Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09105 and LRK53_RS09110 overlap by 4 nucleotides LRK53_RS09110 and LRK53_RS09115 are separated by 138 nucleotides
LRK53_RS09105: LRK53_RS09105 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,036,419 to 2,037,435
_RS09105
LRK53_RS09110: LRK53_RS09110 - GtrA family protein, at 2,037,432 to 2,037,845
_RS09110
LRK53_RS09115: LRK53_RS09115 - DNA gyrase subunit A, at 2,037,984 to 2,040,587
_RS09115
Position (kb)
2037
2038 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2036.871 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.285 kb on + strand, within LRK53_RS09105 at 2037.543 kb on + strand, within LRK53_RS09110 at 2037.606 kb on + strand, within LRK53_RS09110 at 2037.607 kb on - strand, within LRK53_RS09110 at 2037.607 kb on - strand, within LRK53_RS09110 at 2037.696 kb on + strand, within LRK53_RS09110 at 2037.697 kb on - strand, within LRK53_RS09110 at 2037.705 kb on + strand, within LRK53_RS09110 at 2037.705 kb on + strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.706 kb on - strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.715 kb on + strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.716 kb on - strand, within LRK53_RS09110 at 2037.858 kb on + strand at 2037.859 kb on - strand at 2037.874 kb on + strand at 2037.874 kb on + strand at 2037.875 kb on - strand at 2037.895 kb on + strand at 2037.904 kb on + strand at 2037.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,036,871 + LRK53_RS09105 0.44 -0.1 2,036,956 + LRK53_RS09105 0.53 +1.6 2,036,956 + LRK53_RS09105 0.53 +0.5 2,036,957 - LRK53_RS09105 0.53 -0.3 2,036,957 - LRK53_RS09105 0.53 +1.0 2,036,957 - LRK53_RS09105 0.53 -0.3 2,036,957 - LRK53_RS09105 0.53 +0.3 2,037,151 + LRK53_RS09105 0.72 -1.3 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 +0.7 2,037,151 + LRK53_RS09105 0.72 -0.7 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 -0.7 2,037,151 + LRK53_RS09105 0.72 -1.3 2,037,151 + LRK53_RS09105 0.72 +0.1 2,037,151 + LRK53_RS09105 0.72 -0.3 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 -1.6 2,037,151 + LRK53_RS09105 0.72 -0.6 2,037,151 + LRK53_RS09105 0.72 +0.4 2,037,151 + LRK53_RS09105 0.72 +0.9 2,037,152 - LRK53_RS09105 0.72 +0.4 2,037,152 - LRK53_RS09105 0.72 +1.3 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -1.3 2,037,152 - LRK53_RS09105 0.72 +0.7 2,037,152 - LRK53_RS09105 0.72 -0.4 2,037,152 - LRK53_RS09105 0.72 -1.6 2,037,152 - LRK53_RS09105 0.72 +1.1 2,037,152 - LRK53_RS09105 0.72 -1.0 2,037,152 - LRK53_RS09105 0.72 +1.9 2,037,152 - LRK53_RS09105 0.72 -0.5 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -0.4 2,037,152 - LRK53_RS09105 0.72 +0.8 2,037,152 - LRK53_RS09105 0.72 +2.2 2,037,175 + LRK53_RS09105 0.74 +2.7 2,037,175 + LRK53_RS09105 0.74 -1.4 2,037,175 + LRK53_RS09105 0.74 -0.8 2,037,176 - LRK53_RS09105 0.74 -0.5 2,037,176 - LRK53_RS09105 0.74 +1.6 2,037,176 - LRK53_RS09105 0.74 -1.3 2,037,176 - LRK53_RS09105 0.74 -1.3 2,037,176 - LRK53_RS09105 0.74 +1.4 2,037,285 + LRK53_RS09105 0.85 -2.3 2,037,543 + LRK53_RS09110 0.27 +0.0 2,037,606 + LRK53_RS09110 0.42 +0.9 2,037,607 - LRK53_RS09110 0.42 +1.3 2,037,607 - LRK53_RS09110 0.42 -0.7 2,037,696 + LRK53_RS09110 0.64 +0.6 2,037,697 - LRK53_RS09110 0.64 +0.6 2,037,705 + LRK53_RS09110 0.66 -0.6 2,037,705 + LRK53_RS09110 0.66 +0.2 2,037,706 - LRK53_RS09110 0.66 -1.1 2,037,706 - LRK53_RS09110 0.66 -1.0 2,037,706 - LRK53_RS09110 0.66 +2.2 2,037,706 - LRK53_RS09110 0.66 -0.9 2,037,715 + LRK53_RS09110 0.68 +1.5 2,037,715 + LRK53_RS09110 0.68 -0.1 2,037,715 + LRK53_RS09110 0.68 +0.4 2,037,715 + LRK53_RS09110 0.68 +0.9 2,037,716 - LRK53_RS09110 0.69 -0.4 2,037,716 - LRK53_RS09110 0.69 +0.4 2,037,716 - LRK53_RS09110 0.69 -0.4 2,037,716 - LRK53_RS09110 0.69 +0.4 2,037,716 - LRK53_RS09110 0.69 +1.4 2,037,716 - LRK53_RS09110 0.69 -2.5 2,037,716 - LRK53_RS09110 0.69 -0.4 2,037,858 + +0.4 2,037,859 - +0.5 2,037,874 + +0.2 2,037,874 + -0.5 2,037,875 - -0.9 2,037,895 + -0.9 2,037,904 + -0.4 2,037,904 + +0.9
Or see this region's nucleotide sequence