Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08770

Experiment: Biofilm; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08765 and LRK53_RS08770 are separated by 115 nucleotidesLRK53_RS08770 and LRK53_RS08775 are separated by 134 nucleotides LRK53_RS08765: LRK53_RS08765 - histidine--tRNA ligase, at 1,972,150 to 1,973,523 _RS08765 LRK53_RS08770: LRK53_RS08770 - GIY-YIG nuclease family protein, at 1,973,639 to 1,973,932 _RS08770 LRK53_RS08775: LRK53_RS08775 - aromatic amino acid ammonia-lyase, at 1,974,067 to 1,975,956 _RS08775 Position (kb) 1973 1974Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1973.534 kb on + strandat 1973.534 kb on + strandat 1973.534 kb on + strandat 1973.534 kb on + strandat 1973.535 kb on - strandat 1973.535 kb on - strandat 1973.535 kb on - strandat 1973.535 kb on - strandat 1973.663 kb on + strandat 1973.663 kb on + strandat 1973.663 kb on + strandat 1973.663 kb on + strandat 1973.663 kb on + strandat 1973.664 kb on - strandat 1973.664 kb on - strandat 1973.664 kb on - strandat 1973.664 kb on - strandat 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.696 kb on + strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.697 kb on - strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.764 kb on + strand, within LRK53_RS08770at 1973.765 kb on - strand, within LRK53_RS08770at 1973.774 kb on + strand, within LRK53_RS08770at 1973.931 kb on - strandat 1973.931 kb on - strandat 1974.064 kb on + strandat 1974.064 kb on + strandat 1974.229 kb on + strandat 1974.229 kb on + strandat 1974.229 kb on + strandat 1974.229 kb on + strandat 1974.229 kb on + strandat 1974.229 kb on + strandat 1974.230 kb on - strandat 1974.230 kb on - strandat 1974.371 kb on + strand, within LRK53_RS08775at 1974.371 kb on + strand, within LRK53_RS08775at 1974.371 kb on + strand, within LRK53_RS08775at 1974.371 kb on + strand, within LRK53_RS08775at 1974.372 kb on - strand, within LRK53_RS08775at 1974.469 kb on - strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.607 kb on + strand, within LRK53_RS08775at 1974.608 kb on - strand, within LRK53_RS08775at 1974.608 kb on - strand, within LRK53_RS08775at 1974.608 kb on - strand, within LRK53_RS08775at 1974.608 kb on - strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.884 kb on + strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.885 kb on - strand, within LRK53_RS08775at 1974.925 kb on + strand, within LRK53_RS08775at 1974.926 kb on - strand, within LRK53_RS08775at 1974.926 kb on - strand, within LRK53_RS08775

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Per-strain Table

Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7
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1,973,534 + -1.6
1,973,534 + -0.5
1,973,534 + -1.4
1,973,534 + -0.8
1,973,535 - -3.2
1,973,535 - -1.1
1,973,535 - -1.3
1,973,535 - -0.6
1,973,663 + +1.2
1,973,663 + +1.0
1,973,663 + -0.4
1,973,663 + -3.0
1,973,663 + +0.3
1,973,664 - +2.1
1,973,664 - +0.6
1,973,664 - -0.1
1,973,664 - -0.8
1,973,696 + LRK53_RS08770 0.19 -0.3
1,973,696 + LRK53_RS08770 0.19 -0.9
1,973,696 + LRK53_RS08770 0.19 +0.7
1,973,696 + LRK53_RS08770 0.19 -1.6
1,973,696 + LRK53_RS08770 0.19 +1.4
1,973,696 + LRK53_RS08770 0.19 -0.9
1,973,696 + LRK53_RS08770 0.19 +1.7
1,973,696 + LRK53_RS08770 0.19 -0.0
1,973,696 + LRK53_RS08770 0.19 -2.7
1,973,696 + LRK53_RS08770 0.19 +0.6
1,973,696 + LRK53_RS08770 0.19 +0.4
1,973,696 + LRK53_RS08770 0.19 -2.1
1,973,696 + LRK53_RS08770 0.19 +0.5
1,973,697 - LRK53_RS08770 0.20 -1.3
1,973,697 - LRK53_RS08770 0.20 +0.3
1,973,697 - LRK53_RS08770 0.20 -0.4
1,973,697 - LRK53_RS08770 0.20 +1.5
1,973,697 - LRK53_RS08770 0.20 +1.1
1,973,697 - LRK53_RS08770 0.20 -0.8
1,973,697 - LRK53_RS08770 0.20 +1.3
1,973,697 - LRK53_RS08770 0.20 +1.9
1,973,697 - LRK53_RS08770 0.20 +0.6
1,973,697 - LRK53_RS08770 0.20 -1.6
1,973,697 - LRK53_RS08770 0.20 -1.9
1,973,764 + LRK53_RS08770 0.43 +0.9
1,973,764 + LRK53_RS08770 0.43 -1.8
1,973,764 + LRK53_RS08770 0.43 +2.1
1,973,764 + LRK53_RS08770 0.43 -0.6
1,973,764 + LRK53_RS08770 0.43 +1.4
1,973,764 + LRK53_RS08770 0.43 +1.2
1,973,765 - LRK53_RS08770 0.43 -1.9
1,973,774 + LRK53_RS08770 0.46 +0.2
1,973,931 - -2.9
1,973,931 - -2.5
1,974,064 + -0.6
1,974,064 + -0.2
1,974,229 + -0.1
1,974,229 + +4.0
1,974,229 + -1.6
1,974,229 + -1.3
1,974,229 + -0.1
1,974,229 + -2.5
1,974,230 - +1.2
1,974,230 - -1.6
1,974,371 + LRK53_RS08775 0.16 -1.6
1,974,371 + LRK53_RS08775 0.16 +0.6
1,974,371 + LRK53_RS08775 0.16 -0.9
1,974,371 + LRK53_RS08775 0.16 +1.1
1,974,372 - LRK53_RS08775 0.16 -0.6
1,974,469 - LRK53_RS08775 0.21 -0.9
1,974,607 + LRK53_RS08775 0.29 -2.6
1,974,607 + LRK53_RS08775 0.29 -0.1
1,974,607 + LRK53_RS08775 0.29 +0.1
1,974,607 + LRK53_RS08775 0.29 -0.1
1,974,607 + LRK53_RS08775 0.29 -1.1
1,974,607 + LRK53_RS08775 0.29 -1.5
1,974,607 + LRK53_RS08775 0.29 -0.9
1,974,607 + LRK53_RS08775 0.29 -3.4
1,974,608 - LRK53_RS08775 0.29 +0.6
1,974,608 - LRK53_RS08775 0.29 +0.1
1,974,608 - LRK53_RS08775 0.29 +0.4
1,974,608 - LRK53_RS08775 0.29 -0.5
1,974,884 + LRK53_RS08775 0.43 -0.7
1,974,884 + LRK53_RS08775 0.43 -1.1
1,974,884 + LRK53_RS08775 0.43 +1.2
1,974,884 + LRK53_RS08775 0.43 -0.5
1,974,884 + LRK53_RS08775 0.43 -2.1
1,974,884 + LRK53_RS08775 0.43 -1.2
1,974,884 + LRK53_RS08775 0.43 -0.7
1,974,884 + LRK53_RS08775 0.43 +0.2
1,974,884 + LRK53_RS08775 0.43 -0.6
1,974,884 + LRK53_RS08775 0.43 -0.4
1,974,885 - LRK53_RS08775 0.43 -0.7
1,974,885 - LRK53_RS08775 0.43 -1.0
1,974,885 - LRK53_RS08775 0.43 +1.4
1,974,885 - LRK53_RS08775 0.43 +0.4
1,974,885 - LRK53_RS08775 0.43 -1.1
1,974,885 - LRK53_RS08775 0.43 +0.2
1,974,885 - LRK53_RS08775 0.43 +0.3
1,974,925 + LRK53_RS08775 0.45 +1.9
1,974,926 - LRK53_RS08775 0.45 -1.0
1,974,926 - LRK53_RS08775 0.45 -0.0

Or see this region's nucleotide sequence