Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08785 and LRK53_RS08790 are separated by 34 nucleotides LRK53_RS08790 and LRK53_RS08795 overlap by 4 nucleotides LRK53_RS08795 and LRK53_RS08800 are separated by 95 nucleotides LRK53_RS08800 and LRK53_RS08805 are separated by 83 nucleotides LRK53_RS08805 and LRK53_RS08815 are separated by 261 nucleotides
LRK53_RS08785: LRK53_RS08785 - glycosyltransferase family 9 protein, at 1,976,489 to 1,977,532
_RS08785
LRK53_RS08790: LRK53_RS08790 - 3-deoxy-D-manno-octulosonic acid kinase, at 1,977,567 to 1,978,298
_RS08790
LRK53_RS08795: LRK53_RS08795 - MBL fold metallo-hydrolase, at 1,978,295 to 1,979,053
_RS08795
LRK53_RS08800: LRK53_RS08800 - tRNA-Ser, at 1,979,149 to 1,979,260
_RS08800
LRK53_RS08805: LRK53_RS08805 - tRNA-Ser, at 1,979,344 to 1,979,436
_RS08805
LRK53_RS08815: LRK53_RS08815 - DNA polymerase III subunit gamma/tau, at 1,979,698 to 1,981,377
_RS08815
Position (kb) 1978
1979
1980 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1977.455 kb on - strand at 1977.543 kb on + strand at 1977.544 kb on - strand at 1977.762 kb on + strand, within LRK53_RS08790 at 1977.804 kb on + strand, within LRK53_RS08790 at 1977.805 kb on - strand, within LRK53_RS08790 at 1977.931 kb on - strand, within LRK53_RS08790 at 1978.269 kb on + strand at 1978.439 kb on + strand, within LRK53_RS08795 at 1978.440 kb on - strand, within LRK53_RS08795 at 1978.440 kb on - strand, within LRK53_RS08795 at 1978.474 kb on + strand, within LRK53_RS08795 at 1978.475 kb on - strand, within LRK53_RS08795 at 1978.571 kb on - strand, within LRK53_RS08795 at 1978.934 kb on + strand, within LRK53_RS08795 at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.099 kb on + strand at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.190 kb on + strand, within LRK53_RS08800 at 1979.192 kb on + strand, within LRK53_RS08800 at 1979.192 kb on + strand, within LRK53_RS08800 at 1979.192 kb on + strand, within LRK53_RS08800 at 1979.192 kb on + strand, within LRK53_RS08800 at 1979.192 kb on + strand, within LRK53_RS08800 at 1979.199 kb on + strand, within LRK53_RS08800 at 1979.321 kb on + strand at 1979.321 kb on + strand at 1979.321 kb on + strand at 1979.493 kb on + strand at 1979.641 kb on + strand at 1979.641 kb on + strand at 1979.641 kb on + strand at 1979.641 kb on + strand at 1979.642 kb on - strand at 1979.642 kb on - strand at 1979.642 kb on - strand at 1979.642 kb on - strand at 1979.642 kb on - strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.649 kb on + strand at 1979.650 kb on - strand at 1979.650 kb on - strand at 1979.650 kb on - strand at 1979.650 kb on - strand at 1979.650 kb on - strand at 1979.650 kb on - strand at 1979.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,977,455 - -0.4 1,977,543 + +0.7 1,977,544 - -2.4 1,977,762 + LRK53_RS08790 0.27 -0.4 1,977,804 + LRK53_RS08790 0.32 -1.8 1,977,805 - LRK53_RS08790 0.33 +1.7 1,977,931 - LRK53_RS08790 0.50 +0.4 1,978,269 + -0.1 1,978,439 + LRK53_RS08795 0.19 +1.1 1,978,440 - LRK53_RS08795 0.19 +0.4 1,978,440 - LRK53_RS08795 0.19 -0.2 1,978,474 + LRK53_RS08795 0.24 -0.7 1,978,475 - LRK53_RS08795 0.24 +0.7 1,978,571 - LRK53_RS08795 0.36 +1.6 1,978,934 + LRK53_RS08795 0.84 -1.3 1,979,099 + +0.6 1,979,099 + +0.6 1,979,099 + -1.6 1,979,099 + +0.7 1,979,099 + -1.6 1,979,099 + +0.9 1,979,099 + -3.4 1,979,099 + +0.6 1,979,099 + +0.3 1,979,099 + +0.4 1,979,099 + -0.4 1,979,190 + LRK53_RS08800 0.37 -0.7 1,979,190 + LRK53_RS08800 0.37 +0.9 1,979,190 + LRK53_RS08800 0.37 +2.1 1,979,190 + LRK53_RS08800 0.37 -1.3 1,979,190 + LRK53_RS08800 0.37 -2.6 1,979,190 + LRK53_RS08800 0.37 -1.2 1,979,190 + LRK53_RS08800 0.37 +1.3 1,979,190 + LRK53_RS08800 0.37 -0.8 1,979,190 + LRK53_RS08800 0.37 -2.6 1,979,190 + LRK53_RS08800 0.37 -1.6 1,979,190 + LRK53_RS08800 0.37 -0.4 1,979,190 + LRK53_RS08800 0.37 -0.6 1,979,190 + LRK53_RS08800 0.37 -0.3 1,979,190 + LRK53_RS08800 0.37 -2.2 1,979,190 + LRK53_RS08800 0.37 -1.0 1,979,190 + LRK53_RS08800 0.37 -0.2 1,979,190 + LRK53_RS08800 0.37 -1.4 1,979,190 + LRK53_RS08800 0.37 -1.0 1,979,190 + LRK53_RS08800 0.37 -0.1 1,979,190 + LRK53_RS08800 0.37 -1.9 1,979,190 + LRK53_RS08800 0.37 +0.2 1,979,190 + LRK53_RS08800 0.37 +0.6 1,979,190 + LRK53_RS08800 0.37 -1.9 1,979,190 + LRK53_RS08800 0.37 -0.1 1,979,190 + LRK53_RS08800 0.37 -1.0 1,979,190 + LRK53_RS08800 0.37 -0.4 1,979,190 + LRK53_RS08800 0.37 -0.9 1,979,190 + LRK53_RS08800 0.37 -0.6 1,979,192 + LRK53_RS08800 0.38 -0.1 1,979,192 + LRK53_RS08800 0.38 -1.1 1,979,192 + LRK53_RS08800 0.38 -1.5 1,979,192 + LRK53_RS08800 0.38 +0.5 1,979,192 + LRK53_RS08800 0.38 +1.0 1,979,199 + LRK53_RS08800 0.45 -0.9 1,979,321 + +0.1 1,979,321 + +0.3 1,979,321 + +0.4 1,979,493 + +0.2 1,979,641 + +0.7 1,979,641 + +2.0 1,979,641 + +0.4 1,979,641 + +1.0 1,979,642 - +1.8 1,979,642 - -1.5 1,979,642 - -0.0 1,979,642 - -0.5 1,979,642 - -1.6 1,979,649 + -0.8 1,979,649 + -0.8 1,979,649 + -1.0 1,979,649 + -0.9 1,979,649 + -0.9 1,979,649 + +1.6 1,979,649 + -1.4 1,979,649 + -1.5 1,979,649 + -0.2 1,979,649 + -0.3 1,979,649 + -0.6 1,979,649 + -1.9 1,979,649 + -0.0 1,979,649 + -1.9 1,979,649 + +0.7 1,979,649 + -2.0 1,979,649 + +0.4 1,979,649 + -0.8 1,979,649 + +0.4 1,979,649 + +0.0 1,979,649 + -0.6 1,979,649 + +1.7 1,979,649 + -1.1 1,979,649 + -0.2 1,979,650 - -1.0 1,979,650 - -0.3 1,979,650 - -0.7 1,979,650 - +0.1 1,979,650 - -0.6 1,979,650 - -2.1 1,979,650 - +0.4
Or see this region's nucleotide sequence