Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09110

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09105 and LRK53_RS09110 overlap by 4 nucleotidesLRK53_RS09110 and LRK53_RS09115 are separated by 138 nucleotides LRK53_RS09105: LRK53_RS09105 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,036,419 to 2,037,435 _RS09105 LRK53_RS09110: LRK53_RS09110 - GtrA family protein, at 2,037,432 to 2,037,845 _RS09110 LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587 _RS09115 Position (kb) 2037 2038Strain fitness (log2 ratio) -2 -1 0 1 2at 2036.871 kb on + strand, within LRK53_RS09105at 2036.956 kb on + strand, within LRK53_RS09105at 2036.956 kb on + strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.285 kb on + strand, within LRK53_RS09105at 2037.543 kb on + strand, within LRK53_RS09110at 2037.606 kb on + strand, within LRK53_RS09110at 2037.607 kb on - strand, within LRK53_RS09110at 2037.607 kb on - strand, within LRK53_RS09110at 2037.696 kb on + strand, within LRK53_RS09110at 2037.697 kb on - strand, within LRK53_RS09110at 2037.705 kb on + strand, within LRK53_RS09110at 2037.705 kb on + strand, within LRK53_RS09110at 2037.706 kb on - strand, within LRK53_RS09110at 2037.706 kb on - strand, within LRK53_RS09110at 2037.706 kb on - strand, within LRK53_RS09110at 2037.706 kb on - strand, within LRK53_RS09110at 2037.715 kb on + strand, within LRK53_RS09110at 2037.715 kb on + strand, within LRK53_RS09110at 2037.715 kb on + strand, within LRK53_RS09110at 2037.715 kb on + strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.716 kb on - strand, within LRK53_RS09110at 2037.858 kb on + strandat 2037.859 kb on - strandat 2037.874 kb on + strandat 2037.874 kb on + strandat 2037.875 kb on - strandat 2037.895 kb on + strandat 2037.904 kb on + strandat 2037.904 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,036,871 + LRK53_RS09105 0.44 -0.1
2,036,956 + LRK53_RS09105 0.53 +1.6
2,036,956 + LRK53_RS09105 0.53 +0.5
2,036,957 - LRK53_RS09105 0.53 -0.3
2,036,957 - LRK53_RS09105 0.53 +1.0
2,036,957 - LRK53_RS09105 0.53 -0.3
2,036,957 - LRK53_RS09105 0.53 +0.3
2,037,151 + LRK53_RS09105 0.72 -1.3
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 +0.7
2,037,151 + LRK53_RS09105 0.72 -0.7
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 -0.7
2,037,151 + LRK53_RS09105 0.72 -1.3
2,037,151 + LRK53_RS09105 0.72 +0.1
2,037,151 + LRK53_RS09105 0.72 -0.3
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 -1.6
2,037,151 + LRK53_RS09105 0.72 -0.6
2,037,151 + LRK53_RS09105 0.72 +0.4
2,037,151 + LRK53_RS09105 0.72 +0.9
2,037,152 - LRK53_RS09105 0.72 +0.4
2,037,152 - LRK53_RS09105 0.72 +1.3
2,037,152 - LRK53_RS09105 0.72 -1.1
2,037,152 - LRK53_RS09105 0.72 -1.3
2,037,152 - LRK53_RS09105 0.72 +0.7
2,037,152 - LRK53_RS09105 0.72 -0.4
2,037,152 - LRK53_RS09105 0.72 -1.6
2,037,152 - LRK53_RS09105 0.72 +1.1
2,037,152 - LRK53_RS09105 0.72 -1.0
2,037,152 - LRK53_RS09105 0.72 +1.9
2,037,152 - LRK53_RS09105 0.72 -0.5
2,037,152 - LRK53_RS09105 0.72 -1.1
2,037,152 - LRK53_RS09105 0.72 -0.4
2,037,152 - LRK53_RS09105 0.72 +0.8
2,037,152 - LRK53_RS09105 0.72 +2.2
2,037,175 + LRK53_RS09105 0.74 +2.7
2,037,175 + LRK53_RS09105 0.74 -1.4
2,037,175 + LRK53_RS09105 0.74 -0.8
2,037,176 - LRK53_RS09105 0.74 -0.5
2,037,176 - LRK53_RS09105 0.74 +1.6
2,037,176 - LRK53_RS09105 0.74 -1.3
2,037,176 - LRK53_RS09105 0.74 -1.3
2,037,176 - LRK53_RS09105 0.74 +1.4
2,037,285 + LRK53_RS09105 0.85 -2.3
2,037,543 + LRK53_RS09110 0.27 +0.0
2,037,606 + LRK53_RS09110 0.42 +0.9
2,037,607 - LRK53_RS09110 0.42 +1.3
2,037,607 - LRK53_RS09110 0.42 -0.7
2,037,696 + LRK53_RS09110 0.64 +0.6
2,037,697 - LRK53_RS09110 0.64 +0.6
2,037,705 + LRK53_RS09110 0.66 -0.6
2,037,705 + LRK53_RS09110 0.66 +0.2
2,037,706 - LRK53_RS09110 0.66 -1.1
2,037,706 - LRK53_RS09110 0.66 -1.0
2,037,706 - LRK53_RS09110 0.66 +2.2
2,037,706 - LRK53_RS09110 0.66 -0.9
2,037,715 + LRK53_RS09110 0.68 +1.5
2,037,715 + LRK53_RS09110 0.68 -0.1
2,037,715 + LRK53_RS09110 0.68 +0.4
2,037,715 + LRK53_RS09110 0.68 +0.9
2,037,716 - LRK53_RS09110 0.69 -0.4
2,037,716 - LRK53_RS09110 0.69 +0.4
2,037,716 - LRK53_RS09110 0.69 -0.4
2,037,716 - LRK53_RS09110 0.69 +0.4
2,037,716 - LRK53_RS09110 0.69 +1.4
2,037,716 - LRK53_RS09110 0.69 -2.5
2,037,716 - LRK53_RS09110 0.69 -0.4
2,037,858 + +0.4
2,037,859 - +0.5
2,037,874 + +0.2
2,037,874 + -0.5
2,037,875 - -0.9
2,037,895 + -0.9
2,037,904 + -0.4
2,037,904 + +0.9

Or see this region's nucleotide sequence