 0.22 +0.9
2,076,129 - LRK53_RS09295 0.22 -2.0
2,076,129 - LRK53_RS09295 0.22 -0.2
2,076,129 - LRK53_RS09295 0.22 -0.9
2,076,129 - LRK53_RS09295 0.22 -1.6
2,076,129 - LRK53_RS09295 0.22 +0.4
2,076,129 - LRK53_RS09295 0.22 +1.0
2,076,129 - LRK53_RS09295 0.22 -1.3
2,076,129 - LRK53_RS09295 0.22 -1.4
2,076,129 - LRK53_RS09295 0.22 +2.1
2,076,129 - LRK53_RS09295 0.22 -1.0
2,076,129 - LRK53_RS09295 0.22 -1.8
2,076,129 - LRK53_RS09295 0.22 -1.8
2,076,129 - LRK53_RS09295 0.22 -0.6
2,076,180 + LRK53_RS09295 0.27 -0.0
2,076,181 - LRK53_RS09295 0.28 +1.0
2,076,347 + LRK53_RS09295 0.45 -2.6
2,076,347 + LRK53_RS09295 0.45 +1.6
2,076,348 - LRK53_RS09295 0.45 +1.0
2,076,348 - LRK53_RS09295 0.45 +0.8
2,076,348 - LRK53_RS09295 0.45 +0.8
2,076,752 + LRK53_RS09295 0.86 -1.0
2,076,752 + LRK53_RS09295 0.86 +0.4
2,076,783 + LRK53_RS09295 0.89 +0.1

Or see this region's nucleotide sequence