Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09100

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09095 and LRK53_RS09100 are separated by 12 nucleotidesLRK53_RS09100 and LRK53_RS09105 are separated by 54 nucleotides LRK53_RS09095: LRK53_RS09095 - pha synthase subunit protein, at 2,034,253 to 2,035,284 _RS09095 LRK53_RS09100: LRK53_RS09100 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 2,035,297 to 2,036,364 _RS09100 LRK53_RS09105: LRK53_RS09105 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,036,419 to 2,037,435 _RS09105 Position (kb) 2035 2036 2037Strain fitness (log2 ratio) -2 -1 0 1 2at 2034.842 kb on - strand, within LRK53_RS09095at 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.282 kb on + strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.283 kb on - strandat 2035.348 kb on - strandat 2035.436 kb on - strand, within LRK53_RS09100at 2035.601 kb on - strand, within LRK53_RS09100at 2035.601 kb on - strand, within LRK53_RS09100at 2035.657 kb on + strand, within LRK53_RS09100at 2035.670 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.925 kb on - strand, within LRK53_RS09100at 2035.969 kb on + strand, within LRK53_RS09100at 2035.970 kb on - strand, within LRK53_RS09100at 2036.174 kb on + strand, within LRK53_RS09100at 2036.175 kb on - strand, within LRK53_RS09100at 2036.258 kb on - strandat 2036.296 kb on + strandat 2036.391 kb on + strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.392 kb on - strandat 2036.871 kb on + strand, within LRK53_RS09105at 2036.956 kb on + strand, within LRK53_RS09105at 2036.956 kb on + strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2036.957 kb on - strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.151 kb on + strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.152 kb on - strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.175 kb on + strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.176 kb on - strand, within LRK53_RS09105at 2037.285 kb on + strand, within LRK53_RS09105

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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2,034,842 - LRK53_RS09095 0.57 +2.0
2,035,282 + -0.5
2,035,282 + -1.3
2,035,282 + -1.3
2,035,282 + +0.8
2,035,282 + -0.1
2,035,282 + -0.7
2,035,282 + -1.7
2,035,282 + -0.7
2,035,283 - -0.3
2,035,283 - +0.7
2,035,283 - -2.6
2,035,283 - -0.4
2,035,283 - -0.4
2,035,348 - +2.4
2,035,436 - LRK53_RS09100 0.13 +0.9
2,035,601 - LRK53_RS09100 0.28 +0.2
2,035,601 - LRK53_RS09100 0.28 -1.4
2,035,657 + LRK53_RS09100 0.34 +2.1
2,035,670 - LRK53_RS09100 0.35 -0.6
2,035,925 - LRK53_RS09100 0.59 +1.9
2,035,925 - LRK53_RS09100 0.59 -1.5
2,035,925 - LRK53_RS09100 0.59 -0.4
2,035,925 - LRK53_RS09100 0.59 -1.4
2,035,925 - LRK53_RS09100 0.59 +1.6
2,035,925 - LRK53_RS09100 0.59 +1.4
2,035,925 - LRK53_RS09100 0.59 +2.3
2,035,969 + LRK53_RS09100 0.63 +0.6
2,035,970 - LRK53_RS09100 0.63 -1.0
2,036,174 + LRK53_RS09100 0.82 +0.4
2,036,175 - LRK53_RS09100 0.82 +0.4
2,036,258 - -0.6
2,036,296 + +0.0
2,036,391 + -1.0
2,036,392 - +0.8
2,036,392 - -1.4
2,036,392 - -1.3
2,036,392 - +0.1
2,036,392 - -1.1
2,036,392 - +0.7
2,036,392 - +0.4
2,036,392 - -0.7
2,036,392 - -1.1
2,036,392 - -0.2
2,036,871 + LRK53_RS09105 0.44 -0.1
2,036,956 + LRK53_RS09105 0.53 +1.6
2,036,956 + LRK53_RS09105 0.53 +0.5
2,036,957 - LRK53_RS09105 0.53 -0.3
2,036,957 - LRK53_RS09105 0.53 +1.0
2,036,957 - LRK53_RS09105 0.53 -0.3
2,036,957 - LRK53_RS09105 0.53 +0.3
2,037,151 + LRK53_RS09105 0.72 -1.3
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 +0.7
2,037,151 + LRK53_RS09105 0.72 -0.7
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 -0.7
2,037,151 + LRK53_RS09105 0.72 -1.3
2,037,151 + LRK53_RS09105 0.72 +0.1
2,037,151 + LRK53_RS09105 0.72 -0.3
2,037,151 + LRK53_RS09105 0.72 -0.9
2,037,151 + LRK53_RS09105 0.72 -1.6
2,037,151 + LRK53_RS09105 0.72 -0.6
2,037,151 + LRK53_RS09105 0.72 +0.4
2,037,151 + LRK53_RS09105 0.72 +0.9
2,037,152 - LRK53_RS09105 0.72 +0.4
2,037,152 - LRK53_RS09105 0.72 +1.3
2,037,152 - LRK53_RS09105 0.72 -1.1
2,037,152 - LRK53_RS09105 0.72 -1.3
2,037,152 - LRK53_RS09105 0.72 +0.7
2,037,152 - LRK53_RS09105 0.72 -0.4
2,037,152 - LRK53_RS09105 0.72 -1.6
2,037,152 - LRK53_RS09105 0.72 +1.1
2,037,152 - LRK53_RS09105 0.72 -1.0
2,037,152 - LRK53_RS09105 0.72 +1.9
2,037,152 - LRK53_RS09105 0.72 -0.5
2,037,152 - LRK53_RS09105 0.72 -1.1
2,037,152 - LRK53_RS09105 0.72 -0.4
2,037,152 - LRK53_RS09105 0.72 +0.8
2,037,152 - LRK53_RS09105 0.72 +2.2
2,037,175 + LRK53_RS09105 0.74 +2.7
2,037,175 + LRK53_RS09105 0.74 -1.4
2,037,175 + LRK53_RS09105 0.74 -0.8
2,037,176 - LRK53_RS09105 0.74 -0.5
2,037,176 - LRK53_RS09105 0.74 +1.6
2,037,176 - LRK53_RS09105 0.74 -1.3
2,037,176 - LRK53_RS09105 0.74 -1.3
2,037,176 - LRK53_RS09105 0.74 +1.4
2,037,285 + LRK53_RS09105 0.85 -2.3

Or see this region's nucleotide sequence