Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09280 and LRK53_RS09285 are separated by 100 nucleotides LRK53_RS09285 and LRK53_RS09290 overlap by 80 nucleotides LRK53_RS09290 and LRK53_RS09295 are separated by 86 nucleotides
LRK53_RS09280: LRK53_RS09280 - amidohydrolase, at 2,073,583 to 2,075,250
_RS09280
LRK53_RS09285: LRK53_RS09285 - NAD(P)H-dependent oxidoreductase, at 2,075,351 to 2,075,644
_RS09285
LRK53_RS09290: LRK53_RS09290 - hypothetical protein, at 2,075,565 to 2,075,825
_RS09290
LRK53_RS09295: LRK53_RS09295 - LysR substrate-binding domain-containing protein, at 2,075,912 to 2,076,886
_RS09295
Position (kb)
2075
2076 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2074.898 kb on + strand, within LRK53_RS09280 at 2074.898 kb on + strand, within LRK53_RS09280 at 2074.898 kb on + strand, within LRK53_RS09280 at 2074.899 kb on - strand, within LRK53_RS09280 at 2074.981 kb on + strand, within LRK53_RS09280 at 2074.981 kb on + strand, within LRK53_RS09280 at 2074.981 kb on + strand, within LRK53_RS09280 at 2074.981 kb on + strand, within LRK53_RS09280 at 2075.156 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.592 kb on + strand at 2075.593 kb on - strand at 2075.593 kb on - strand at 2075.593 kb on - strand at 2075.593 kb on - strand at 2075.593 kb on - strand at 2075.642 kb on + strand at 2075.642 kb on + strand at 2075.643 kb on - strand at 2075.643 kb on - strand at 2075.725 kb on - strand, within LRK53_RS09290 at 2075.784 kb on - strand, within LRK53_RS09290 at 2075.784 kb on - strand, within LRK53_RS09290 at 2075.845 kb on + strand at 2075.845 kb on + strand at 2075.845 kb on + strand at 2075.845 kb on + strand at 2075.845 kb on + strand at 2075.846 kb on - strand at 2075.846 kb on - strand at 2075.846 kb on - strand at 2075.846 kb on - strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.847 kb on + strand at 2075.848 kb on - strand at 2075.848 kb on - strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.954 kb on + strand at 2075.955 kb on - strand at 2075.955 kb on - strand at 2075.955 kb on - strand at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.128 kb on + strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.129 kb on - strand, within LRK53_RS09295 at 2076.180 kb on + strand, within LRK53_RS09295 at 2076.181 kb on - strand, within LRK53_RS09295 at 2076.347 kb on + strand, within LRK53_RS09295 at 2076.347 kb on + strand, within LRK53_RS09295 at 2076.348 kb on - strand, within LRK53_RS09295 at 2076.348 kb on - strand, within LRK53_RS09295 at 2076.348 kb on - strand, within LRK53_RS09295 at 2076.752 kb on + strand, within LRK53_RS09295 at 2076.752 kb on + strand, within LRK53_RS09295 at 2076.783 kb on + strand, within LRK53_RS09295
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,074,898 + LRK53_RS09280 0.79 +0.0 2,074,898 + LRK53_RS09280 0.79 -0.9 2,074,898 + LRK53_RS09280 0.79 -1.5 2,074,899 - LRK53_RS09280 0.79 -1.7 2,074,981 + LRK53_RS09280 0.84 -2.6 2,074,981 + LRK53_RS09280 0.84 -1.5 2,074,981 + LRK53_RS09280 0.84 +1.0 2,074,981 + LRK53_RS09280 0.84 +0.6 2,075,156 + +0.6 2,075,592 + -2.2 2,075,592 + +0.1 2,075,592 + -3.2 2,075,592 + -1.2 2,075,592 + +1.0 2,075,592 + -0.7 2,075,592 + -2.0 2,075,592 + +0.4 2,075,593 - -1.3 2,075,593 - -1.3 2,075,593 - -1.0 2,075,593 - +0.3 2,075,593 - -0.7 2,075,642 + -2.6 2,075,642 + -0.2 2,075,643 - -0.0 2,075,643 - -1.1 2,075,725 - LRK53_RS09290 0.61 -1.2 2,075,784 - LRK53_RS09290 0.84 -0.6 2,075,784 - LRK53_RS09290 0.84 -0.4 2,075,845 + -1.2 2,075,845 + -1.1 2,075,845 + +1.2 2,075,845 + +0.9 2,075,845 + -0.1 2,075,846 - -0.8 2,075,846 - -1.3 2,075,846 - +1.3 2,075,846 - -0.6 2,075,847 + -1.0 2,075,847 + -0.5 2,075,847 + -1.3 2,075,847 + -1.9 2,075,847 + +2.4 2,075,847 + -2.5 2,075,847 + +1.1 2,075,847 + -2.5 2,075,848 - -1.8 2,075,848 - -0.3 2,075,954 + -0.7 2,075,954 + -0.1 2,075,954 + -2.9 2,075,954 + +0.2 2,075,954 + -1.1 2,075,954 + +1.4 2,075,954 + +0.3 2,075,954 + -0.3 2,075,954 + -0.3 2,075,955 - +1.9 2,075,955 - -0.9 2,075,955 - -1.3 2,076,128 + LRK53_RS09295 0.22 -1.4 2,076,128 + LRK53_RS09295 0.22 -2.1 2,076,128 + LRK53_RS09295 0.22 +0.7 2,076,128 + LRK53_RS09295 0.22 -2.6 2,076,128 + LRK53_RS09295 0.22 +0.1 2,076,128 + LRK53_RS09295 0.22 -1.2 2,076,128 + LRK53_RS09295 0.22 -1.0 2,076,128 + LRK53_RS09295 0.22 +2.1 2,076,128 + LRK53_RS09295 0.22 +0.2 2,076,128 + LRK53_RS09295 0.22 -1.4 2,076,128 + LRK53_RS09295 0.22 +0.6 2,076,128 + LRK53_RS09295 0.22 -0.7 2,076,128 + LRK53_RS09295 0.22 -2.8 2,076,128 + LRK53_RS09295 0.22 -2.7 2,076,128 + LRK53_RS09295 0.22 +0.4 2,076,128 + LRK53_RS09295 0.22 +1.0 2,076,129 - LRK53_RS09295 0.22 -1.8 2,076,129 - LRK53_RS09295 0.22 +0.9 2,076,129 - LRK53_RS09295 0.22 -2.0 2,076,129 - LRK53_RS09295 0.22 -0.2 2,076,129 - LRK53_RS09295 0.22 -0.9 2,076,129 - LRK53_RS09295 0.22 -1.6 2,076,129 - LRK53_RS09295 0.22 +0.4 2,076,129 - LRK53_RS09295 0.22 +1.0 2,076,129 - LRK53_RS09295 0.22 -1.3 2,076,129 - LRK53_RS09295 0.22 -1.4 2,076,129 - LRK53_RS09295 0.22 +2.1 2,076,129 - LRK53_RS09295 0.22 -1.0 2,076,129 - LRK53_RS09295 0.22 -1.8 2,076,129 - LRK53_RS09295 0.22 -1.8 2,076,129 - LRK53_RS09295 0.22 -0.6 2,076,180 + LRK53_RS09295 0.27 -0.0 2,076,181 - LRK53_RS09295 0.28 +1.0 2,076,347 + LRK53_RS09295 0.45 -2.6 2,076,347 + LRK53_RS09295 0.45 +1.6 2,076,348 - LRK53_RS09295 0.45 +1.0 2,076,348 - LRK53_RS09295 0.45 +0.8 2,076,348 - LRK53_RS09295 0.45 +0.8 2,076,752 + LRK53_RS09295 0.86 -1.0 2,076,752 + LRK53_RS09295 0.86 +0.4 2,076,783 + LRK53_RS09295 0.89 +0.1
Or see this region's nucleotide sequence