Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08795

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08785 and LRK53_RS08790 are separated by 34 nucleotidesLRK53_RS08790 and LRK53_RS08795 overlap by 4 nucleotidesLRK53_RS08795 and LRK53_RS08800 are separated by 95 nucleotidesLRK53_RS08800 and LRK53_RS08805 are separated by 83 nucleotidesLRK53_RS08805 and LRK53_RS08815 are separated by 261 nucleotides LRK53_RS08785: LRK53_RS08785 - glycosyltransferase family 9 protein, at 1,976,489 to 1,977,532 _RS08785 LRK53_RS08790: LRK53_RS08790 - 3-deoxy-D-manno-octulosonic acid kinase, at 1,977,567 to 1,978,298 _RS08790 LRK53_RS08795: LRK53_RS08795 - MBL fold metallo-hydrolase, at 1,978,295 to 1,979,053 _RS08795 LRK53_RS08800: LRK53_RS08800 - tRNA-Ser, at 1,979,149 to 1,979,260 _RS08800 LRK53_RS08805: LRK53_RS08805 - tRNA-Ser, at 1,979,344 to 1,979,436 _RS08805 LRK53_RS08815: LRK53_RS08815 - DNA polymerase III subunit gamma/tau, at 1,979,698 to 1,981,377 _RS08815 Position (kb) 1978 1979 1980Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1977.455 kb on - strandat 1977.543 kb on + strandat 1977.544 kb on - strandat 1977.762 kb on + strand, within LRK53_RS08790at 1977.804 kb on + strand, within LRK53_RS08790at 1977.805 kb on - strand, within LRK53_RS08790at 1977.931 kb on - strand, within LRK53_RS08790at 1978.269 kb on + strandat 1978.439 kb on + strand, within LRK53_RS08795at 1978.440 kb on - strand, within LRK53_RS08795at 1978.440 kb on - strand, within LRK53_RS08795at 1978.474 kb on + strand, within LRK53_RS08795at 1978.475 kb on - strand, within LRK53_RS08795at 1978.571 kb on - strand, within LRK53_RS08795at 1978.934 kb on + strand, within LRK53_RS08795at 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.099 kb on + strandat 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.190 kb on + strand, within LRK53_RS08800at 1979.192 kb on + strand, within LRK53_RS08800at 1979.192 kb on + strand, within LRK53_RS08800at 1979.192 kb on + strand, within LRK53_RS08800at 1979.192 kb on + strand, within LRK53_RS08800at 1979.192 kb on + strand, within LRK53_RS08800at 1979.199 kb on + strand, within LRK53_RS08800at 1979.321 kb on + strandat 1979.321 kb on + strandat 1979.321 kb on + strandat 1979.493 kb on + strandat 1979.641 kb on + strandat 1979.641 kb on + strandat 1979.641 kb on + strandat 1979.641 kb on + strandat 1979.642 kb on - strandat 1979.642 kb on - strandat 1979.642 kb on - strandat 1979.642 kb on - strandat 1979.642 kb on - strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.649 kb on + strandat 1979.650 kb on - strandat 1979.650 kb on - strandat 1979.650 kb on - strandat 1979.650 kb on - strandat 1979.650 kb on - strandat 1979.650 kb on - strandat 1979.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,977,455 - -0.4
1,977,543 + +0.7
1,977,544 - -2.4
1,977,762 + LRK53_RS08790 0.27 -0.4
1,977,804 + LRK53_RS08790 0.32 -1.8
1,977,805 - LRK53_RS08790 0.33 +1.7
1,977,931 - LRK53_RS08790 0.50 +0.4
1,978,269 + -0.1
1,978,439 + LRK53_RS08795 0.19 +1.1
1,978,440 - LRK53_RS08795 0.19 +0.4
1,978,440 - LRK53_RS08795 0.19 -0.2
1,978,474 + LRK53_RS08795 0.24 -0.7
1,978,475 - LRK53_RS08795 0.24 +0.7
1,978,571 - LRK53_RS08795 0.36 +1.6
1,978,934 + LRK53_RS08795 0.84 -1.3
1,979,099 + +0.6
1,979,099 + +0.6
1,979,099 + -1.6
1,979,099 + +0.7
1,979,099 + -1.6
1,979,099 + +0.9
1,979,099 + -3.4
1,979,099 + +0.6
1,979,099 + +0.3
1,979,099 + +0.4
1,979,099 + -0.4
1,979,190 + LRK53_RS08800 0.37 -0.7
1,979,190 + LRK53_RS08800 0.37 +0.9
1,979,190 + LRK53_RS08800 0.37 +2.1
1,979,190 + LRK53_RS08800 0.37 -1.3
1,979,190 + LRK53_RS08800 0.37 -2.6
1,979,190 + LRK53_RS08800 0.37 -1.2
1,979,190 + LRK53_RS08800 0.37 +1.3
1,979,190 + LRK53_RS08800 0.37 -0.8
1,979,190 + LRK53_RS08800 0.37 -2.6
1,979,190 + LRK53_RS08800 0.37 -1.6
1,979,190 + LRK53_RS08800 0.37 -0.4
1,979,190 + LRK53_RS08800 0.37 -0.6
1,979,190 + LRK53_RS08800 0.37 -0.3
1,979,190 + LRK53_RS08800 0.37 -2.2
1,979,190 + LRK53_RS08800 0.37 -1.0
1,979,190 + LRK53_RS08800 0.37 -0.2
1,979,190 + LRK53_RS08800 0.37 -1.4
1,979,190 + LRK53_RS08800 0.37 -1.0
1,979,190 + LRK53_RS08800 0.37 -0.1
1,979,190 + LRK53_RS08800 0.37 -1.9
1,979,190 + LRK53_RS08800 0.37 +0.2
1,979,190 + LRK53_RS08800 0.37 +0.6
1,979,190 + LRK53_RS08800 0.37 -1.9
1,979,190 + LRK53_RS08800 0.37 -0.1
1,979,190 + LRK53_RS08800 0.37 -1.0
1,979,190 + LRK53_RS08800 0.37 -0.4
1,979,190 + LRK53_RS08800 0.37 -0.9
1,979,190 + LRK53_RS08800 0.37 -0.6
1,979,192 + LRK53_RS08800 0.38 -0.1
1,979,192 + LRK53_RS08800 0.38 -1.1
1,979,192 + LRK53_RS08800 0.38 -1.5
1,979,192 + LRK53_RS08800 0.38 +0.5
1,979,192 + LRK53_RS08800 0.38 +1.0
1,979,199 + LRK53_RS08800 0.45 -0.9
1,979,321 + +0.1
1,979,321 + +0.3
1,979,321 + +0.4
1,979,493 + +0.2
1,979,641 + +0.7
1,979,641 + +2.0
1,979,641 + +0.4
1,979,641 + +1.0
1,979,642 - +1.8
1,979,642 - -1.5
1,979,642 - -0.0
1,979,642 - -0.5
1,979,642 - -1.6
1,979,649 + -0.8
1,979,649 + -0.8
1,979,649 + -1.0
1,979,649 + -0.9
1,979,649 + -0.9
1,979,649 + +1.6
1,979,649 + -1.4
1,979,649 + -1.5
1,979,649 + -0.2
1,979,649 + -0.3
1,979,649 + -0.6
1,979,649 + -1.9
1,979,649 + -0.0
1,979,649 + -1.9
1,979,649 + +0.7
1,979,649 + -2.0
1,979,649 + +0.4
1,979,649 + -0.8
1,979,649 + +0.4
1,979,649 + +0.0
1,979,649 + -0.6
1,979,649 + +1.7
1,979,649 + -1.1
1,979,649 + -0.2
1,979,650 - -1.0
1,979,650 - -0.3
1,979,650 - -0.7
1,979,650 - +0.1
1,979,650 - -0.6
1,979,650 - -2.1
1,979,650 - +0.4

Or see this region's nucleotide sequence