Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09095 and LRK53_RS09100 are separated by 12 nucleotides LRK53_RS09100 and LRK53_RS09105 are separated by 54 nucleotides
LRK53_RS09095: LRK53_RS09095 - pha synthase subunit protein, at 2,034,253 to 2,035,284
_RS09095
LRK53_RS09100: LRK53_RS09100 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 2,035,297 to 2,036,364
_RS09100
LRK53_RS09105: LRK53_RS09105 - S-methyl-5-thioribose-1-phosphate isomerase, at 2,036,419 to 2,037,435
_RS09105
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2034.842 kb on - strand, within LRK53_RS09095 at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.282 kb on + strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.283 kb on - strand at 2035.348 kb on - strand at 2035.436 kb on - strand, within LRK53_RS09100 at 2035.601 kb on - strand, within LRK53_RS09100 at 2035.601 kb on - strand, within LRK53_RS09100 at 2035.657 kb on + strand, within LRK53_RS09100 at 2035.670 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.925 kb on - strand, within LRK53_RS09100 at 2035.969 kb on + strand, within LRK53_RS09100 at 2035.970 kb on - strand, within LRK53_RS09100 at 2036.174 kb on + strand, within LRK53_RS09100 at 2036.175 kb on - strand, within LRK53_RS09100 at 2036.258 kb on - strand at 2036.296 kb on + strand at 2036.391 kb on + strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.392 kb on - strand at 2036.871 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.956 kb on + strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2036.957 kb on - strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.151 kb on + strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.152 kb on - strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.175 kb on + strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.176 kb on - strand, within LRK53_RS09105 at 2037.285 kb on + strand, within LRK53_RS09105
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 2,034,842 - LRK53_RS09095 0.57 +2.0 2,035,282 + -0.5 2,035,282 + -1.3 2,035,282 + -1.3 2,035,282 + +0.8 2,035,282 + -0.1 2,035,282 + -0.7 2,035,282 + -1.7 2,035,282 + -0.7 2,035,283 - -0.3 2,035,283 - +0.7 2,035,283 - -2.6 2,035,283 - -0.4 2,035,283 - -0.4 2,035,348 - +2.4 2,035,436 - LRK53_RS09100 0.13 +0.9 2,035,601 - LRK53_RS09100 0.28 +0.2 2,035,601 - LRK53_RS09100 0.28 -1.4 2,035,657 + LRK53_RS09100 0.34 +2.1 2,035,670 - LRK53_RS09100 0.35 -0.6 2,035,925 - LRK53_RS09100 0.59 +1.9 2,035,925 - LRK53_RS09100 0.59 -1.5 2,035,925 - LRK53_RS09100 0.59 -0.4 2,035,925 - LRK53_RS09100 0.59 -1.4 2,035,925 - LRK53_RS09100 0.59 +1.6 2,035,925 - LRK53_RS09100 0.59 +1.4 2,035,925 - LRK53_RS09100 0.59 +2.3 2,035,969 + LRK53_RS09100 0.63 +0.6 2,035,970 - LRK53_RS09100 0.63 -1.0 2,036,174 + LRK53_RS09100 0.82 +0.4 2,036,175 - LRK53_RS09100 0.82 +0.4 2,036,258 - -0.6 2,036,296 + +0.0 2,036,391 + -1.0 2,036,392 - +0.8 2,036,392 - -1.4 2,036,392 - -1.3 2,036,392 - +0.1 2,036,392 - -1.1 2,036,392 - +0.7 2,036,392 - +0.4 2,036,392 - -0.7 2,036,392 - -1.1 2,036,392 - -0.2 2,036,871 + LRK53_RS09105 0.44 -0.1 2,036,956 + LRK53_RS09105 0.53 +1.6 2,036,956 + LRK53_RS09105 0.53 +0.5 2,036,957 - LRK53_RS09105 0.53 -0.3 2,036,957 - LRK53_RS09105 0.53 +1.0 2,036,957 - LRK53_RS09105 0.53 -0.3 2,036,957 - LRK53_RS09105 0.53 +0.3 2,037,151 + LRK53_RS09105 0.72 -1.3 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 +0.7 2,037,151 + LRK53_RS09105 0.72 -0.7 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 -0.7 2,037,151 + LRK53_RS09105 0.72 -1.3 2,037,151 + LRK53_RS09105 0.72 +0.1 2,037,151 + LRK53_RS09105 0.72 -0.3 2,037,151 + LRK53_RS09105 0.72 -0.9 2,037,151 + LRK53_RS09105 0.72 -1.6 2,037,151 + LRK53_RS09105 0.72 -0.6 2,037,151 + LRK53_RS09105 0.72 +0.4 2,037,151 + LRK53_RS09105 0.72 +0.9 2,037,152 - LRK53_RS09105 0.72 +0.4 2,037,152 - LRK53_RS09105 0.72 +1.3 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -1.3 2,037,152 - LRK53_RS09105 0.72 +0.7 2,037,152 - LRK53_RS09105 0.72 -0.4 2,037,152 - LRK53_RS09105 0.72 -1.6 2,037,152 - LRK53_RS09105 0.72 +1.1 2,037,152 - LRK53_RS09105 0.72 -1.0 2,037,152 - LRK53_RS09105 0.72 +1.9 2,037,152 - LRK53_RS09105 0.72 -0.5 2,037,152 - LRK53_RS09105 0.72 -1.1 2,037,152 - LRK53_RS09105 0.72 -0.4 2,037,152 - LRK53_RS09105 0.72 +0.8 2,037,152 - LRK53_RS09105 0.72 +2.2 2,037,175 + LRK53_RS09105 0.74 +2.7 2,037,175 + LRK53_RS09105 0.74 -1.4 2,037,175 + LRK53_RS09105 0.74 -0.8 2,037,176 - LRK53_RS09105 0.74 -0.5 2,037,176 - LRK53_RS09105 0.74 +1.6 2,037,176 - LRK53_RS09105 0.74 -1.3 2,037,176 - LRK53_RS09105 0.74 -1.3 2,037,176 - LRK53_RS09105 0.74 +1.4 2,037,285 + LRK53_RS09105 0.85 -2.3
Or see this region's nucleotide sequence