Experiment: Biofilm; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS08765 and LRK53_RS08770 are separated by 115 nucleotides LRK53_RS08770 and LRK53_RS08775 are separated by 134 nucleotides
LRK53_RS08765: LRK53_RS08765 - histidine--tRNA ligase, at 1,972,150 to 1,973,523
_RS08765
LRK53_RS08770: LRK53_RS08770 - GIY-YIG nuclease family protein, at 1,973,639 to 1,973,932
_RS08770
LRK53_RS08775: LRK53_RS08775 - aromatic amino acid ammonia-lyase, at 1,974,067 to 1,975,956
_RS08775
Position (kb)
1973
1974 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1973.534 kb on + strand at 1973.534 kb on + strand at 1973.534 kb on + strand at 1973.534 kb on + strand at 1973.535 kb on - strand at 1973.535 kb on - strand at 1973.535 kb on - strand at 1973.535 kb on - strand at 1973.663 kb on + strand at 1973.663 kb on + strand at 1973.663 kb on + strand at 1973.663 kb on + strand at 1973.663 kb on + strand at 1973.664 kb on - strand at 1973.664 kb on - strand at 1973.664 kb on - strand at 1973.664 kb on - strand at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.696 kb on + strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.697 kb on - strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.764 kb on + strand, within LRK53_RS08770 at 1973.765 kb on - strand, within LRK53_RS08770 at 1973.774 kb on + strand, within LRK53_RS08770 at 1973.931 kb on - strand at 1973.931 kb on - strand at 1974.064 kb on + strand at 1974.064 kb on + strand at 1974.229 kb on + strand at 1974.229 kb on + strand at 1974.229 kb on + strand at 1974.229 kb on + strand at 1974.229 kb on + strand at 1974.229 kb on + strand at 1974.230 kb on - strand at 1974.230 kb on - strand at 1974.371 kb on + strand, within LRK53_RS08775 at 1974.371 kb on + strand, within LRK53_RS08775 at 1974.371 kb on + strand, within LRK53_RS08775 at 1974.371 kb on + strand, within LRK53_RS08775 at 1974.372 kb on - strand, within LRK53_RS08775 at 1974.469 kb on - strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.607 kb on + strand, within LRK53_RS08775 at 1974.608 kb on - strand, within LRK53_RS08775 at 1974.608 kb on - strand, within LRK53_RS08775 at 1974.608 kb on - strand, within LRK53_RS08775 at 1974.608 kb on - strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.884 kb on + strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.885 kb on - strand, within LRK53_RS08775 at 1974.925 kb on + strand, within LRK53_RS08775 at 1974.926 kb on - strand, within LRK53_RS08775 at 1974.926 kb on - strand, within LRK53_RS08775
Per-strain Table
Position Strand Gene LocusTag Fraction Biofilm; Day2; SGW; pH7 remove 1,973,534 + -1.6 1,973,534 + -0.5 1,973,534 + -1.4 1,973,534 + -0.8 1,973,535 - -3.2 1,973,535 - -1.1 1,973,535 - -1.3 1,973,535 - -0.6 1,973,663 + +1.2 1,973,663 + +1.0 1,973,663 + -0.4 1,973,663 + -3.0 1,973,663 + +0.3 1,973,664 - +2.1 1,973,664 - +0.6 1,973,664 - -0.1 1,973,664 - -0.8 1,973,696 + LRK53_RS08770 0.19 -0.3 1,973,696 + LRK53_RS08770 0.19 -0.9 1,973,696 + LRK53_RS08770 0.19 +0.7 1,973,696 + LRK53_RS08770 0.19 -1.6 1,973,696 + LRK53_RS08770 0.19 +1.4 1,973,696 + LRK53_RS08770 0.19 -0.9 1,973,696 + LRK53_RS08770 0.19 +1.7 1,973,696 + LRK53_RS08770 0.19 -0.0 1,973,696 + LRK53_RS08770 0.19 -2.7 1,973,696 + LRK53_RS08770 0.19 +0.6 1,973,696 + LRK53_RS08770 0.19 +0.4 1,973,696 + LRK53_RS08770 0.19 -2.1 1,973,696 + LRK53_RS08770 0.19 +0.5 1,973,697 - LRK53_RS08770 0.20 -1.3 1,973,697 - LRK53_RS08770 0.20 +0.3 1,973,697 - LRK53_RS08770 0.20 -0.4 1,973,697 - LRK53_RS08770 0.20 +1.5 1,973,697 - LRK53_RS08770 0.20 +1.1 1,973,697 - LRK53_RS08770 0.20 -0.8 1,973,697 - LRK53_RS08770 0.20 +1.3 1,973,697 - LRK53_RS08770 0.20 +1.9 1,973,697 - LRK53_RS08770 0.20 +0.6 1,973,697 - LRK53_RS08770 0.20 -1.6 1,973,697 - LRK53_RS08770 0.20 -1.9 1,973,764 + LRK53_RS08770 0.43 +0.9 1,973,764 + LRK53_RS08770 0.43 -1.8 1,973,764 + LRK53_RS08770 0.43 +2.1 1,973,764 + LRK53_RS08770 0.43 -0.6 1,973,764 + LRK53_RS08770 0.43 +1.4 1,973,764 + LRK53_RS08770 0.43 +1.2 1,973,765 - LRK53_RS08770 0.43 -1.9 1,973,774 + LRK53_RS08770 0.46 +0.2 1,973,931 - -2.9 1,973,931 - -2.5 1,974,064 + -0.6 1,974,064 + -0.2 1,974,229 + -0.1 1,974,229 + +4.0 1,974,229 + -1.6 1,974,229 + -1.3 1,974,229 + -0.1 1,974,229 + -2.5 1,974,230 - +1.2 1,974,230 - -1.6 1,974,371 + LRK53_RS08775 0.16 -1.6 1,974,371 + LRK53_RS08775 0.16 +0.6 1,974,371 + LRK53_RS08775 0.16 -0.9 1,974,371 + LRK53_RS08775 0.16 +1.1 1,974,372 - LRK53_RS08775 0.16 -0.6 1,974,469 - LRK53_RS08775 0.21 -0.9 1,974,607 + LRK53_RS08775 0.29 -2.6 1,974,607 + LRK53_RS08775 0.29 -0.1 1,974,607 + LRK53_RS08775 0.29 +0.1 1,974,607 + LRK53_RS08775 0.29 -0.1 1,974,607 + LRK53_RS08775 0.29 -1.1 1,974,607 + LRK53_RS08775 0.29 -1.5 1,974,607 + LRK53_RS08775 0.29 -0.9 1,974,607 + LRK53_RS08775 0.29 -3.4 1,974,608 - LRK53_RS08775 0.29 +0.6 1,974,608 - LRK53_RS08775 0.29 +0.1 1,974,608 - LRK53_RS08775 0.29 +0.4 1,974,608 - LRK53_RS08775 0.29 -0.5 1,974,884 + LRK53_RS08775 0.43 -0.7 1,974,884 + LRK53_RS08775 0.43 -1.1 1,974,884 + LRK53_RS08775 0.43 +1.2 1,974,884 + LRK53_RS08775 0.43 -0.5 1,974,884 + LRK53_RS08775 0.43 -2.1 1,974,884 + LRK53_RS08775 0.43 -1.2 1,974,884 + LRK53_RS08775 0.43 -0.7 1,974,884 + LRK53_RS08775 0.43 +0.2 1,974,884 + LRK53_RS08775 0.43 -0.6 1,974,884 + LRK53_RS08775 0.43 -0.4 1,974,885 - LRK53_RS08775 0.43 -0.7 1,974,885 - LRK53_RS08775 0.43 -1.0 1,974,885 - LRK53_RS08775 0.43 +1.4 1,974,885 - LRK53_RS08775 0.43 +0.4 1,974,885 - LRK53_RS08775 0.43 -1.1 1,974,885 - LRK53_RS08775 0.43 +0.2 1,974,885 - LRK53_RS08775 0.43 +0.3 1,974,925 + LRK53_RS08775 0.45 +1.9 1,974,926 - LRK53_RS08775 0.45 -1.0 1,974,926 - LRK53_RS08775 0.45 -0.0
Or see this region's nucleotide sequence